Rmu_sc0017309.1_g000001

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017309.1
OG0000579
Physical Location & Seq
Forward (+)
3840 .. 5191
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017309.1_g000001.1.cds

Sequence Viewer

Length: 390 bp
atgtcaagacatgtcaatattcatgactgcataattggaacaggagacgattgcattgctattaaacgtggctcagtccttgtatatgtcaccaacattgcttgtggaccaggtcatggaattagaggaactctggcggatgaacatgcgattacatttgattgctccaagactgcatatggcactctagcttgtctcaacattaatatggagcaaatcaacattacttccatagatcccgaaaaggaaatctccgtcttatgcaagaatgtaaatggaactactgaagataccagtcccagtgttcattgcctacaagctagaaattcaaccattgatgcagatagtcctgatgcagatagtcctgatccctacgcctattctttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

129

Amino Acids

13.8

Weight (kDa)

4.67

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000579)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32370 AT4G32375 AT4G32380 AT4G32380
fragaria_vesca FvH4_2g29242 FvH4_2g29270 FvH4_4g07180 FvH4_4g07190 FvH4_6g32320 FvH4_6g35100
malus_domestica MD03G1260700.v1.1 MD03G1260800.v1.1 MD09G1203400.v1.1 MD15G1065500.v1.1 MD15G1124200.v1.1 MD15G1124300.v1.1
prunus_persica Prupe.1G247300_v2.0.a1 Prupe.1G247300_v2.0.a1 Prupe.1G479600_v2.0.a1 Prupe.1G479700_v2.0.a1 Prupe.3G043600_v2.0.a1 Prupe.4G130600_v2.0.a1 Prupe.7G064200_v2.0.a1
pyrus_communis pycom03g20830 pycom15g06200
rosa_chinensis RchiOBHm_Chr2g0140421 RchiOBHm_Chr2g0146281 RchiOBHm_Chr3g0458021 RchiOBHm_Chr3g0481551 RchiOBHm_Chr4g0399361 RchiOBHm_Chr4g0399381 RchiOBHm_Chr4g0399391 RchiOBHm_Chr4g0399401 RchiOBHm_Chr4g0399411 RchiOBHm_Chr4g0399471
rosa_laevigata RLG00000009265 RLG00000009272 RLG00000011536 RLG00000011537 RLG00000019863 RLG00000020193 RLG00000023386
rosa_multiflora Rmu_sc0000384.1_g000011 Rmu_sc0002800.1_g000011 Rmu_sc0002800.1_g000012 Rmu_sc0017309.1_g000001 Rmu_sc0022824.1_g000003
rosa_roxburghii Rroxscaffold_153G00436780 Rroxscaffold_2G00100180 Rroxscaffold_5G00344320 Rroxscaffold_5G00344370 Rroxscaffold_6G00400330 Rroxscaffold_6G00421350 Rroxscaffold_7G00169940 Rroxscaffold_7G00169950
rosa_rugosa Rorug02G0362600 Rorug02G0394100 Rorug03G0024300 Rorug03G0192500 Rorug04G0016900 Rorug04G0017100 Rorug06G0278700
rosa_samantha Rh2CG399600 Rh2CG437200 Rh3AG084800 Rh3BG087600 Rh3CG088100 Rh3DG088500 Rh3DG270800 Rh4BG091900 Rh4BG092300 Rh5AG287300 Rh6DG389600
rosa_wichuraiana Rw0G012400 Rw2G033880 Rw2G036760 Rw3G007220 Rw3G021790 Rw4G007750 Rw4G007770 Rw4G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 116
AciI CCGC 1 cut(s) 137
AclWI GGATC 2 cut(s) 230, 362
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 1 cut(s) 330
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 2 cut(s) 191, 320
AluI AGCT 2 cut(s) 191, 320
Alw26I GTCTC 2 cut(s) 39, 200
AlwI GGATC 2 cut(s) 230, 362
ApoI RAATTY 1 cut(s) 325
AseI ATTAAT 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 107
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciT130I CCWGG 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 39, 200
BfaI CTAG 2 cut(s) 188, 321
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 111
BmrI ACTGGG 1 cut(s) 294
BmsI GCATC 2 cut(s) 328, 343
BmuI ACTGGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 294, 300
Bse3DI GCAATG 3 cut(s) 54, 96, 307
BseBI CCWGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMI GCAATG 3 cut(s) 54, 96, 307
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 294, 300
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 2 cut(s) 39, 200
