Rorug02G0362600

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000579
Physical Location & Seq
Reverse (-)
45995949 .. 45996622
674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0362600.1

Sequence Viewer

Length: 579 bp
ATGGAAATGGAGTTCAGGTCTGGAGTGGACGACGCATGGTATGCCGTCAAAATTTTGATGGAAGGCAATAGTGCGGAACGACTAAGAGTGAAGTTTTGCGACTTCGAAGACGAGTACGACGAGGTGTACGAGGCCAAGGACCTAACATCAGCTAACCACGTGACGAACTTCCGATCGAGGTTCAGGCCTGTGTCTGTTCAGGTGCAGGACTCGGAATGCCCGAACGTGGTGGAGGGCATGCTCGTGTGTGCCGCCGTTTCTGTTACACCCGACGATTGCCGCTTCTATGATGCTGTTGTGAACCAGGTGAAACGTAAGAAGCATCGAAGTGTGGAAGGAGAAGAAGAATGCCTATGCAAGTTCGTTCTATTCTGGAAACATGAGCCAAAGGGTGGAAGCCTTACGACTCAAGTCGTCGGAGATATCTGTAGAGTCCAGCCTCGGACGGAAGAAGTAGATCCACTTCTGGCCTTGTTTCTACAAACGGCAAGGAGTATGATCCAAACCAATGAGTTGAGCCTTGTTCGTCTTGCTACTTCTTCTACAGTACCTCATGAGGCCTCTTCGAAAGGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

192

Amino Acids

21.74

Weight (kDa)

