Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Reverse (-)

73680996 .. 73681991

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG526500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGAGCGAGGGCTGAAGATTCCTCAGAACAAGTGCACCAAGACCACCAATTCCCTCCTGATTTCGCTCATGAAGCAGCTAGAAAAGGTTGAGCATAAGCAGAAGTATGCGGCATTGGAAAGCAGCAAATATAAGGAAAGCTGTGAAAGAAGGAAGGAAACCTCTCGCTGGCCCCCTGTTGGTGATGATGATCTTTCAGTTCCCTCGAGTACAACTAGTGGTTCATATGTATGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

79

Amino Acids

9.08

Weight (kDa)

9.2

Isoelectric Point (pI)

63.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	35
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	2 cut(s)	168, 179
AhlI	ACTAGT	1 cut(s)	215
AluBI	AGCT	2 cut(s)	79, 141
AluI	AGCT	2 cut(s)	79, 141
Alw21I	GWGCWC	1 cut(s)	38
Alw44I	GTGCAC	1 cut(s)	34
Ama87I	CYCGRG	1 cut(s)	205
AoxI	GGCC	1 cut(s)	170
ApaLI	GTGCAC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	76, 123
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	88, 135
BcuI	ACTAGT	1 cut(s)	215
BfaI	CTAG	2 cut(s)	80, 216
BisI	GCNGC	3 cut(s)	77, 111, 124
BlsI	GCNGC	3 cut(s)	78, 112, 125
BmeT110I	CYCGRG	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 179
Bse8I	GATNNNNATC	1 cut(s)	189
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	2 cut(s)	168, 179
BseMII	CTCAG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	88, 135
BshFI	GGCC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	168, 179
BsnI	GGCC	1 cut(s)	172
BsoBI	CYCGRG	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	37
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	173
BssMI	GATC	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	88, 135
BsuRI	GGCC	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	170
CciI	TCATGA	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	4 cut(s)	13, 79, 141, 172
CviKI_1	RGCY	4 cut(s)	13, 79, 141, 172
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	205
FaeI	CATG	1 cut(s)	73
FaiI	YATR	7 cut(s)	71, 96, 108, 132, 226, 228, 232
FatI	CATG	1 cut(s)	69
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	3 cut(s)	77, 111, 124
Fsp4HI	GCNGC	3 cut(s)	77, 111, 124
FspBI	CTAG	2 cut(s)	80, 216
GluI	GCNGC	3 cut(s)	77, 111, 124
HaeIII	GGCC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	73
HinfI	GANTC	1 cut(s)	19
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	2 cut(s)	58, 70
Hpy8I	GTNNAC	1 cut(s)	36
HpyAV	CCTTC	2 cut(s)	144, 148
HpyCH4V	TGCA	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	71, 154, 189
Lsp1109I	GCAGC	2 cut(s)	88, 135
MaeI	CTAG	2 cut(s)	80, 216
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	49
MnlI	CCTC	4 cut(s)	33, 65, 172, 214
MslI	CAYNNNNRTG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	73
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	173
PaeR7I	CTCGAG	1 cut(s)	205
PagI	TCATGA	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	78, 112, 125
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	171
PspXI	VCTCGAGB	1 cut(s)	205
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	229
SatI	GCNGC	3 cut(s)	77, 111, 124
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	4 cut(s)	81, 90, 143, 164
Sfr274I	CTCGAG	1 cut(s)	205
SlaI	CTCGAG	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
SpeI	ACTAGT	1 cut(s)	215
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	2 cut(s)	80, 216
TaqI	TCGA	1 cut(s)	206
TasI	AATT	1 cut(s)	49
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	76, 123
TspDTI	ATGAA	2 cut(s)	86, 213
VneI	GTGCAC	1 cut(s)	34
XhoI	CTCGAG	1 cut(s)	205
XspI	CTAG	2 cut(s)	80, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.