Rh2CG437200

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000579
Physical Location & Seq
Reverse (-)
59336482 .. 59351714
15233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG437200.1

Sequence Viewer

Length: 1122 bp
ATGGTGGGATGTCTTTATGGAAAATTGCTTATAATTTTAGCAAGTACATGTAGAATAAATGTCAATGAAGTTCATTCAAAGTTGTTTATACTTCTCAGCAACTACTATACATATCACTGTCCCCGCCCAAGCCACATTCGCTTTAAGAAGGACTGGACATCTGGACTGCCTATGCATGAATTTAGAATTGGTTATGGCCAAACGACTTATAATGTACTCGACCATGGTGCAGTTGGAGATGGCCAAAGAGATGATTCTGAAATTTCGGGAAAAATTGTGGCACCCAGTTCAGATGCCTGGAAAGAGTGTGCAAACCCTTGGCTAGCCTTCTTCCAATTGACCAACCTCATCGTCAGTGGATCAGGAGAAATCAATGGCCAAGGTTCCTCTTGGTGGACTAAATATGAACAACTTAACTATGCTTTAGGTTTCCGCCGATGCGATAATCTTCAATTAAGTGGACTTACTCATGTTGACAGTCCAAAAACACATATTGCCATAAAATCTTGCAACAATGCAACTGTCTCTTATCTTACTATTAGGGCACCTGAAGATAGTCCGAACACAGATGGAATGGACATATCTATGTCAAGCCATGTCAATATTCATGATTGCAATATTGGAACCGGTGATGATTGTATCGCCATTAACAATGCGTCATTCTATATCAATATCAACAACATCCAATGCGGACCAGGTCATGGAATTAGCATTGGAAGCTTAGGCCAAAATGGAGCTTATGAAACAGTAGAAGAGATACATGTACAAAATTGCAGTTTCACTAGTACAATGTATGGAGCCAGAATCAAGACATATCAGGGTGGTTCCGGATATGCTAGAAAGATATCGTTTGAACAAATCGCCCTTAGAACTACTAGGAACCCCATTATTATTGACCAATTCTACTGTAATGGTCAGCATGACTGCCAAACTTCGACTTCGGCCGTACGGGTGAGTGAAGTGACATACAATGGGTTTCATGGAACTTCTGAGAACGAGCAAGCAATTACATTTAATTGCAGCCAAAGTATAAGTTGTGCCAACATTGTGATGAATCAAGTGAGTATCACTTCACCAGTTCCCAGTGAGCAGAAAATGAGGTTTTTGTTCGAGTCACGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

373

Amino Acids

41.27

Weight (kDa)

