Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Reverse (-)

48821987 .. 48823679

Gene Structure 1693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG241400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTCGCAACCATCACTAAGGACGTCAAGGACTCTGAATTCTTCAGCTTCATCACCATGTTTAGGGCCAGCGATAAGTGTTAGAAGGAGAAGAGGAAGACAATTAATGGTGATGATTTTCTGGTATTTGTCTGTGAGCCCAAGTCAGAGGTCAGTTTGTCGCTCTGTGGTTTGTGAGGCTGCTCCAACCAAGAGGCTTGATTATGTTGAAAAGCGAGCTCGCCAGGTTGAAGAAGTGGATGATACGAATACGGAGATAGAGGAGGTTCAGAGGCAGAGGAAGTCCCCGATTTGGTGTGTCAGACTGTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S20p

Protein Analysis

104

Amino Acids

11.91

Weight (kDa)

10.18

Isoelectric Point (pI)

91.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	62, 291
AgsI	TTSAA	2 cut(s)	209, 230
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	3 cut(s)	47, 218, 311
AluI	AGCT	3 cut(s)	47, 218, 311
Alw21I	GWGCWC	1 cut(s)	220
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	37
AseI	ATTAAT	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	45, 121
BanII	GRGCYC	2 cut(s)	140, 220
BbsI	GAAGAC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	224
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	103
BsaHI	GRCGYC	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 291
BseBI	CCWGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	2 cut(s)	62, 291
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	166
BshFI	GGCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	2 cut(s)	62, 291
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	140, 220
BspANI	GGCC	1 cut(s)	67
BssNI	GRCGYC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	306
Bst6I	CTCTTC	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	69, 216, 220
BstDEI	CTNAG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	244
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	244
Cac8I	GCNNGC	3 cut(s)	69, 216, 220
Cfr13I	GGNCC	1 cut(s)	65
CviAII	CATG	1 cut(s)	57
CviJI	RGCY	7 cut(s)	47, 67, 138, 179, 196, 218, 311
CviKI_1	RGCY	7 cut(s)	47, 67, 138, 179, 196, 218, 311
DdeI	CTNAG	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	218
Eco24I	GRGCYC	2 cut(s)	140, 220
Eco53kI	GAGCTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	222
EcoT38I	GRGCYC	2 cut(s)	140, 220
FaeI	CATG	1 cut(s)	60
FaiI	YATR	2 cut(s)	58, 204
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	1 cut(s)	56
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	251
FriOI	GRGCYC	2 cut(s)	140, 220
Fsp4HI	GCNGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	60
HinfI	GANTC	1 cut(s)	31
HphI	GGTGA	2 cut(s)	45, 121
Hpy188I	TCNGA	4 cut(s)	36, 147, 270, 302
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4IV	ACGT	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	17
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	4 cut(s)	81, 106, 209, 236
Lsp1109I	GCAGC	1 cut(s)	166
MaeII	ACGT	1 cut(s)	23
MboII	GAAGA	4 cut(s)	33, 102, 108, 242
MhlI	GDGCHC	2 cut(s)	140, 220
MluCI	AATT	2 cut(s)	37, 101
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	8 cut(s)	86, 141, 169, 186, 253, 256, 264, 270
MseI	TTAA	1 cut(s)	104
MslI	CAYNNNNRTG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
NlaIII	CATG	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	2 cut(s)	140, 220
SetI	ASST	7 cut(s)	26, 49, 152, 220, 228, 267, 313
SmiMI	CAYNNNNRTG	1 cut(s)	55
Sse9I	AATT	2 cut(s)	37, 101
SstI	GAGCTC	1 cut(s)	220
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	306
TaiI	ACGT	1 cut(s)	26
TasI	AATT	2 cut(s)	37, 101
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	39
TspGWI	ACGGA	1 cut(s)	266
VspI	ATTAAT	1 cut(s)	104
XapI	RAATTY	1 cut(s)	37
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.