Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Reverse (-)

25465816 .. 25467444

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g22450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCAGCTGGAATTCATTGCCTAACTACATGCCTATCCATCCCTTCCAGATTCAGCAAGCTTTCACTCAATGGCCCTTCTACTTCCTCTGCCACTACTCATTCCACAACTTCCCTCAGTTTCTCGGCTACCCTTTCTCCCAATTTCTTCTCCAAAGGGTATCTGGCTGTGAGTCCACTTCAGAGGCCGGTTCGACATTCCATTGTTTGTGAGGTCACCACGAAGAAGCCCGACTCTGCTGTGAAGAGAGCTCGGCAGGCCGAAAAGAGGAGGATTTACAACAAATCCCGCAAATCCGAAATCAAAACCCGGATGAAGAAGGTTTTGGAAGCTCTGGATGGGTTGAAGAAGAAGCCAGATGCTGCACCCGAAGAGGTCCTTTCTATTGAGAAGCTCATTGGAGAGGCATACTCCATCATTGACAAAGCAGTTAAGGTGGGAACTCTGCACAGGAATACTGGAGCACGGAGAAAGTCTCGACTGGCTAGAAGAAAGAAGGCTGTTGAGATCCACCACGGCTGGTACACCCCAACGACAGAGACTGCTAGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S20p

Protein Analysis

185

Amino Acids

20.29

Weight (kDa)