BsmBI CGTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 282
Bsp143I GATC 2 cut(s) 235, 367
BspACI CCGC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 86
BspHI TCATGA 1 cut(s) 22
BspPI GGATC 2 cut(s) 230, 362
BsrDI GCAATG 3 cut(s) 54, 96, 307
BsrI ACTGG 2 cut(s) 294, 300
BssMI GATC 2 cut(s) 235, 367
Bst2UI CCWGG 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 73
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 2 cut(s) 238, 370
BstMAI GTCTC 2 cut(s) 39, 200
BstMBI GATC 2 cut(s) 235, 367
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 2 cut(s) 14, 149
BstSCI CCNGG 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 307
CciI TCATGA 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 107
CsiI ACCWGGT 1 cut(s) 109
CviAII CATG 4 cut(s) 11, 23, 116, 146
CviJI RGCY 3 cut(s) 72, 191, 320
CviKI_1 RGCY 3 cut(s) 72, 191, 320
DdeI CTNAG 1 cut(s) 73
DpnI GATC 2 cut(s) 237, 369
DpnII GATC 2 cut(s) 235, 367
EciI GGCGGA 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 4 cut(s) 14, 26, 119, 149
FaqI GGGAC 1 cut(s) 282
FatI CATG 4 cut(s) 10, 22, 115, 145
FauNDI CATATG 1 cut(s) 178
FokI GGATG 1 cut(s) 152
FspBI CTAG 2 cut(s) 188, 321
Hin1II CATG 4 cut(s) 14, 26, 119, 149
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 107
Hpy188III TCNNGA 5 cut(s) 6, 23, 239, 350, 365
Hpy8I GTNNAC 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 6 cut(s) 30, 54, 176, 264, 341, 356
HpyF3I CTNAG 1 cut(s) 73
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 4 cut(s) 14, 26, 119, 149
Kzo9I GATC 2 cut(s) 235, 367
LmnI GCTCC 2 cut(s) 170, 211
LpnPI CCDG 8 cut(s) 27, 96, 119, 123, 307, 313, 363, 378
LweI GCATC 2 cut(s) 328, 343
MabI ACCWGGT 1 cut(s) 109
MaeI CTAG 2 cut(s) 188, 321
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 88
MalI GATC 2 cut(s) 237, 369
MboI GATC 2 cut(s) 235, 367
MboII GAAGA 1 cut(s) 299
MflI RGATCY 1 cut(s) 235
MluCI AATT 3 cut(s) 33, 120, 325
MnlI CCTC 1 cut(s) 119
MseI TTAA 2 cut(s) 63, 204
MslI CAYNNNNRTG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 178
NdeII GATC 2 cut(s) 235, 367
NlaIII CATG 4 cut(s) 14, 26, 119, 149
NmuCI GTSAC 1 cut(s) 88
NspI RCATGY 2 cut(s) 14, 149
PagI TCATGA 1 cut(s) 22
PciI ACATGT 1 cut(s) 10
PflFI GACNNNGTC 1 cut(s) 111
PflMI CCANNNNNTGG 1 cut(s) 116
PscI ACATGT 1 cut(s) 10
PshBI ATTAAT 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspPI GGNCC 1 cut(s) 107
PsuI RGATCY 1 cut(s) 235
PsyI GACNNNGTC 1 cut(s) 111
RseI CAYNNNNRTG 1 cut(s) 206
SaqAI TTAA 2 cut(s) 63, 204
Sau3AI GATC 2 cut(s) 235, 367
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 111
SetI ASST 4 cut(s) 70, 115, 193, 322
SexAI ACCWGGT 1 cut(s) 109
SfaNI GCATC 2 cut(s) 328, 343
SinI GGWCC 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 3 cut(s) 33, 120, 325
SsiI CCGC 1 cut(s) 137
SspI AATATT 1 cut(s) 19
SspMI CTAG 2 cut(s) 188, 321
StyD4I CCNGG 1 cut(s) 109
TaiI ACGT 1 cut(s) 70
TasI AATT 3 cut(s) 33, 120, 325
Tru1I TTAA 2 cut(s) 63, 204
Tru9I TTAA 2 cut(s) 63, 204
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 3 cut(s) 11, 156, 296
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 1 cut(s) 307
Tth111I GACNNNGTC 1 cut(s) 111
Van91I CCANNNNNTGG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 107
VspI ATTAAT 1 cut(s) 204
XapI RAATTY 1 cut(s) 325
XceI RCATGY 2 cut(s) 14, 149
XspI CTAG 2 cut(s) 188, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.