Rh3AG084800

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000579
Physical Location & Seq
Forward (+)
6839714 .. 6841117
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG084800.1

Sequence Viewer

Length: 450 bp
ATGCAGTACATACTAGTGAGCTTTTTGATATTTTGCATATCTTCATCTCATTTAAGCGACATTGTATATGGAAAAAAAACATATGATGTTCTTAGTTATGGTGCTGTTGGAGATGGAAAAGCTGATGATTCAAAAGCTTTTGTAAGAGCGTGGGAAGATTTATGTGGAGCATCTGAAACTTATGATGCACCAACACTTCAGATACCGGCGGGGAAAACATTCTTATTGCAGCCTACGAAATTTAAAGGTCCATGCAAATCAAAAAGTGTTCATGTTCAGGTGTTGGGGAAGGTGGTGGCACCCAAAACACCGGATGCTTGGAAACAGTGTGAATCAAATTACTGGCTTTCCTTTTCAAATGTGGCAAACCTCAGAATGAATGGCGGTTCAGGAATAATCGACGGCCAAGCGTGGGAAGCTTGGGAGAAAATGGGGCTTACGCAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

149

Amino Acids

16.38

Weight (kDa)

7.63

Isoelectric Point (pI)

25.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 64 - 145 3.1e-07 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000579)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32370 AT4G32375 AT4G32380 AT4G32380
fragaria_vesca FvH4_2g29242 FvH4_2g29270 FvH4_4g07180 FvH4_4g07190 FvH4_6g32320 FvH4_6g35100
malus_domestica MD03G1260700.v1.1 MD03G1260800.v1.1 MD09G1203400.v1.1 MD15G1065500.v1.1 MD15G1124200.v1.1 MD15G1124300.v1.1
prunus_persica Prupe.1G247300_v2.0.a1 Prupe.1G247300_v2.0.a1 Prupe.1G479600_v2.0.a1 Prupe.1G479700_v2.0.a1 Prupe.3G043600_v2.0.a1 Prupe.4G130600_v2.0.a1 Prupe.7G064200_v2.0.a1
pyrus_communis pycom03g20830 pycom15g06200
rosa_chinensis RchiOBHm_Chr2g0140421 RchiOBHm_Chr2g0146281 RchiOBHm_Chr3g0458021 RchiOBHm_Chr3g0481551 RchiOBHm_Chr4g0399361 RchiOBHm_Chr4g0399381 RchiOBHm_Chr4g0399391 RchiOBHm_Chr4g0399401 RchiOBHm_Chr4g0399411 RchiOBHm_Chr4g0399471
rosa_laevigata RLG00000009265 RLG00000009272 RLG00000011536 RLG00000011537 RLG00000019863 RLG00000020193 RLG00000023386
rosa_multiflora Rmu_sc0000384.1_g000011 Rmu_sc0002800.1_g000011 Rmu_sc0002800.1_g000012 Rmu_sc0017309.1_g000001 Rmu_sc0022824.1_g000003
rosa_roxburghii Rroxscaffold_153G00436780 Rroxscaffold_2G00100180 Rroxscaffold_5G00344320 Rroxscaffold_5G00344370 Rroxscaffold_6G00400330 Rroxscaffold_6G00421350 Rroxscaffold_7G00169940 Rroxscaffold_7G00169950
rosa_rugosa Rorug02G0362600 Rorug02G0394100 Rorug03G0024300 Rorug03G0192500 Rorug04G0016900 Rorug04G0017100 Rorug06G0278700
rosa_samantha Rh2CG399600 Rh2CG437200 Rh3AG084800 Rh3BG087600 Rh3CG088100 Rh3DG088500 Rh3DG270800 Rh4BG091900 Rh4BG092300 Rh5AG287300 Rh6DG389600
rosa_wichuraiana Rw0G012400 Rw2G033880 Rw2G036760 Rw3G007220 Rw3G021790 Rw4G007750 Rw4G007770 Rw4G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 298
AciI CCGC 2 cut(s) 209, 384
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 1 cut(s) 239
AcuI CTGAAG 1 cut(s) 182
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 2 cut(s) 132, 357
AhlI ACTAGT 1 cut(s) 13
AluBI AGCT 4 cut(s) 21, 122, 137, 419
AluI AGCT 4 cut(s) 21, 122, 137, 419
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 1 cut(s) 229
ApoI RAATTY 1 cut(s) 239
Asp700I GAANNNNTTC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 248
AvaII GGWCC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 107
BceAI ACGGC 1 cut(s) 418
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 1 cut(s) 14
BisI GCNGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 231
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 300
BmsI GCATC 3 cut(s) 175, 179, 304
