Rmu_sc0022824.1_g000003

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022824.1
OG0000579
Physical Location & Seq
Reverse (-)
3933 .. 4518
586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022824.1_g000003.1.cds

Sequence Viewer

Length: 417 bp
atgcccacacgtcgtggcaaatccatgagttttgttcctggcatcgttccctttccggaaagctataggaatcgcgaatcggacaccgaatgccaaagttgctatagtaacttgagtttttctccttttgcacgatcgagctgttcttcaattcggactgccattcgttctacatcattattgcagcctacgaaatttaaaggtccttgcaaatcaaatggggttaatgttcaggtgttggggatgctggtggcacccaaaacgccggatgcttggaaagagtgtgaatcaaatagctggctctcgtttaggaatgtgcacaatctcactgccaacggttcgggactaattgacggccagggttcatcttggtggagcaaggataacgaccaaagggcaaaggctctacatagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

138

Amino Acids

15.31

Weight (kDa)

9.62

Isoelectric Point (pI)

60.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000579)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32370 AT4G32375 AT4G32380 AT4G32380
fragaria_vesca FvH4_2g29242 FvH4_2g29270 FvH4_4g07180 FvH4_4g07190 FvH4_6g32320 FvH4_6g35100
malus_domestica MD03G1260700.v1.1 MD03G1260800.v1.1 MD09G1203400.v1.1 MD15G1065500.v1.1 MD15G1124200.v1.1 MD15G1124300.v1.1
prunus_persica Prupe.1G247300_v2.0.a1 Prupe.1G247300_v2.0.a1 Prupe.1G479600_v2.0.a1 Prupe.1G479700_v2.0.a1 Prupe.3G043600_v2.0.a1 Prupe.4G130600_v2.0.a1 Prupe.7G064200_v2.0.a1
pyrus_communis pycom03g20830 pycom15g06200
rosa_chinensis RchiOBHm_Chr2g0140421 RchiOBHm_Chr2g0146281 RchiOBHm_Chr3g0458021 RchiOBHm_Chr3g0481551 RchiOBHm_Chr4g0399361 RchiOBHm_Chr4g0399381 RchiOBHm_Chr4g0399391 RchiOBHm_Chr4g0399401 RchiOBHm_Chr4g0399411 RchiOBHm_Chr4g0399471
rosa_laevigata RLG00000009265 RLG00000009272 RLG00000011536 RLG00000011537 RLG00000019863 RLG00000020193 RLG00000023386
rosa_multiflora Rmu_sc0000384.1_g000011 Rmu_sc0002800.1_g000011 Rmu_sc0002800.1_g000012 Rmu_sc0017309.1_g000001 Rmu_sc0022824.1_g000003
rosa_roxburghii Rroxscaffold_153G00436780 Rroxscaffold_2G00100180 Rroxscaffold_5G00344320 Rroxscaffold_5G00344370 Rroxscaffold_6G00400330 Rroxscaffold_6G00421350 Rroxscaffold_7G00169940 Rroxscaffold_7G00169950
rosa_rugosa Rorug02G0362600 Rorug02G0394100 Rorug03G0024300 Rorug03G0192500 Rorug04G0016900 Rorug04G0017100 Rorug06G0278700
rosa_samantha Rh2CG399600 Rh2CG437200 Rh3AG084800 Rh3BG087600 Rh3CG088100 Rh3DG088500 Rh3DG270800 Rh4BG091900 Rh4BG092300 Rh5AG287300 Rh6DG389600
rosa_wichuraiana Rw0G012400 Rw2G033880 Rw2G036760 Rw3G007220 Rw3G021790 Rw4G007750 Rw4G007770 Rw4G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 253
AccII CGCG 1 cut(s) 75
AccIII TCCGGA 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 355
AcsI RAATTY 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 1 cut(s) 150
AjiI CACGTC 1 cut(s) 11
AjnI CCWGG 2 cut(s) 37, 357
AluBI AGCT 3 cut(s) 63, 141, 297
AluI AGCT 3 cut(s) 63, 141, 297
Alw21I GWGCWC 1 cut(s) 321
Alw44I GTGCAC 1 cut(s) 317
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 1 cut(s) 355
ApaLI GTGCAC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 203
AvaII GGWCC 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 321
BanI GGYRCC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 370
BciT130I CCWGG 2 cut(s) 39, 359
BfmI CTRYAG 2 cut(s) 64, 103
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 2 cut(s) 39, 359
Bme18I GGWCC 1 cut(s) 203
BmgBI CACGTC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 2 cut(s) 39, 359
BmsI GCATC 3 cut(s) 51, 234, 259
BplI GAGNNNNNCTC 2 cut(s) 106, 138
BpuEI CTTGAG 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 358
BsaWI WCCGGW 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 2 cut(s) 39, 359
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 2 cut(s) 249, 274
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 357
BshNI GGYRCC 1 cut(s) 253
BsiEI CGRYCG 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 2 cut(s) 56, 266
BslFI GGGAC 1 cut(s) 357