10.37

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	289
AclWI	GGATC	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	5 cut(s)	8, 61, 251, 332, 394
AluI	AGCT	5 cut(s)	8, 61, 251, 332, 394
Alw21I	GWGCWC	2 cut(s)	253, 466
Alw26I	GTCTC	2 cut(s)	480, 533
AlwI	GGATC	1 cut(s)	502
AlwNI	CAGNNNCTG	2 cut(s)	362, 542
AoxI	GGCC	3 cut(s)	73, 185, 258
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	74, 376
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	253
Bbv12I	GWGCWC	2 cut(s)	253, 466
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	3 cut(s)	47, 332, 422
BceAI	ACGGC	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	480, 533
BfaI	CTAG	2 cut(s)	486, 546
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	2 cut(s)	74, 376
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	349
BplI	GAGNNNNNCTC	4 cut(s)	395, 427, 460, 492
BpmI	CTGGAG	1 cut(s)	480
BpuMI	CCSGG	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	514
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	463, 486
Bse3DI	GCAATG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	514
BseGI	GGATG	3 cut(s)	39, 318, 343
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	130
BseNI	ACTGG	2 cut(s)	463, 486
BseRI	GAGGAG	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	349
BsgI	GTGCAG	2 cut(s)	348, 431
BshFI	GGCC	3 cut(s)	75, 187, 260
BsiHKAI	GWGCWC	2 cut(s)	253, 466
BsiSI	CCGG	2 cut(s)	188, 310
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	2 cut(s)	480, 533
BsnI	GGCC	3 cut(s)	75, 187, 260
Bsp1286I	GDGCHC	2 cut(s)	253, 466
Bsp143I	GATC	1 cut(s)	507
BspACI	CCGC	1 cut(s)	289
BspANI	GGCC	3 cut(s)	75, 187, 260
BspCNI	CTCAG	1 cut(s)	129
BspPI	GGATC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	16
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	463, 486
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	514
BssMI	GATC	1 cut(s)	507
Bst6I	CTCTTC	2 cut(s)	239, 366
BstC8I	GCNNGC	2 cut(s)	59, 258
BstDEI	CTNAG	1 cut(s)	116
BstDSI	CCRYGG	1 cut(s)	514
BstEII	GGTNACC	1 cut(s)	214
BstF5I	GGATG	3 cut(s)	39, 318, 343
BstKTI	GATC	1 cut(s)	510
BstMAI	GTCTC	2 cut(s)	480, 533
BstMBI	GATC	1 cut(s)	507
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	33
BstPI	GGTNACC	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	507
BstYI	RGATCY	1 cut(s)	507
BsuRI	GGCC	3 cut(s)	75, 187, 260
BtgI	CCRYGG	1 cut(s)	514
BtsCI	GGATG	3 cut(s)	39, 318, 343
Cac8I	GCNNGC	2 cut(s)	59, 258
CaiI	CAGNNNCTG	2 cut(s)	362, 542
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	74, 376
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	1 cut(s)	30
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	1 cut(s)	509
DpnII	GATC	1 cut(s)	507
Eam1104I	CTCTTC	2 cut(s)	239, 366
EarI	CTCTTC	2 cut(s)	239, 366
Ecl136II	GAGCTC	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	164
Eco91I	GGTNACC	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	376
EcoO65I	GGTNACC	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	253
FaeI	CATG	1 cut(s)	33
FaiI	YATR	2 cut(s)	31, 409
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FatI	CATG	1 cut(s)	29
FauI	CCCGC	1 cut(s)	296
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	3 cut(s)	26, 325, 350
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	2 cut(s)	486, 546
GluI	GCNGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	75, 187, 260
HapII	CCGG	2 cut(s)	188, 310
Hin1II	CATG	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	3 cut(s)	51, 172, 233
HpaII	CCGG	2 cut(s)	188, 310
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	2 cut(s)	176, 525
Hpy188I	TCNGA	2 cut(s)	183, 298
Hpy188III	TCNNGA	3 cut(s)	48, 335, 477
Hpy8I	GTNNAC	2 cut(s)	176, 525
HpyAV	CCTTC	4 cut(s)	54, 87, 313, 490
HpyCH4V	TGCA	2 cut(s)	365, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	461
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	486, 546
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	509
MboI	GATC	1 cut(s)	507
MboII	GAAGA	8 cut(s)	139, 235, 256, 328, 358, 361, 383, 501
MflI	RGATCY	1 cut(s)	507
MhlI	GDGCHC	2 cut(s)	253, 466
MluCI	AATT	2 cut(s)	12, 142
MlyI	GAGTC	2 cut(s)	181, 227
MnlI	CCTC	8 cut(s)	97, 125, 177, 205, 261, 264, 367, 397
MseI	TTAA	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	2 cut(s)	188, 310
MspR9I	CCNGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	1 cut(s)	257
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	1 cut(s)	507
NlaIII	CATG	1 cut(s)	33
NmeAIII	GCCGAG	2 cut(s)	104, 232
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	364
PleI	GAGTC	2 cut(s)	180, 227
PpsI	GAGTC	2 cut(s)	180, 227
PpuMI	RGGWCCY	1 cut(s)	376
Psp124BI	GAGCTC	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	376
PspEI	GGTNACC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	74, 376
PspPPI	RGGWCCY	1 cut(s)	376
PstNI	CAGNNNCTG	2 cut(s)	362, 542
PsuI	RGATCY	1 cut(s)	507
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
SacI	GAGCTC	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	1 cut(s)	507
Sau96I	GGNCC	2 cut(s)	74, 376
SchI	GAGTC	2 cut(s)	181, 227
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	2 cut(s)	253, 466
SetI	ASST	9 cut(s)	10, 63, 216, 253, 324, 334, 378, 396, 438
SfaNI	GCATC	1 cut(s)	349
SinI	GGWCC	1 cut(s)	376
Sse9I	AATT	2 cut(s)	12, 142
SsiI	CCGC	1 cut(s)	289
SspMI	CTAG	2 cut(s)	486, 546
SstI	GAGCTC	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	308
TaqI	TCGA	2 cut(s)	193, 478
TasI	AATT	2 cut(s)	12, 142
TfiI	GAWTC	1 cut(s)	51
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	5, 329
TspGWI	ACGGA	1 cut(s)	481
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	1 cut(s)	12
XceI	RCATGY	1 cut(s)	33
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XspI	CTAG	2 cut(s)	486, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.