Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Forward (+)

13727361 .. 13731688

Gene Structure 4328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG161100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGTTTCCCTTCTCTCACTTTCTCACAATTTCTTCTCCAAAGGGTATTTGTCTGTGAGCCCAAGTCAGAGGTCAGTTTGTCGCTCTGTGGTTTGTGAGGCTGCTCCAACCAAGAGGCTTGATTATGTTGAAAAGCGAGCTCGCCAGGTTGAGAAAAGGCGCATTTACAACAAGTCCAAAAAGTCTGAGATCAAAACCAGGTTGAAGAAGGAGATAGAGGAGGTTCAGAGGCAGAGGAAGTCCCCGATCTGGTGTGTCAGACTGTCAGCTCGACAAATTCCAGCGCATGGTCGATACCTTCACCACCTTTCGATGGAAGCGCCATCAGGTCGATTATATGCAATGGAGCGAGGGCTGAAGATTCCTCAGAACAAGTGCACCAAGACCACCAATTCCCTCTTGATTTCACTCATGAAGCAGCTTGAAAAGCTTGAGCAGAAGCAGAAGTATGCGGCTTGGAAAGCAGCAGATATAAGGAAAGCTGTGAAAGAAGGAAGGAAACCTCAGGCTGGCCCTTTGCAGATAGCATTGGAGGGTAGTTACAAGGAAGAATTTGTTCAAGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S20p

Protein Analysis

189

Amino Acids

21.78

Weight (kDa)

