Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Reverse (-)

21818580 .. 21821075

Gene Structure 2496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG214800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGTTTCCCTTCTCTCACTTTCTCACAATTTCTTCTCCAAAGGGTATTTGTCTGTGAGCCCAAGTCAGAGGTCAGTTTGTCGCTCTGTGGTTTGTGAGGCTGCTCCAACCAAGAGGCTTGATTATGTTGAAAAGCGAGCTCGCCAGGTTGAGAAAAGGCGCATTTACAACAAGTCCAAAAAGTCTGAGATCAAAACCAGGTTGAAGAAGGAGATAGAGGAGGTTCAGAGGCAGAGGAAGTCCCCGATCTGGTGTGTCAGACTGTCAACTCGACAAATTCCAGCGCATGGTCGATACCTTCACCACCTTTCGATGGAAGCTCCATCAGGTCGATTATATGCAATGGAGCGAGGGCTGAAGATTCCTCAGAACAAGTGCATCAAGACCACCAATTCCCTCTTGATTTCACTCATGAAGCAGCTTGCAAAGCTTGAGCAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S20p

Protein Analysis

147

Amino Acids

17.11

Weight (kDa)

10.4

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	377
AfiI	CCNNNNNNNGG	3 cut(s)	249, 287, 313
AgsI	TTSAA	2 cut(s)	131, 205
AjnI	CCWGG	2 cut(s)	144, 197
AluBI	AGCT	4 cut(s)	140, 320, 421, 430
AluI	AGCT	4 cut(s)	140, 320, 421, 430
Alw21I	GWGCWC	1 cut(s)	142
ApeKI	GCWGC	2 cut(s)	101, 418
ApoI	RAATTY	1 cut(s)	276
AspLEI	GCGC	2 cut(s)	162, 286
AsuHPI	GGTGA	1 cut(s)	293
BanII	GRGCYC	2 cut(s)	62, 142
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	88, 430
BccI	CCATC	2 cut(s)	307, 331
BciT130I	CCWGG	2 cut(s)	146, 199
BisI	GCNGC	2 cut(s)	102, 419
BlsI	GCNGC	2 cut(s)	103, 420
Bme1390I	CCNGG	2 cut(s)	146, 199
BmrFI	CCNGG	2 cut(s)	146, 199
BmsI	GCATC	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	3 cut(s)	249, 287, 313
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	146, 199
BseLI	CCNNNNNNNGG	3 cut(s)	249, 287, 313
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	2 cut(s)	177, 380
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	88, 430
BsiHKAI	GWGCWC	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	3 cut(s)	249, 287, 313
BsmFI	GGGAC	1 cut(s)	226
Bsp1286I	GDGCHC	2 cut(s)	62, 142
Bsp143I	GATC	2 cut(s)	189, 246
BspCNI	CTCAG	2 cut(s)	178, 379
BspHI	TCATGA	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	348
BssMI	GATC	2 cut(s)	189, 246
Bst2UI	CCWGG	2 cut(s)	146, 199
Bst4CI	ACNGT	1 cut(s)	264
BstC8I	GCNNGC	3 cut(s)	138, 142, 423
BstDEI	CTNAG	2 cut(s)	186, 366
BstHHI	GCGC	2 cut(s)	162, 286
BstKTI	GATC	2 cut(s)	192, 249
BstMBI	GATC	2 cut(s)	189, 246
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNI	CCWGG	2 cut(s)	146, 199
BstSCI	CCNGG	2 cut(s)	144, 197
BstV1I	GCAGC	2 cut(s)	88, 430
Cac8I	GCNNGC	3 cut(s)	138, 142, 423
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	2 cut(s)	162, 286
CsiI	ACCWGGT	1 cut(s)	197
CviAII	CATG	2 cut(s)	287, 412
