Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Forward (+)

10420639 .. 10423716

Gene Structure 3078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G176000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCAGCTGCTGTTCATTGCCTATCTTCGTGCTTGGCCCTTCCTTCCAAACTCAGCAACCTTTCCCTCAATGGCCCTTCTACTTCTTCTGCAACTCATTCCACCTCAACCCACTTCACTTCTCTCAGTTTCTCCGCTAGCCTTTCTCACAATTTCTTCTCCAAAGGGTATTTTTCATTGAGCCCAGTTCAGAGGCCAACTCGTCGTTCGGTAGTCTGTGAGGTTGCCACAACGAAGAAGCCTGATTCTGCTGAAAAGAGAGCTCGGCAGGCTGAGAAAAGGCGCATTTACCACAAATCCCGGAAATCTGAAATCAAAACCCGGATGAAGAAGGTTTTGGAAGCTTTAGATGTGCTCAGGAAGAAACCAGATGCTACGCCTGAAGAGGTGCTTTCAATTGAGAAGCTCATTGGAGAGGCATACTCCATCATTGACAAAGCAGTGAAAGTGGGAACCTTGCACAGGAATACTGGAGCACGCAGAAAGTCTCGACTGGCCAGAAGAAAGAAGGCTGTAGAGATCCACCACGGCTGGTACACCCCAAATCCTGAAGTTAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S20p

Protein Analysis

188

Amino Acids

20.77

Weight (kDa)