6.21

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 96 - 364 7e-76 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000579)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32370 AT4G32375 AT4G32380 AT4G32380
fragaria_vesca FvH4_2g29242 FvH4_2g29270 FvH4_4g07180 FvH4_4g07190 FvH4_6g32320 FvH4_6g35100
malus_domestica MD03G1260700.v1.1 MD03G1260800.v1.1 MD09G1203400.v1.1 MD15G1065500.v1.1 MD15G1124200.v1.1 MD15G1124300.v1.1
prunus_persica Prupe.1G247300_v2.0.a1 Prupe.1G247300_v2.0.a1 Prupe.1G479600_v2.0.a1 Prupe.1G479700_v2.0.a1 Prupe.3G043600_v2.0.a1 Prupe.4G130600_v2.0.a1 Prupe.7G064200_v2.0.a1
pyrus_communis pycom03g20830 pycom15g06200
rosa_chinensis RchiOBHm_Chr2g0140421 RchiOBHm_Chr2g0146281 RchiOBHm_Chr3g0458021 RchiOBHm_Chr3g0481551 RchiOBHm_Chr4g0399361 RchiOBHm_Chr4g0399381 RchiOBHm_Chr4g0399391 RchiOBHm_Chr4g0399401 RchiOBHm_Chr4g0399411 RchiOBHm_Chr4g0399471
rosa_laevigata RLG00000009265 RLG00000009272 RLG00000011536 RLG00000011537 RLG00000019863 RLG00000020193 RLG00000023386
rosa_multiflora Rmu_sc0000384.1_g000011 Rmu_sc0002800.1_g000011 Rmu_sc0002800.1_g000012 Rmu_sc0017309.1_g000001 Rmu_sc0022824.1_g000003
rosa_roxburghii Rroxscaffold_153G00436780 Rroxscaffold_2G00100180 Rroxscaffold_5G00344320 Rroxscaffold_5G00344370 Rroxscaffold_6G00400330 Rroxscaffold_6G00421350 Rroxscaffold_7G00169940 Rroxscaffold_7G00169950
rosa_rugosa Rorug02G0362600 Rorug02G0394100 Rorug03G0024300 Rorug03G0192500 Rorug04G0016900 Rorug04G0017100 Rorug06G0278700
rosa_samantha Rh2CG399600 Rh2CG437200 Rh3AG084800 Rh3BG087600 Rh3CG088100 Rh3DG088500 Rh3DG270800 Rh4BG091900 Rh4BG092300 Rh5AG287300 Rh6DG389600
rosa_wichuraiana Rw0G012400 Rw2G033880 Rw2G036760 Rw3G007220 Rw3G021790 Rw4G007750 Rw4G007770 Rw4G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 32, 210
AccB1I GGYRCC 2 cut(s) 280, 544
AccB7I CCANNNNNTGG 1 cut(s) 701
AccIII TCCGGA 1 cut(s) 827
AciI CCGC 3 cut(s) 124, 433, 690
AclWI GGATC 1 cut(s) 367
AcoI YGGCCR 4 cut(s) 196, 241, 376, 942
AcsI RAATTY 2 cut(s) 179, 261
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 5 cut(s) 46, 216, 765, 787, 948
AfiI CCNNNNNNNGG 2 cut(s) 393, 701
AflIII ACRYGT 2 cut(s) 47, 760
AgeI ACCGGT 1 cut(s) 626
AgsI TTSAA 3 cut(s) 78, 452, 854
AhlI ACTAGT 1 cut(s) 782
AjnI CCWGG 2 cut(s) 296, 694
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AluBI AGCT 2 cut(s) 720, 737
AluI AGCT 2 cut(s) 720, 737
Alw26I GTCTC 1 cut(s) 529
AlwI GGATC 1 cut(s) 367
Aor13HI TCCGGA 1 cut(s) 827
AoxI GGCC 5 cut(s) 196, 241, 376, 724, 942
ApeKI GCWGC 1 cut(s) 1020
ApoI RAATTY 2 cut(s) 179, 261
AsiGI ACCGGT 1 cut(s) 626
AspS9I GGNCC 1 cut(s) 692
AsuHPI GGTGA 3 cut(s) 641, 964, 1065