5.1

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 1 - 143 7.8e-34 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000579)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32370 AT4G32375 AT4G32380 AT4G32380
fragaria_vesca FvH4_2g29242 FvH4_2g29270 FvH4_4g07180 FvH4_4g07190 FvH4_6g32320 FvH4_6g35100
malus_domestica MD03G1260700.v1.1 MD03G1260800.v1.1 MD09G1203400.v1.1 MD15G1065500.v1.1 MD15G1124200.v1.1 MD15G1124300.v1.1
prunus_persica Prupe.1G247300_v2.0.a1 Prupe.1G247300_v2.0.a1 Prupe.1G479600_v2.0.a1 Prupe.1G479700_v2.0.a1 Prupe.3G043600_v2.0.a1 Prupe.4G130600_v2.0.a1 Prupe.7G064200_v2.0.a1
pyrus_communis pycom03g20830 pycom15g06200
rosa_chinensis RchiOBHm_Chr2g0140421 RchiOBHm_Chr2g0146281 RchiOBHm_Chr3g0458021 RchiOBHm_Chr3g0481551 RchiOBHm_Chr4g0399361 RchiOBHm_Chr4g0399381 RchiOBHm_Chr4g0399391 RchiOBHm_Chr4g0399401 RchiOBHm_Chr4g0399411 RchiOBHm_Chr4g0399471
rosa_laevigata RLG00000009265 RLG00000009272 RLG00000011536 RLG00000011537 RLG00000019863 RLG00000020193 RLG00000023386
rosa_multiflora Rmu_sc0000384.1_g000011 Rmu_sc0002800.1_g000011 Rmu_sc0002800.1_g000012 Rmu_sc0017309.1_g000001 Rmu_sc0022824.1_g000003
rosa_roxburghii Rroxscaffold_153G00436780 Rroxscaffold_2G00100180 Rroxscaffold_5G00344320 Rroxscaffold_5G00344370 Rroxscaffold_6G00400330 Rroxscaffold_6G00421350 Rroxscaffold_7G00169940 Rroxscaffold_7G00169950
rosa_rugosa Rorug02G0362600 Rorug02G0394100 Rorug03G0024300 Rorug03G0192500 Rorug04G0016900 Rorug04G0017100 Rorug06G0278700
rosa_samantha Rh2CG399600 Rh2CG437200 Rh3AG084800 Rh3BG087600 Rh3CG088100 Rh3DG088500 Rh3DG270800 Rh4BG091900 Rh4BG092300 Rh5AG287300 Rh6DG389600
rosa_wichuraiana Rw0G012400 Rw2G033880 Rw2G036760 Rw3G007220 Rw3G021790 Rw4G007750 Rw4G007770 Rw4G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 392
AciI CCGC 3 cut(s) 74, 252, 280
AclWI GGATC 2 cut(s) 452, 493
AcsI RAATTY 1 cut(s) 51
AcvI CACGTG 1 cut(s) 160
AfaI GTAC 3 cut(s) 116, 128, 549
AfiI CCNNNNNNNGG 2 cut(s) 226, 392
AjnI CCWGG 1 cut(s) 303
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
AlwI GGATC 2 cut(s) 452, 493
AoxI GGCC 4 cut(s) 132, 185, 468, 558
ApoI RAATTY 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 319
AsuII TTCGAA 2 cut(s) 105, 566
AvaII GGWCC 1 cut(s) 139
BarI GAAGNNNNNNTAC 2 cut(s) 447, 479
BauI CACGAG 1 cut(s) 242
BbrPI CACGTG 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 114
BccI CCATC 1 cut(s) 52
BceAI ACGGC 3 cut(s) 29, 239, 501
BciT130I CCWGG 1 cut(s) 305
BfmI CTRYAG 2 cut(s) 427, 543
BisI GCNGC 2 cut(s) 252, 280
BlsI GCNGC 2 cut(s) 253, 281
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 2 cut(s) 280, 331
BoxI GACNNNNGTC 1 cut(s) 410
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 42
Bpu14I TTCGAA 2 cut(s) 105, 566
BpuEI CTTGAG 1 cut(s) 393
BsaAI YACGTR 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 135, 440
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 392
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 2 cut(s) 135, 440
BseLI CCNNNNNNNGG 2 cut(s) 226, 392
BsgI GTGCAG 1 cut(s) 224
Bsh1285I CGRYCG 1 cut(s) 176
BshFI GGCC 4 cut(s) 134, 187, 470, 560
BsiEI CGRYCG 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 226, 392
BsmI GAATGC 2 cut(s) 221, 353
BsnI GGCC 4 cut(s) 134, 187, 470, 560
Bsp119I TTCGAA 2 cut(s) 105, 566
Bsp143I GATC 3 cut(s) 173, 457, 498
BspACI CCGC 3 cut(s) 74, 252, 280
BspANI GGCC 4 cut(s) 134, 187, 470, 560
BspHI TCATGA 1 cut(s) 553
BspPI GGATC 2 cut(s) 452, 493
BspT104I TTCGAA 2 cut(s) 105, 566
BssECI CCNNGG 2 cut(s) 135, 440
BssMI GATC 3 cut(s) 173, 457, 498
BssSI CACGAG 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 1 cut(s) 568
BstAPI GCANNNNNTGC 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 160
BstBI TTCGAA 2 cut(s) 105, 566
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 83
BstKTI GATC 3 cut(s) 176, 460, 501
BstMBI GATC 3 cut(s) 173, 457, 498
BstMCI CGRYCG 1 cut(s) 176
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 241
BstPAI GACNNNNGTC 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 2 cut(s) 427, 543
