Rh2BG417900

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001972
Physical Location & Seq
Reverse (-)
58940679 .. 58946193
5515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG417900.1

Sequence Viewer

Length: 546 bp
ATGCCCACCTCCACTAATATTCATCCTGGAAGCATGGATGATACTAATAAGGAGATAGAGGAGGTTCAGAGGCAGAGGAAGTCCCCGATCTGGTGTGTCAGACTGTCAGCTCGACAACTTCCAGGGCATGGTCGATACCTTCACCACCTTTCGATGGAAGCGCAATCAGGCCCTCTTGAGCGGAGGCAGAAGTATGCGGCTTGGAAAGCAGCAGATATAAGGAAAGCTGTGAAAGAAGGAAGGAAACCTCAGGCTGGCCCCCCTCCTAGTGATGATGATCTTTCAGTTCCCTCGAGTACAACTAGTGGTTCATATATTAAGGAAGCAGAGTTCTTGAAGGGGTTGAACATGTTAACCTCATTGAGGCATGAAAATTTAGTGAAATTGAGAGGATTTTGTTGCTCAAGTGGTCGTGGAGAATGCTTTCTCATTTATGAATTTATTCCAAATGGAAGTTTGCTGCGATATCTTGACGTCAAGGAGGGCGACAGCAATGTTCTTGAATGGTCAATAACTAGAGTTTCTATTCCAAAGCTCAGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

181

Amino Acids

20.4

Weight (kDa)