10.34

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	396
AjuI	GAANNNNNNNTTGG	4 cut(s)	190, 222, 320, 352
AluBI	AGCT	4 cut(s)	8, 263, 344, 406
AluI	AGCT	4 cut(s)	8, 263, 344, 406
Alw21I	GWGCWC	3 cut(s)	265, 357, 478
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	514
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	4 cut(s)	36, 73, 194, 495
ApeKI	GCWGC	2 cut(s)	5, 8
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	37, 74
AsuC2I	CCSGG	2 cut(s)	301, 322
AsuNHI	GCTAGC	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	497
BanII	GRGCYC	2 cut(s)	185, 265
Bbv12I	GWGCWC	3 cut(s)	265, 357, 478
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	1 cut(s)	544
BcnI	CCSGG	2 cut(s)	301, 322
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	513
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme1390I	CCNGG	2 cut(s)	301, 322
BmgT120I	GGNCC	2 cut(s)	37, 74
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	2 cut(s)	301, 322
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	1 cut(s)	361
BmtI	GCTAGC	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	179
BplI	GAGNNNNNCTC	4 cut(s)	184, 216, 407, 439
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	356
BpuMI	CCSGG	2 cut(s)	301, 322
BsaJI	CCNNGG	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse1I	ACTGG	3 cut(s)	185, 475, 498
Bse3DI	GCAATG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	4 cut(s)	67, 139, 264, 370
BseNI	ACTGG	3 cut(s)	185, 475, 498
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	4 cut(s)	38, 75, 196, 497
BsiHKAI	GWGCWC	3 cut(s)	265, 357, 478
BsiSI	CCGG	2 cut(s)	301, 322
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	1 cut(s)	492
BsnI	GGCC	4 cut(s)	38, 75, 196, 497
Bsp1286I	GDGCHC	4 cut(s)	185, 265, 357, 478
Bsp143I	GATC	1 cut(s)	519
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	4 cut(s)	38, 75, 196, 497
BspCNI	CTCAG	4 cut(s)	66, 138, 265, 369
BspLI	GGNNCC	1 cut(s)	454
BspOI	GCTAGC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	16
BsrI	ACTGG	3 cut(s)	185, 475, 498
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	1 cut(s)	519
Bst6I	CTCTTC	1 cut(s)	378
BstC8I	GCNNGC	3 cut(s)	139, 270, 478
BstDEI	CTNAG	4 cut(s)	53, 125, 273, 356
BstDSI	CCRYGG	1 cut(s)	526
BstENI	CCTNNNNNAGG	1 cut(s)	460
BstF5I	GGATG	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	1 cut(s)	522
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	1 cut(s)	519
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	299, 320
BstSFI	CTRYAG	1 cut(s)	513
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	519
BstYI	RGATCY	1 cut(s)	519
BsuRI	GGCC	4 cut(s)	38, 75, 196, 497
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	1 cut(s)	330
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	3 cut(s)	139, 270, 478
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	2 cut(s)	37, 74
Csp6I	GTAC	1 cut(s)	535
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	4 cut(s)	53, 125, 273, 356
DpnI	GATC	1 cut(s)	521
DpnII	GATC	1 cut(s)	519
EaeI	YGGCCR	1 cut(s)	495
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Ecl136II	GAGCTC	1 cut(s)	263
Eco24I	GRGCYC	2 cut(s)	185, 265
Eco53kI	GAGCTC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	402
EcoICRI	GAGCTC	1 cut(s)	263
EcoNI	CCTNNNNNAGG	1 cut(s)	460
EcoT38I	GRGCYC	2 cut(s)	185, 265
FaiI	YATR	1 cut(s)	421
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	1 cut(s)	337
FriOI	GRGCYC	2 cut(s)	185, 265
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	2 cut(s)	6, 9
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	4 cut(s)	38, 75, 196, 497
HapII	CCGG	2 cut(s)	301, 322
HhaI	GCGC	1 cut(s)	285
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	2 cut(s)	301, 322
Hpy166II	GTNNAC	1 cut(s)	537
Hpy188I	TCNGA	2 cut(s)	192, 310
Hpy188III	TCNNGA	3 cut(s)	358, 489, 548
Hpy8I	GTNNAC	1 cut(s)	537
Hpy99I	CGWCG	1 cut(s)	207
HpyAV	CCTTC	5 cut(s)	50, 54, 87, 325, 502
HpyCH4V	TGCA	2 cut(s)	92, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	4 cut(s)	53, 125, 273, 356
HspAI	GCGC	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	519
LmnI	GCTCC	1 cut(s)	473
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	138
MalI	GATC	1 cut(s)	521
MboI	GATC	1 cut(s)	519
MboII	GAAGA	8 cut(s)	18, 78, 148, 247, 340, 373, 395, 513
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	519
MhlI	GDGCHC	4 cut(s)	185, 265, 357, 478
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	2 cut(s)	151, 396
MluNI	TGGCCA	1 cut(s)	497
MnlI	CCTC	6 cut(s)	77, 115, 186, 214, 379, 409
Mox20I	TGGCCA	1 cut(s)	497
MscI	TGGCCA	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	2 cut(s)	301, 322
MspR9I	CCNGG	2 cut(s)	301, 322
MunI	CAATTG	1 cut(s)	396
MwoI	GCNNNNNNNGC	1 cut(s)	269
NciI	CCSGG	2 cut(s)	301, 322
NdeII	GATC	1 cut(s)	519
NheI	GCTAGC	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	454
NmeAIII	GCCGAG	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	245
PfoI	TCCNGGA	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	7, 10
Psp124BI	GAGCTC	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	2 cut(s)	37, 74
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	519
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
SacI	GAGCTC	1 cut(s)	265
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	1 cut(s)	519
Sau96I	GGNCC	2 cut(s)	37, 74
ScrFI	CCNGG	2 cut(s)	301, 322
SduI	GDGCHC	4 cut(s)	185, 265, 357, 478
SfaNI	GCATC	1 cut(s)	361
SfcI	CTRYAG	1 cut(s)	513
Sse9I	AATT	2 cut(s)	151, 396
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	1 cut(s)	138
SstI	GAGCTC	1 cut(s)	265
StyD4I	CCNGG	2 cut(s)	299, 320
TaqI	TCGA	1 cut(s)	490
TasI	AATT	2 cut(s)	151, 396
TfiI	GAWTC	1 cut(s)	245
TscAI	CASTG	1 cut(s)	447
TseI	GCWGC	2 cut(s)	5, 8
TspDTI	ATGAA	3 cut(s)	5, 165, 341
TspRI	CASTG	1 cut(s)	447
XagI	CCTNNNNNAGG	1 cut(s)	460
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.