CviJI	RGCY	8 cut(s)	60, 101, 118, 140, 320, 355, 421, 430
CviKI_1	RGCY	8 cut(s)	60, 101, 118, 140, 320, 355, 421, 430
DdeI	CTNAG	2 cut(s)	186, 366
DpnI	GATC	2 cut(s)	191, 248
DpnII	GATC	2 cut(s)	189, 246
Ecl136II	GAGCTC	1 cut(s)	140
Eco24I	GRGCYC	2 cut(s)	62, 142
Eco53kI	GAGCTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	144, 197
EcoT38I	GRGCYC	2 cut(s)	62, 142
FaeI	CATG	2 cut(s)	290, 415
FaiI	YATR	5 cut(s)	126, 288, 337, 339, 413
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	2 cut(s)	286, 411
Fnu4HI	GCNGC	2 cut(s)	102, 419
FriOI	GRGCYC	2 cut(s)	62, 142
Fsp4HI	GCNGC	2 cut(s)	102, 419
GlaI	GCGC	2 cut(s)	161, 285
GluI	GCNGC	2 cut(s)	102, 419
HhaI	GCGC	2 cut(s)	162, 286
Hin1II	CATG	2 cut(s)	290, 415
Hin6I	GCGC	2 cut(s)	160, 284
HinP1I	GCGC	2 cut(s)	160, 284
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	1 cut(s)	361
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	5 cut(s)	69, 187, 228, 260, 369
Hpy188III	TCNNGA	3 cut(s)	382, 400, 412
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	3 cut(s)	20, 202, 308
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	341, 378, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpyF3I	CTNAG	2 cut(s)	186, 366
Hsp92II	CATG	2 cut(s)	290, 415
HspAI	GCGC	2 cut(s)	160, 284
Kzo9I	GATC	2 cut(s)	189, 246
LmnI	GCTCC	3 cut(s)	109, 325, 346
LpnPI	CCDG	7 cut(s)	131, 158, 184, 211, 235, 294, 312
Lsp1109I	GCAGC	2 cut(s)	88, 430
LweI	GCATC	1 cut(s)	387
MabI	ACCWGGT	1 cut(s)	197
MalI	GATC	2 cut(s)	191, 248
MboI	GATC	2 cut(s)	189, 246
MboII	GAAGA	3 cut(s)	25, 217, 370
MhlI	GDGCHC	2 cut(s)	62, 142
MluCI	AATT	3 cut(s)	28, 276, 391
MmeI	TCCRAC	1 cut(s)	131
MspR9I	CCNGG	2 cut(s)	146, 199
MvaI	CCWGG	2 cut(s)	146, 199
MwoI	GCNNNNNNNGC	1 cut(s)	427
NdeII	GATC	2 cut(s)	189, 246
NlaIII	CATG	2 cut(s)	290, 415
PagI	TCATGA	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	361
PflMI	CCANNNNNTGG	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	103, 420
Psp124BI	GAGCTC	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	144, 197
PspGI	CCWGG	2 cut(s)	144, 197
SacI	GAGCTC	1 cut(s)	142
SatI	GCNGC	2 cut(s)	102, 419
Sau3AI	GATC	2 cut(s)	189, 246
ScrFI	CCNGG	2 cut(s)	146, 199
SduI	GDGCHC	2 cut(s)	62, 142
SexAI	ACCWGGT	1 cut(s)	197
SfaNI	GCATC	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	3 cut(s)	28, 276, 391
SstI	GAGCTC	1 cut(s)	142
StyD4I	CCNGG	2 cut(s)	144, 197
TaaI	ACNGT	1 cut(s)	264
TaqI	TCGA	4 cut(s)	271, 292, 311, 331
TasI	AATT	3 cut(s)	28, 276, 391
TfiI	GAWTC	1 cut(s)	361
TseI	GCWGC	2 cut(s)	101, 418
TspDTI	ATGAA	1 cut(s)	428
Van91I	CCANNNNNTGG	1 cut(s)	287
XapI	RAATTY	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.