9.14

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 107 - 163 9e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 477
AccB7I CCANNNNNTGG 1 cut(s) 128
AccBSI CCGCTC 1 cut(s) 181
AciI CCGC 2 cut(s) 181, 197
AcsI RAATTY 2 cut(s) 373, 437
AcyI GRCGYC 1 cut(s) 474
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 5 cut(s) 90, 128, 154, 254, 363
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 3 cut(s) 337, 346, 503
AhlI ACTAGT 1 cut(s) 302
AjnI CCWGG 2 cut(s) 25, 121
AloI GAACNNNNNNTCC 2 cut(s) 314, 346
AluBI AGCT 3 cut(s) 110, 227, 535
AluI AGCT 3 cut(s) 110, 227, 535
Ama87I CYCGRG 1 cut(s) 292
AoxI GGCC 2 cut(s) 169, 256
ApeKI GCWGC 2 cut(s) 209, 460
ApoI RAATTY 2 cut(s) 373, 437
Asp700I GAANNNNTTC 2 cut(s) 423, 441
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 2 cut(s) 170, 257
AsuHPI GGTGA 1 cut(s) 134
AvaI CYCGRG 1 cut(s) 292
AxyI CCTNAGG 1 cut(s) 249
BbvI GCAGC 2 cut(s) 221, 447
BccI CCATC 1 cut(s) 148
BciT130I CCWGG 2 cut(s) 27, 123
BcuI ACTAGT 1 cut(s) 302
BfaI CTAG 3 cut(s) 267, 303, 516
BisI GCNGC 3 cut(s) 198, 210, 461
BlsI GCNGC 3 cut(s) 199, 211, 462
Bme1390I CCNGG 2 cut(s) 27, 123
BmeT110I CYCGRG 1 cut(s) 292
BmgT120I GGNCC 2 cut(s) 170, 257
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 2 cut(s) 27, 123
BmsI GCATC 1 cut(s) 530
BpuEI CTTGAG 2 cut(s) 197, 388
BsaBI GATNNNNATC 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 122
Bsc4I CCNNNNNNNGG 5 cut(s) 90, 128, 154, 254, 363
Bse21I CCTNAGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 499
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 2 cut(s) 27, 123
BseDI CCNNGG 1 cut(s) 122
BseGI GGATG 2 cut(s) 22, 43
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 5 cut(s) 90, 128, 154, 254, 363
BseMI GCAATG 1 cut(s) 499
BseMII CTCAG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 2 cut(s) 221, 447
BshFI GGCC 2 cut(s) 171, 258
BsiHKCI CYCGRG 1 cut(s) 292
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 5 cut(s) 90, 128, 154, 254, 363
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 425
BsnI GGCC 2 cut(s) 171, 258
BsoBI CYCGRG 1 cut(s) 292
Bsp143I GATC 2 cut(s) 87, 277
BspACI CCGC 2 cut(s) 181, 197
BspANI GGCC 2 cut(s) 171, 258
BspCNI CTCAG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 259
BsrBI CCGCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 499
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 2 cut(s) 87, 277
BssNI GRCGYC 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 27, 123
Bst4CI ACNGT 1 cut(s) 105
BstACI GRCGYC 1 cut(s) 474
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 2 cut(s) 249, 536
BstENI CCTNNNNNAGG 1 cut(s) 361
BstF5I GGATG 2 cut(s) 22, 43
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 2 cut(s) 90, 280
BstMBI GATC 2 cut(s) 87, 277
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 2 cut(s) 27, 123
BstNSI RCATGY 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 25, 121
BstV1I GCAGC 2 cut(s) 221, 447
Bsu36I CCTNAGG 1 cut(s) 249
BsuRI GGCC 2 cut(s) 171, 258
BtsCI GGATG 2 cut(s) 22, 43
Cac8I GCNNGC 1 cut(s) 256
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 170, 257
Csp6I GTAC 1 cut(s) 297
CviAII CATG 4 cut(s) 34, 128, 349, 368
CviJI RGCY 7 cut(s) 110, 171, 200, 227, 254, 258, 535
CviKI_1 RGCY 7 cut(s) 110, 171, 200, 227, 254, 258, 535
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 2 cut(s) 249, 536
DpnI GATC 2 cut(s) 89, 279
DpnII GATC 2 cut(s) 87, 277
Eco32I GATATC 1 cut(s) 467
Eco81I CCTNAGG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 292
EcoNI CCTNNNNNAGG 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 25, 121
EcoRV GATATC 1 cut(s) 467
FaeI CATG 4 cut(s) 37, 131, 352, 371
FaiI YATR 9 cut(s) 35, 129, 195, 218, 313, 315, 350, 369, 435
FaqI GGGAC 1 cut(s) 67
FatI CATG 4 cut(s) 33, 127, 348, 367
Fnu4HI GCNGC 3 cut(s) 198, 210, 461
FokI GGATG 2 cut(s) 9, 50
Fsp4HI GCNGC 3 cut(s) 198, 210, 461
FspBI CTAG 3 cut(s) 267, 303, 516
GlaI GCGC 1 cut(s) 162
GluI GCNGC 3 cut(s) 198, 210, 461
HaeIII GGCC 2 cut(s) 171, 258
HhaI GCGC 1 cut(s) 163
Hin1I GRCGYC 1 cut(s) 474
Hin1II CATG 4 cut(s) 37, 131, 352, 371
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HpaI GTTAAC 1 cut(s) 354
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 3 cut(s) 69, 101, 539
Hpy188III TCNNGA 4 cut(s) 176, 334, 470, 500
Hpy8I GTNNAC 1 cut(s) 354
HpyAV CCTTC 4 cut(s) 149, 230, 234, 331
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4IV ACGT 1 cut(s) 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 2 cut(s) 249, 536
HpySE526I ACGT 1 cut(s) 474
Hsp92I GRCGYC 1 cut(s) 474
Hsp92II CATG 4 cut(s) 37, 131, 352, 371
HspAI GCGC 1 cut(s) 161
KspAI GTTAAC 1 cut(s) 354
Kzo9I GATC 2 cut(s) 87, 277
LpnPI CCDG 8 cut(s) 12, 39, 76, 108, 135, 153, 236, 240
Lsp1109I GCAGC 2 cut(s) 221, 447
LweI GCATC 1 cut(s) 530
MaeI CTAG 3 cut(s) 267, 303, 516
MaeII ACGT 1 cut(s) 474
MalI GATC 2 cut(s) 89, 279
MbiI CCGCTC 1 cut(s) 181
MboI GATC 2 cut(s) 87, 277
MluCI AATT 3 cut(s) 373, 383, 437
MroXI GAANNNNTTC 2 cut(s) 423, 441
MseI TTAA 2 cut(s) 318, 353
MspR9I CCNGG 2 cut(s) 27, 123
Mva1269I GAATGC 1 cut(s) 425
MvaI CCWGG 2 cut(s) 27, 123
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 2 cut(s) 87, 277
NlaIII CATG 4 cut(s) 37, 131, 352, 371
NlaIV GGNNCC 1 cut(s) 259
NspI RCATGY 1 cut(s) 352
PaeR7I CTCGAG 1 cut(s) 292
PciI ACATGT 1 cut(s) 348
PctI GAATGC 1 cut(s) 425
PdmI GAANNNNTTC 2 cut(s) 423, 441
PflMI CCANNNNNTGG 1 cut(s) 128
PfoI TCCNGGA 1 cut(s) 25
PkrI GCNGC 3 cut(s) 199, 211, 462
PscI ACATGT 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 25, 121
PspGI CCWGG 2 cut(s) 25, 121
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 2 cut(s) 170, 257
PspXI VCTCGAGB 1 cut(s) 292
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 318, 353
SatI GCNGC 3 cut(s) 198, 210, 461
Sau3AI GATC 2 cut(s) 87, 277
Sau96I GGNCC 2 cut(s) 170, 257
ScrFI CCNGG 2 cut(s) 27, 123
SfaNI GCATC 1 cut(s) 530
Sfr274I CTCGAG 1 cut(s) 292
SlaI CTCGAG 1 cut(s) 292
SmlI CTYRAG 3 cut(s) 176, 292, 403
SmoI CTYRAG 3 cut(s) 176, 292, 403
SpeI ACTAGT 1 cut(s) 302
Sse9I AATT 3 cut(s) 373, 383, 437
SsiI CCGC 2 cut(s) 181, 197
SspI AATATT 1 cut(s) 19
SspMI CTAG 3 cut(s) 267, 303, 516
StyD4I CCNGG 2 cut(s) 25, 121
TaaI ACNGT 1 cut(s) 105
TaiI ACGT 1 cut(s) 477
TaqI TCGA 4 cut(s) 112, 133, 152, 293
TasI AATT 3 cut(s) 373, 383, 437
TatI WGTACW 1 cut(s) 296
TauI GCSGC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 318, 353
Tru9I TTAA 2 cut(s) 318, 353
TseI GCWGC 2 cut(s) 209, 460
TspDTI ATGAA 4 cut(s) 11, 300, 384, 450
Van91I CCANNNNNTGG 1 cut(s) 128
XagI CCTNNNNNAGG 1 cut(s) 361
XapI RAATTY 2 cut(s) 373, 437
XceI RCATGY 1 cut(s) 352
XhoI CTCGAG 1 cut(s) 292
XmnI GAANNNNTTC 2 cut(s) 423, 441
XspI CTAG 3 cut(s) 267, 303, 516
ZraI GACGTC 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.