Rh3BG087600

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000579
Physical Location & Seq
Forward (+)
6839071 .. 6841117
2047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG087600.1

Sequence Viewer

Length: 186 bp
ATGGGATTCGTAAGGGTGTTGGGGAAGGTGGTGGCACCCAAAACACCGGATGCTTGGAAACAGTGTGAATCAAATTACTGGCTTTCCTTTTCAAATGTGGCAAACCTCAGAATGAATGGCGGTTCAGGAATAATCGACGGCCAAGCGTGGGAAGCTTGGGAGAAAATGGGGCTTACGCAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

61

Amino Acids

6.8

Weight (kDa)

7.9

Isoelectric Point (pI)

23.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000579)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32370 AT4G32375 AT4G32380 AT4G32380
fragaria_vesca FvH4_2g29242 FvH4_2g29270 FvH4_4g07180 FvH4_4g07190 FvH4_6g32320 FvH4_6g35100
malus_domestica MD03G1260700.v1.1 MD03G1260800.v1.1 MD09G1203400.v1.1 MD15G1065500.v1.1 MD15G1124200.v1.1 MD15G1124300.v1.1
prunus_persica Prupe.1G247300_v2.0.a1 Prupe.1G247300_v2.0.a1 Prupe.1G479600_v2.0.a1 Prupe.1G479700_v2.0.a1 Prupe.3G043600_v2.0.a1 Prupe.4G130600_v2.0.a1 Prupe.7G064200_v2.0.a1
pyrus_communis pycom03g20830 pycom15g06200
rosa_chinensis RchiOBHm_Chr2g0140421 RchiOBHm_Chr2g0146281 RchiOBHm_Chr3g0458021 RchiOBHm_Chr3g0481551 RchiOBHm_Chr4g0399361 RchiOBHm_Chr4g0399381 RchiOBHm_Chr4g0399391 RchiOBHm_Chr4g0399401 RchiOBHm_Chr4g0399411 RchiOBHm_Chr4g0399471
rosa_laevigata RLG00000009265 RLG00000009272 RLG00000011536 RLG00000011537 RLG00000019863 RLG00000020193 RLG00000023386
rosa_multiflora Rmu_sc0000384.1_g000011 Rmu_sc0002800.1_g000011 Rmu_sc0002800.1_g000012 Rmu_sc0017309.1_g000001 Rmu_sc0022824.1_g000003
rosa_roxburghii Rroxscaffold_153G00436780 Rroxscaffold_2G00100180 Rroxscaffold_5G00344320 Rroxscaffold_5G00344370 Rroxscaffold_6G00400330 Rroxscaffold_6G00421350 Rroxscaffold_7G00169940 Rroxscaffold_7G00169950
rosa_rugosa Rorug02G0362600 Rorug02G0394100 Rorug03G0024300 Rorug03G0192500 Rorug04G0016900 Rorug04G0017100 Rorug06G0278700
rosa_samantha Rh2CG399600 Rh2CG437200 Rh3AG084800 Rh3BG087600 Rh3CG088100 Rh3DG088500 Rh3DG270800 Rh4BG091900 Rh4BG092300 Rh5AG287300 Rh6DG389600
rosa_wichuraiana Rw0G012400 Rw2G033880 Rw2G036760 Rw3G007220 Rw3G021790 Rw4G007750 Rw4G007770 Rw4G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AciI CCGC 1 cut(s) 120
AcoI YGGCCR 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 1 cut(s) 93
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
AoxI GGCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 34
BceAI ACGGC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 36
BmsI GCATC 1 cut(s) 40
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 83
BshFI GGCC 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 148
BsnI GGCC 1 cut(s) 141
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 34
BsrI ACTGG 1 cut(s) 83
Bst4CI ACNGT 2 cut(s) 63, 183
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 141
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 68
CviJI RGCY 4 cut(s) 82, 141, 155, 172
CviKI_1 RGCY 4 cut(s) 82, 141, 155, 172
DdeI CTNAG 1 cut(s) 107
EaeI YGGCCR 1 cut(s) 139
FokI GGATG 1 cut(s) 62
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 47
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 2 cut(s) 6, 68
HpaII CCGG 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 126
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 63, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 107
LpnPI CCDG 3 cut(s) 60, 64, 111
LweI GCATC 1 cut(s) 40
MluCI AATT 1 cut(s) 73
MnlI CCTC 1 cut(s) 116
MspI CCGG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 36
PfeI GAWTC 2 cut(s) 6, 68
PspN4I GGNNCC 1 cut(s) 36
SetI ASST 3 cut(s) 30, 108, 157
SfaNI GCATC 1 cut(s) 40
SgeI CNNG 7 cut(s) 59, 66, 91, 138, 155, 159, 168
Sse9I AATT 1 cut(s) 73
SsiI CCGC 1 cut(s) 120
TaaI ACNGT 2 cut(s) 63, 183
TaqI TCGA 1 cut(s) 135
TasI AATT 1 cut(s) 73
TfiI GAWTC 2 cut(s) 6, 68
TscAI CASTG 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.