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse118I RCCGGY 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 347
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 385
BseNI ACTGG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 1 cut(s) 405
BshNI GGYRCC 1 cut(s) 298
BsiSI CCGG 2 cut(s) 206, 311
BslI CCNNNNNNNGG 1 cut(s) 412
BsnI GGCC 1 cut(s) 405
BspACI CCGC 2 cut(s) 209, 384
BspANI GGCC 1 cut(s) 405
BspCNI CTCAG 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 300
BspT107I GGYRCC 1 cut(s) 298
BsrFI RCCGGY 1 cut(s) 205
BsrI ACTGG 1 cut(s) 347
BssAI RCCGGY 1 cut(s) 205
Bst4CI ACNGT 2 cut(s) 327, 447
BstDEI CTNAG 2 cut(s) 92, 371
BstF5I GGATG 1 cut(s) 319
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstV1I GCAGC 1 cut(s) 241
BsuRI GGCC 1 cut(s) 405
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 332
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 7
CviAII CATG 2 cut(s) 252, 272
CviJI RGCY 8 cut(s) 21, 122, 137, 232, 346, 405, 419, 436
CviKI_1 RGCY 8 cut(s) 21, 122, 137, 232, 346, 405, 419, 436
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 2 cut(s) 92, 371
DraI TTTAAA 1 cut(s) 244
EaeI YGGCCR 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 182
FaeI CATG 2 cut(s) 255, 275
FatI CATG 2 cut(s) 251, 271
FauI CCCGC 1 cut(s) 202
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 230
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 1 cut(s) 230
FspBI CTAG 1 cut(s) 14
GluI GCNGC 1 cut(s) 230
HaeIII GGCC 1 cut(s) 405
HapII CCGG 2 cut(s) 206, 311
Hin1II CATG 2 cut(s) 255, 275
HindIII AAGCTT 2 cut(s) 135, 417
HinfI GANTC 2 cut(s) 128, 332
HpaII CCGG 2 cut(s) 206, 311
Hpy188I TCNGA 3 cut(s) 175, 201, 374
Hpy188III TCNNGA 1 cut(s) 390
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 327, 447
HpyCH4V TGCA 5 cut(s) 4, 36, 188, 229, 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 2 cut(s) 92, 371
Hsp92II CATG 2 cut(s) 255, 275
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 5 cut(s) 219, 263, 324, 328, 375
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 3 cut(s) 175, 179, 304
MaeI CTAG 1 cut(s) 14
MboII GAAGA 2 cut(s) 33, 167
MluCI AATT 2 cut(s) 239, 337
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 1 cut(s) 380
MroXI GAANNNNTTC 1 cut(s) 218
MseI TTAA 2 cut(s) 53, 243
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 2 cut(s) 206, 311
MwoI GCNNNNNNNGC 1 cut(s) 416
NdeI CATATG 1 cut(s) 82
NlaIII CATG 2 cut(s) 255, 275
NlaIV GGNNCC 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 218
PfeI GAWTC 2 cut(s) 128, 332
PkrI GCNGC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 1 cut(s) 248
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 2 cut(s) 53, 243
SatI GCNGC 1 cut(s) 230
Sau96I GGNCC 1 cut(s) 248
SetI ASST 8 cut(s) 23, 124, 139, 250, 282, 294, 372, 421
SfaNI GCATC 3 cut(s) 175, 179, 304
SinI GGWCC 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 14
SpeI ACTAGT 1 cut(s) 13
Sse9I AATT 2 cut(s) 239, 337
SsiI CCGC 2 cut(s) 209, 384
SspMI CTAG 1 cut(s) 14
TaaI ACNGT 2 cut(s) 327, 447
TaqI TCGA 1 cut(s) 399
TasI AATT 2 cut(s) 239, 337
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 2 cut(s) 128, 332
Tru1I TTAA 2 cut(s) 53, 243
Tru9I TTAA 2 cut(s) 53, 243
TscAI CASTG 1 cut(s) 332
TseI GCWGC 1 cut(s) 229
TspDTI ATGAA 3 cut(s) 33, 260, 392
TspRI CASTG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 218
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.