BsmFI GGGAC 1 cut(s) 357
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 321
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 1 cut(s) 134
Bsp68I TCGCGA 1 cut(s) 75
BspANI GGCC 1 cut(s) 357
BspEI TCCGGA 1 cut(s) 55
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 1 cut(s) 134
Bst2UI CCWGG 2 cut(s) 39, 359
Bst4CI ACNGT 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 299
BstF5I GGATG 2 cut(s) 249, 274
BstFNI CGCG 1 cut(s) 75
BstKTI GATC 1 cut(s) 137
BstMBI GATC 1 cut(s) 134
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstNI CCWGG 2 cut(s) 39, 359
BstSCI CCNGG 2 cut(s) 37, 357
BstSFI CTRYAG 2 cut(s) 64, 103
BstSLI GKGCMC 1 cut(s) 321
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 357
BtrI CACGTC 1 cut(s) 11
BtsCI GGATG 2 cut(s) 249, 274
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
BtuMI TCGCGA 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 203
CviAII CATG 1 cut(s) 25
CviJI RGCY 7 cut(s) 63, 141, 187, 297, 301, 357, 404
CviKI_1 RGCY 7 cut(s) 63, 141, 187, 297, 301, 357, 404
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
DraI TTTAAA 1 cut(s) 199
DraIII CACNNNGTG 1 cut(s) 14
EaeI YGGCCR 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 203
EcoRII CCWGG 2 cut(s) 37, 357
FaeI CATG 1 cut(s) 28
FaiI YATR 4 cut(s) 26, 66, 105, 411
FaqI GGGAC 1 cut(s) 357
FatI CATG 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 2 cut(s) 256, 281
Fsp4HI GCNGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 185
HaeIII GGCC 1 cut(s) 357
HapII CCGG 2 cut(s) 56, 266
Hin1II CATG 1 cut(s) 28
HinfI GANTC 3 cut(s) 70, 77, 287
HpaII CCGG 2 cut(s) 56, 266
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 2 cut(s) 82, 156
Hpy188III TCNNGA 3 cut(s) 56, 74, 342
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 15
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 4 cut(s) 131, 184, 210, 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 1 cut(s) 28
Kpn2I TCCGGA 1 cut(s) 55
Kzo9I GATC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 375
LpnPI CCDG 9 cut(s) 24, 51, 69, 218, 233, 279, 283, 344, 371
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 3 cut(s) 51, 234, 259
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 107
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MboII GAAGA 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 3 cut(s) 150, 194, 348
MroI TCCGGA 1 cut(s) 55
MseI TTAA 2 cut(s) 198, 225
MslI CAYNNNNRTG 1 cut(s) 370
MspI CCGG 2 cut(s) 56, 266
MspR9I CCNGG 2 cut(s) 39, 359
Mva1269I GAATGC 1 cut(s) 95
MvaI CCWGG 2 cut(s) 39, 359
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 99
NdeII GATC 1 cut(s) 134
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 255
NruI TCGCGA 1 cut(s) 75
PctI GAATGC 1 cut(s) 95
PfeI GAWTC 3 cut(s) 70, 77, 287
PkrI GCNGC 1 cut(s) 186
Ple19I CGATCG 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 203
Psp6I CCWGG 2 cut(s) 37, 357
PspGI CCWGG 2 cut(s) 37, 357
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 203
PspPPI RGGWCCY 1 cut(s) 203
PvuI CGATCG 1 cut(s) 137
RruI TCGCGA 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 370
SaqAI TTAA 2 cut(s) 198, 225
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 1 cut(s) 134
Sau96I GGNCC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 39, 359
SduI GDGCHC 1 cut(s) 321
SetI ASST 6 cut(s) 13, 65, 143, 205, 237, 299
SfaNI GCATC 3 cut(s) 51, 234, 259
SfcI CTRYAG 2 cut(s) 64, 103
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 3 cut(s) 150, 194, 348
StyD4I CCNGG 2 cut(s) 37, 357
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 137
TasI AATT 3 cut(s) 150, 194, 348
TfiI GAWTC 3 cut(s) 70, 77, 287
Tru1I TTAA 2 cut(s) 198, 225
Tru9I TTAA 2 cut(s) 198, 225
TscAI CASTG 1 cut(s) 334
TseI GCWGC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 354
TspRI CASTG 1 cut(s) 334
VneI GTGCAC 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.