AsuNHI GCTAGC 1 cut(s) 322
AvaII GGWCC 1 cut(s) 692
BaeGI GKGCMC 1 cut(s) 547
BalI TGGCCA 3 cut(s) 198, 243, 378
BanI GGYRCC 2 cut(s) 280, 544
BbvI GCAGC 1 cut(s) 1032
BccI CCATC 2 cut(s) 233, 563
BceAI ACGGC 1 cut(s) 929
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 2 cut(s) 298, 696
BcoDI GTCTC 1 cut(s) 529
BcuI ACTAGT 1 cut(s) 782
BfaI CTAG 5 cut(s) 323, 783, 837, 876, 1120
BisI GCNGC 1 cut(s) 1021
BlsI GCNGC 1 cut(s) 1022
Bme1390I CCNGG 2 cut(s) 298, 696
Bme18I GGWCC 1 cut(s) 692
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 7 cut(s) 282, 385, 546, 625, 799, 826, 881
BmrFI CCNGG 2 cut(s) 298, 696
BmrI ACTGGG 2 cut(s) 279, 1077
BmsI GCATC 2 cut(s) 283, 428
BmtI GCTAGC 1 cut(s) 326
BmuI ACTGGG 2 cut(s) 279, 1077
Bpu10I CCTNAGC 1 cut(s) 721
BsaJI CCNNGG 3 cut(s) 223, 317, 379
BsaWI WCCGGW 2 cut(s) 626, 827
Bsc4I CCNNNNNNNGG 2 cut(s) 393, 701
Bse118I RCCGGY 1 cut(s) 626
Bse1I ACTGG 4 cut(s) 158, 285, 1076, 1083
BseAI TCCGGA 1 cut(s) 827
BseBI CCWGG 2 cut(s) 298, 696
BseDI CCNNGG 3 cut(s) 223, 317, 379
BseGI GGATG 2 cut(s) 14, 681
BseLI CCNNNNNNNGG 2 cut(s) 393, 701
BseMII CTCAG 2 cut(s) 109, 981
BseNI ACTGG 4 cut(s) 158, 285, 1076, 1083
BseSI GKGCMC 1 cut(s) 547
BseX3I CGGCCG 1 cut(s) 942
BseXI GCAGC 1 cut(s) 1032
BsgI GTGCAG 1 cut(s) 249
Bsh1285I CGRYCG 1 cut(s) 945
BshFI GGCC 5 cut(s) 198, 243, 378, 726, 944
BshNI GGYRCC 2 cut(s) 280, 544
BshTI ACCGGT 1 cut(s) 626
BsiEI CGRYCG 1 cut(s) 945
BsiSI CCGG 2 cut(s) 627, 828
BsiWI CGTACG 1 cut(s) 946
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 2 cut(s) 393, 701
BsmAI GTCTC 1 cut(s) 529
BsmFI GGGAC 1 cut(s) 105
BsnI GGCC 5 cut(s) 198, 243, 378, 726, 944
Bsp1286I GDGCHC 1 cut(s) 547
Bsp13I TCCGGA 1 cut(s) 827
Bsp1407I TGTACA 1 cut(s) 763
Bsp143I GATC 1 cut(s) 359
Bsp19I CCATGG 1 cut(s) 223
BspACI CCGC 3 cut(s) 124, 433, 690
BspANI GGCC 5 cut(s) 198, 243, 378, 726, 944
BspCNI CTCAG 2 cut(s) 108, 982
BspEI TCCGGA 1 cut(s) 827
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 7 cut(s) 282, 385, 546, 625, 799, 826, 881
BspOI GCTAGC 1 cut(s) 326
BspPI GGATC 1 cut(s) 367
BspT107I GGYRCC 2 cut(s) 280, 544
BsrFI RCCGGY 1 cut(s) 626
BsrGI TGTACA 1 cut(s) 763
BsrI ACTGG 4 cut(s) 158, 285, 1076, 1083
BssAI RCCGGY 1 cut(s) 626
BssECI CCNNGG 3 cut(s) 223, 317, 379
BssMI GATC 1 cut(s) 359
BssT1I CCWWGG 3 cut(s) 223, 317, 379
Bst2UI CCWGG 2 cut(s) 298, 696
Bst4CI ACNGT 5 cut(s) 119, 479, 523, 748, 908
Bst6I CTCTTC 1 cut(s) 747
BstAUI TGTACA 1 cut(s) 763
BstC8I GCNNGC 2 cut(s) 324, 1002
BstDEI CTNAG 4 cut(s) 95, 721, 866, 990
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 2 cut(s) 14, 681
BstKTI GATC 1 cut(s) 362
BstMAI GTCTC 1 cut(s) 529