10.18

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	287
AciI	CCGC	1 cut(s)	452
AcsI	RAATTY	3 cut(s)	276, 551, 564
AcuI	CTGAAG	1 cut(s)	377
AfiI	CCNNNNNNNGG	4 cut(s)	249, 287, 313, 509
AgsI	TTSAA	4 cut(s)	131, 205, 425, 560
AjnI	CCWGG	2 cut(s)	144, 197
AluBI	AGCT	5 cut(s)	140, 269, 421, 430, 482
AluI	AGCT	5 cut(s)	140, 269, 421, 430, 482
Alw21I	GWGCWC	2 cut(s)	142, 380
Alw44I	GTGCAC	1 cut(s)	376
AoxI	GGCC	1 cut(s)	511
ApaLI	GTGCAC	1 cut(s)	376
ApeKI	GCWGC	3 cut(s)	101, 418, 464
ApoI	RAATTY	3 cut(s)	276, 551, 564
Asp700I	GAANNNNTTC	1 cut(s)	555
AspLEI	GCGC	3 cut(s)	162, 286, 322
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	1 cut(s)	293
AxyI	CCTNAGG	1 cut(s)	504
BaeGI	GKGCMC	1 cut(s)	380
BanII	GRGCYC	2 cut(s)	62, 142
Bbv12I	GWGCWC	2 cut(s)	142, 380
BbvI	GCAGC	3 cut(s)	88, 430, 476
BccI	CCATC	2 cut(s)	307, 331
BciT130I	CCWGG	2 cut(s)	146, 199
BfoI	RGCGCY	1 cut(s)	323
BisI	GCNGC	4 cut(s)	102, 419, 453, 465
BlsI	GCNGC	4 cut(s)	103, 420, 454, 466
Bme1390I	CCNGG	2 cut(s)	146, 199
BmgT120I	GGNCC	1 cut(s)	512
BmrFI	CCNGG	2 cut(s)	146, 199
BpuEI	CTTGAG	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	4 cut(s)	249, 287, 313, 509
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	146, 199
BseLI	CCNNNNNNNGG	4 cut(s)	249, 287, 313, 509
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	3 cut(s)	177, 380, 518
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	3 cut(s)	88, 430, 476
BshFI	GGCC	1 cut(s)	513
BsiHKAI	GWGCWC	2 cut(s)	142, 380
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	4 cut(s)	249, 287, 313, 509
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	513
Bsp1286I	GDGCHC	3 cut(s)	62, 142, 380
Bsp143I	GATC	2 cut(s)	189, 246
BspACI	CCGC	1 cut(s)	452
BspANI	GGCC	1 cut(s)	513
BspCNI	CTCAG	3 cut(s)	178, 379, 517
BspHI	TCATGA	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	348
BssMI	GATC	2 cut(s)	189, 246
Bst2UI	CCWGG	2 cut(s)	146, 199
Bst4CI	ACNGT	1 cut(s)	264
BstC8I	GCNNGC	3 cut(s)	138, 142, 511
BstDEI	CTNAG	3 cut(s)	186, 366, 504
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	3 cut(s)	162, 286, 322
BstKTI	GATC	2 cut(s)	192, 249
BstMBI	GATC	2 cut(s)	189, 246
BstMWI	GCNNNNNNNGC	2 cut(s)	427, 461
BstNI	CCWGG	2 cut(s)	146, 199
BstSCI	CCNGG	2 cut(s)	144, 197
BstSLI	GKGCMC	1 cut(s)	380
BstV1I	GCAGC	3 cut(s)	88, 430, 476
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	513
Cac8I	GCNNGC	3 cut(s)	138, 142, 511
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	3 cut(s)	162, 286, 322
Cfr13I	GGNCC	1 cut(s)	512
CsiI	ACCWGGT	1 cut(s)	197
CviAII	CATG	2 cut(s)	287, 412
DdeI	CTNAG	3 cut(s)	186, 366, 504
DpnI	GATC	2 cut(s)	191, 248
DpnII	GATC	2 cut(s)	189, 246
Ecl136II	GAGCTC	1 cut(s)	140
Eco24I	GRGCYC	2 cut(s)	62, 142
Eco53kI	GAGCTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	377
Eco81I	CCTNAGG	1 cut(s)	504
EcoICRI	GAGCTC	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	144, 197
EcoT38I	GRGCYC	2 cut(s)	62, 142
FaeI	CATG	2 cut(s)	290, 415
FaiI	YATR	7 cut(s)	126, 288, 337, 339, 413, 450, 473
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	2 cut(s)	286, 411
Fnu4HI	GCNGC	4 cut(s)	102, 419, 453, 465
FriOI	GRGCYC	2 cut(s)	62, 142
Fsp4HI	GCNGC	4 cut(s)	102, 419, 453, 465
GlaI	GCGC	3 cut(s)	161, 285, 321
GluI	GCNGC	4 cut(s)	102, 419, 453, 465
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	513
HhaI	GCGC	3 cut(s)	162, 286, 322
Hin1II	CATG	2 cut(s)	290, 415
Hin6I	GCGC	3 cut(s)	160, 284, 320
HinP1I	GCGC	3 cut(s)	160, 284, 320
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	1 cut(s)	361
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	5 cut(s)	69, 187, 228, 260, 369
Hpy188III	TCNNGA	2 cut(s)	400, 412
Hpy8I	GTNNAC	1 cut(s)	378
HpyAV	CCTTC	5 cut(s)	20, 202, 308, 485, 489
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	341, 378, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	427, 461
HpyF3I	CTNAG	3 cut(s)	186, 366, 504
Hsp92II	CATG	2 cut(s)	290, 415
HspAI	GCGC	3 cut(s)	160, 284, 320
Kzo9I	GATC	2 cut(s)	189, 246
LmnI	GCTCC	2 cut(s)	109, 346
LpnPI	CCDG	9 cut(s)	131, 158, 184, 211, 235, 294, 312, 491, 495
Lsp1109I	GCAGC	3 cut(s)	88, 430, 476
MabI	ACCWGGT	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	2 cut(s)	191, 248
MboI	GATC	2 cut(s)	189, 246
MboII	GAAGA	4 cut(s)	25, 217, 370, 560
MhlI	GDGCHC	3 cut(s)	62, 142, 380
MluCI	AATT	5 cut(s)	28, 276, 391, 551, 564
MmeI	TCCRAC	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	555
MspR9I	CCNGG	2 cut(s)	146, 199
MvaI	CCWGG	2 cut(s)	146, 199
MwoI	GCNNNNNNNGC	2 cut(s)	427, 461
NdeII	GATC	2 cut(s)	189, 246
NlaIII	CATG	2 cut(s)	290, 415
PagI	TCATGA	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	361
PflMI	CCANNNNNTGG	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	103, 420, 454, 466
Psp124BI	GAGCTC	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	144, 197
PspGI	CCWGG	2 cut(s)	144, 197
PspPI	GGNCC	1 cut(s)	512
SacI	GAGCTC	1 cut(s)	142
SatI	GCNGC	4 cut(s)	102, 419, 453, 465
Sau3AI	GATC	2 cut(s)	189, 246
Sau96I	GGNCC	1 cut(s)	512
ScrFI	CCNGG	2 cut(s)	146, 199
SduI	GDGCHC	3 cut(s)	62, 142, 380
SexAI	ACCWGGT	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	5 cut(s)	28, 276, 391, 551, 564
SsiI	CCGC	1 cut(s)	452
SstI	GAGCTC	1 cut(s)	142
StyD4I	CCNGG	2 cut(s)	144, 197
TaaI	ACNGT	1 cut(s)	264
TaqI	TCGA	4 cut(s)	271, 292, 311, 331
TasI	AATT	5 cut(s)	28, 276, 391, 551, 564
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	361
TseI	GCWGC	3 cut(s)	101, 418, 464
TspDTI	ATGAA	1 cut(s)	428
Van91I	CCANNNNNTGG	1 cut(s)	287
VneI	GTGCAC	1 cut(s)	376
XapI	RAATTY	3 cut(s)	276, 551, 564
XmnI	GAANNNNTTC	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.