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 4 cut(s) 134, 187, 470, 560
Cac8I GCNNGC 1 cut(s) 239
CciI TCATGA 1 cut(s) 553
Cfr13I GGNCC 1 cut(s) 139
CseI GACGC 1 cut(s) 41
CsiI ACCWGGT 1 cut(s) 303
Csp6I GTAC 3 cut(s) 115, 127, 548
CviAII CATG 4 cut(s) 36, 238, 380, 554
CviJI RGCY 9 cut(s) 134, 152, 187, 385, 399, 439, 470, 519, 560
CviKI_1 RGCY 9 cut(s) 134, 152, 187, 385, 399, 439, 470, 519, 560
CviQI GTAC 3 cut(s) 115, 127, 548
DdeI CTNAG 1 cut(s) 83
DpnI GATC 3 cut(s) 175, 459, 500
DpnII GATC 3 cut(s) 173, 457, 498
Eam1104I CTCTTC 1 cut(s) 568
EarI CTCTTC 1 cut(s) 568
Eco130I CCWWGG 1 cut(s) 135
Eco147I AGGCCT 2 cut(s) 187, 560
Eco32I GATATC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 139
Eco72I CACGTG 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 303
EcoRV GATATC 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 4 cut(s) 39, 241, 383, 557
FaiI YATR 8 cut(s) 37, 42, 239, 288, 355, 381, 497, 555
FatI CATG 4 cut(s) 35, 237, 379, 553
Fnu4HI GCNGC 2 cut(s) 252, 280
Fsp4HI GCNGC 2 cut(s) 252, 280
GluI GCNGC 2 cut(s) 252, 280
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 4 cut(s) 134, 187, 470, 560
HgaI GACGC 1 cut(s) 41
Hin1II CATG 4 cut(s) 39, 241, 383, 557
HinfI GANTC 3 cut(s) 209, 406, 432
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 3 cut(s) 28, 127, 301
Hpy188I TCNGA 4 cut(s) 173, 214, 419, 444
Hpy188III TCNNGA 3 cut(s) 21, 373, 554
Hpy8I GTNNAC 3 cut(s) 28, 127, 301
Hpy99I CGWCG 4 cut(s) 35, 122, 275, 419
HpyAV CCTTC 2 cut(s) 56, 329
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 3 cut(s) 159, 225, 313
HpyCH4V TGCA 2 cut(s) 205, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 3 cut(s) 159, 225, 313
Hsp92II CATG 4 cut(s) 39, 241, 383, 557
Kzo9I GATC 3 cut(s) 173, 457, 498
LweI GCATC 2 cut(s) 280, 331
MabI ACCWGGT 1 cut(s) 303
MaeII ACGT 3 cut(s) 159, 225, 313
MaeIII GTNAC 2 cut(s) 160, 262
MalI GATC 3 cut(s) 175, 459, 500
MboI GATC 3 cut(s) 173, 457, 498
MboII GAAGA 6 cut(s) 119, 353, 356, 461, 531, 555
MflI RGATCY 1 cut(s) 457
MluCI AATT 1 cut(s) 51
MlyI GAGTC 3 cut(s) 203, 400, 441
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 8 cut(s) 115, 124, 171, 226, 450, 550, 561, 571
MslI CAYNNNNRTG 2 cut(s) 242, 327
MspR9I CCNGG 1 cut(s) 305
Mva1269I GAATGC 2 cut(s) 221, 353
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 3 cut(s) 173, 457, 498
NlaIII CATG 4 cut(s) 39, 241, 383, 557
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 241
NspV TTCGAA 2 cut(s) 105, 566
PaeI GCATGC 1 cut(s) 241
PagI TCATGA 1 cut(s) 553
PceI AGGCCT 2 cut(s) 187, 560
PcsI WCGNNNNNNNCGW 3 cut(s) 117, 126, 218
PctI GAATGC 2 cut(s) 221, 353
PflMI CCANNNNNTGG 1 cut(s) 392
PkrI GCNGC 2 cut(s) 253, 281
Ple19I CGATCG 1 cut(s) 176
PleI GAGTC 3 cut(s) 203, 400, 440
PmaCI CACGTG 1 cut(s) 160
PmlI CACGTG 1 cut(s) 160
PpsI GAGTC 3 cut(s) 203, 400, 440
Ppu21I YACGTR 1 cut(s) 160
PpuMI RGGWCCY 1 cut(s) 139
PshAI GACNNNNGTC 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 303
PspCI CACGTG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 303
PspPI GGNCC 1 cut(s) 139
PspPPI RGGWCCY 1 cut(s) 139
PsuI RGATCY 1 cut(s) 457
PvuI CGATCG 1 cut(s) 176
RsaI GTAC 3 cut(s) 116, 128, 549
RsaNI GTAC 3 cut(s) 115, 127, 548
RseI CAYNNNNRTG 2 cut(s) 242, 327
SatI GCNGC 2 cut(s) 252, 280
Sau3AI GATC 3 cut(s) 173, 457, 498
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 3 cut(s) 203, 400, 441
ScrFI CCNGG 1 cut(s) 305
SexAI ACCWGGT 1 cut(s) 303
SfaNI GCATC 2 cut(s) 280, 331
SfcI CTRYAG 2 cut(s) 427, 543
SfuI TTCGAA 2 cut(s) 105, 566
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 2 cut(s) 242, 327
SmlI CTYRAG 1 cut(s) 408
SmoI CTYRAG 1 cut(s) 408
SphI GCATGC 1 cut(s) 241
Sse9I AATT 1 cut(s) 51
SseBI AGGCCT 2 cut(s) 187, 560
SsiI CCGC 3 cut(s) 74, 252, 280
StuI AGGCCT 2 cut(s) 187, 560
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 3 cut(s) 162, 228, 316
TaqI TCGA 4 cut(s) 105, 176, 325, 566
TasI AATT 1 cut(s) 51
TauI GCSGC 2 cut(s) 254, 282
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspGWI ACGGA 1 cut(s) 461
Van91I CCANNNNNTGG 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.