BstMBI GATC 1 cut(s) 359
BstMCI CGRYCG 1 cut(s) 945
BstMWI GCNNNNNNNGC 2 cut(s) 138, 717
BstNI CCWGG 2 cut(s) 298, 696
BstNSI RCATGY 2 cut(s) 51, 764
BstSCI CCNGG 2 cut(s) 296, 694
BstSLI GKGCMC 1 cut(s) 547
BstV1I GCAGC 1 cut(s) 1032
BstZI CGGCCG 1 cut(s) 942
BsuRI GGCC 5 cut(s) 198, 243, 378, 726, 944
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 2 cut(s) 14, 681
BtsIMutI CAGTG 3 cut(s) 115, 361, 1090
Cac8I GCNNGC 2 cut(s) 324, 1002
CciI TCATGA 1 cut(s) 607
Cfr10I RCCGGY 1 cut(s) 626
Cfr13I GGNCC 1 cut(s) 692
CseI GACGC 1 cut(s) 645
CsiI ACCWGGT 1 cut(s) 694
Csp6I GTAC 5 cut(s) 45, 215, 764, 786, 947
CspAI ACCGGT 1 cut(s) 626
CviQI GTAC 5 cut(s) 45, 215, 764, 786, 947
DdeI CTNAG 4 cut(s) 95, 721, 866, 990
DpnI GATC 1 cut(s) 361
DpnII GATC 1 cut(s) 359
EaeI YGGCCR 4 cut(s) 196, 241, 376, 942
EagI CGGCCG 1 cut(s) 942
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
EciI GGCGGA 1 cut(s) 422
EclXI CGGCCG 1 cut(s) 942
Eco130I CCWWGG 3 cut(s) 223, 317, 379
Eco32I GATATC 1 cut(s) 846
Eco47I GGWCC 1 cut(s) 692
Eco52I CGGCCG 1 cut(s) 942
Eco57I CTGAAG 1 cut(s) 570
EcoRII CCWGG 2 cut(s) 296, 694
EcoRV GATATC 1 cut(s) 846
EcoT14I CCWWGG 3 cut(s) 223, 317, 379
EcoT22I ATGCAT 1 cut(s) 177
ErhI CCWWGG 3 cut(s) 223, 317, 379
FaqI GGGAC 1 cut(s) 105
FauI CCCGC 1 cut(s) 131
Fnu4HI GCNGC 1 cut(s) 1021
FokI GGATG 2 cut(s) 21, 668
Fsp4HI GCNGC 1 cut(s) 1021
FspBI CTAG 5 cut(s) 323, 783, 837, 876, 1120
GluI GCNGC 1 cut(s) 1021
HaeIII GGCC 5 cut(s) 198, 243, 378, 726, 944
HapII CCGG 2 cut(s) 627, 828
HgaI GACGC 1 cut(s) 645
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HindIII AAGCTT 1 cut(s) 718
HinfI GANTC 4 cut(s) 254, 804, 1054, 1112
HpaII CCGG 2 cut(s) 627, 828
HphI GGTGA 3 cut(s) 641, 964, 1065
Hpy166II GTNNAC 3 cut(s) 396, 461, 475
Hpy188I TCNGA 4 cut(s) 259, 292, 561, 991
Hpy188III TCNNGA 6 cut(s) 162, 267, 363, 608, 808, 828
Hpy8I GTNNAC 3 cut(s) 396, 461, 475
HpyAV CCTTC 2 cut(s) 142, 337
HpyCH4III ACNGT 5 cut(s) 119, 479, 523, 748, 908
HpyCH4V TGCA 8 cut(s) 175, 230, 311, 510, 518, 615, 774, 1020
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 717
HpyF3I CTNAG 4 cut(s) 95, 721, 866, 990
Kpn2I TCCGGA 1 cut(s) 827
Kzo9I GATC 1 cut(s) 359
LmnI GCTCC 2 cut(s) 734, 797
Lsp1109I GCAGC 1 cut(s) 1032
LweI GCATC 2 cut(s) 283, 428
MabI ACCWGGT 1 cut(s) 694
MaeI CTAG 5 cut(s) 323, 783, 837, 876, 1120
MaeIII GTNAC 2 cut(s) 961, 1113
MalI GATC 1 cut(s) 361
MboI GATC 1 cut(s) 359
MboII GAAGA 4 cut(s) 322, 440, 563, 764
MfeI CAATTG 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 547
MlsI TGGCCA 3 cut(s) 198, 243, 378
MluNI TGGCCA 3 cut(s) 198, 243, 378
MlyI GAGTC 1 cut(s) 1121
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 3 cut(s) 356, 397, 1092
Mox20I TGGCCA 3 cut(s) 198, 243, 378
Mph1103I ATGCAT 1 cut(s) 177
MroI TCCGGA 1 cut(s) 827
MscI TGGCCA 3 cut(s) 198, 243, 378
MseI TTAA 5 cut(s) 144, 414, 455, 648, 1014
MslI CAYNNNNRTG 2 cut(s) 584, 1049
Msp20I TGGCCA 3 cut(s) 198, 243, 378
MspI CCGG 2 cut(s) 627, 828
MspR9I CCNGG 2 cut(s) 298, 696
MunI CAATTG 1 cut(s) 335
MvaI CCWGG 2 cut(s) 298, 696
MwoI GCNNNNNNNGC 2 cut(s) 138, 717
NcoI CCATGG 1 cut(s) 223
NdeII GATC 1 cut(s) 359
NheI GCTAGC 1 cut(s) 322
NlaIV GGNNCC 7 cut(s) 282, 385, 546, 625, 799, 826, 881
NmuCI GTSAC 2 cut(s) 961, 1113
NsiI ATGCAT 1 cut(s) 177
NspI RCATGY 2 cut(s) 51, 764
PagI TCATGA 1 cut(s) 607
PciI ACATGT 2 cut(s) 47, 760
PfeI GAWTC 3 cut(s) 254, 804, 1054
Pfl23II CGTACG 1 cut(s) 946
PflFI GACNNNGTC 1 cut(s) 696
PflMI CCANNNNNTGG 1 cut(s) 701
PinAI ACCGGT 1 cut(s) 626
PkrI GCNGC 1 cut(s) 1022
PleI GAGTC 1 cut(s) 1120
PpsI GAGTC 1 cut(s) 1120
PscI ACATGT 2 cut(s) 47, 760
PsiI TTATAA 2 cut(s) 32, 210
Psp6I CCWGG 2 cut(s) 296, 694
PspGI CCWGG 2 cut(s) 296, 694
PspLI CGTACG 1 cut(s) 946
PspN4I GGNNCC 7 cut(s) 282, 385, 546, 625, 799, 826, 881
PspPI GGNCC 1 cut(s) 692
PsyI GACNNNGTC 1 cut(s) 696
RsaI GTAC 5 cut(s) 46, 216, 765, 787, 948
RsaNI GTAC 5 cut(s) 45, 215, 764, 786, 947
RseI CAYNNNNRTG 2 cut(s) 584, 1049
SaqAI TTAA 5 cut(s) 144, 414, 455, 648, 1014
SatI GCNGC 1 cut(s) 1021
Sau3AI GATC 1 cut(s) 359
Sau96I GGNCC 1 cut(s) 692
SchI GAGTC 1 cut(s) 1121
ScrFI CCNGG 2 cut(s) 298, 696
SduI GDGCHC 1 cut(s) 547
SetI ASST 8 cut(s) 348, 385, 430, 550, 700, 722, 739, 1103
SexAI ACCWGGT 1 cut(s) 694
SfaNI GCATC 2 cut(s) 283, 428
SinI GGWCC 1 cut(s) 692
SmiMI CAYNNNNRTG 2 cut(s) 584, 1049
SpeI ACTAGT 1 cut(s) 782
SsiI CCGC 3 cut(s) 124, 433, 690
SspI AATATT 2 cut(s) 604, 619
SspMI CTAG 5 cut(s) 323, 783, 837, 876, 1120
StyD4I CCNGG 2 cut(s) 296, 694
StyI CCWWGG 3 cut(s) 223, 317, 379
TaaI ACNGT 5 cut(s) 119, 479, 523, 748, 908
TaqI TCGA 3 cut(s) 219, 935, 1110
TatI WGTACW 4 cut(s) 44, 214, 763, 785
TfiI GAWTC 3 cut(s) 254, 804, 1054
Tru1I TTAA 5 cut(s) 144, 414, 455, 648, 1014
Tru9I TTAA 5 cut(s) 144, 414, 455, 648, 1014
TscAI CASTG 3 cut(s) 122, 361, 1090
TseFI GTSAC 2 cut(s) 961, 1113
TseI GCWGC 1 cut(s) 1020
Tsp45I GTSAC 2 cut(s) 961, 1113
TspDTI ATGAA 8 cut(s) 62, 81, 192, 420, 596, 756, 968, 1067
TspRI CASTG 3 cut(s) 122, 361, 1090
Tth111I GACNNNGTC 1 cut(s) 696
Van91I CCANNNNNTGG 1 cut(s) 701
VpaK11BI GGWCC 1 cut(s) 692
XapI RAATTY 2 cut(s) 179, 261
XceI RCATGY 2 cut(s) 51, 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XspI CTAG 5 cut(s) 323, 783, 837, 876, 1120
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.