Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Forward (+)

14412039 .. 14416151

Gene Structure 4113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG155500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGATGTCTATAACTAGAAAACAAGTGTACTCTCTTGCCCCCAATTCGATGCCTCTAGAGAGAACCCCCTCACGGCTCATCGATTACTCAGAGATAGAGGAGGTTCAGAGGCAGAGGAAGTCCCCGATCTGGTGTGTCAGACTGTCAGCTCGACAAATTCCAGCGCATGGTCGATACCTTCACCACCTTTCGATGGAAGCGCCATCAGGTCGATTATATGCAATGGAGCGAGGGCTGAAGATTCCTCAGAACAAGTGCACCAAGACCACCAATTCCCTCTTGATTTCACTCATGAAGCAGCTTGAAAAGCTTGAGCAGAAGCAGAAGTATGCGGCTTGGAAAGCAGCAGATATAAGGAAAGCTGTGAAAGAAGGAAGGAAACCTCAGGCTGGCCCTTTGCAGATAGCATTGGAGGGTAGTTACAAGGAAGAATTTGTTCAAGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

149

Amino Acids

17.12

Weight (kDa)

9.92

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AciI	CCGC	1 cut(s)	332
AcsI	RAATTY	3 cut(s)	156, 431, 444
AcuI	CTGAAG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	5 cut(s)	72, 129, 167, 193, 389
AgsI	TTSAA	2 cut(s)	305, 440
AluBI	AGCT	4 cut(s)	149, 301, 310, 362
AluI	AGCT	4 cut(s)	149, 301, 310, 362
Alw21I	GWGCWC	1 cut(s)	260
Alw44I	GTGCAC	1 cut(s)	256
AoxI	GGCC	1 cut(s)	391
ApaLI	GTGCAC	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	298, 344
ApoI	RAATTY	3 cut(s)	156, 431, 444
Asp700I	GAANNNNTTC	1 cut(s)	435
AspLEI	GCGC	2 cut(s)	166, 202
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	173
AxyI	CCTNAGG	1 cut(s)	384
BaeGI	GKGCMC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	310, 356
BccI	CCATC	2 cut(s)	187, 211
BceAI	ACGGC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	15, 56
BfoI	RGCGCY	1 cut(s)	203
BisI	GCNGC	3 cut(s)	299, 333, 345
BlsI	GCNGC	3 cut(s)	300, 334, 346
BmgT120I	GGNCC	1 cut(s)	392
BmsI	GCATC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	332
Bsa29I	ATCGAT	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	5 cut(s)	72, 129, 167, 193, 389
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	81
BseLI	CCNNNNNNNGG	5 cut(s)	72, 129, 167, 193, 389
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	3 cut(s)	102, 260, 398
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	310, 356
BshFI	GGCC	1 cut(s)	393
BshVI	ATCGAT	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	5 cut(s)	72, 129, 167, 193, 389
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	3 cut(s)	101, 259, 397
BspDI	ATCGAT	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	228
BssMI	GATC	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	3 cut(s)	88, 246, 384
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	166, 202
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 341
BstSLI	GKGCMC	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	310, 356
Bsu15I	ATCGAT	1 cut(s)	81
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	393
BsuTUI	ATCGAT	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	391
CciI	TCATGA	1 cut(s)	291
CfoI	GCGC	2 cut(s)	166, 202
Cfr13I	GGNCC	1 cut(s)	392
ClaI	ATCGAT	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	2 cut(s)	167, 292
CviJI	RGCY	9 cut(s)	76, 149, 235, 301, 310, 335, 362, 389, 393
CviKI_1	RGCY	9 cut(s)	76, 149, 235, 301, 310, 335, 362, 389, 393
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	3 cut(s)	88, 246, 384
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	257
Eco81I	CCTNAGG	1 cut(s)	384
FaeI	CATG	2 cut(s)	170, 295
FaiI	YATR	7 cut(s)	11, 168, 217, 219, 293, 330, 353
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	2 cut(s)	166, 291
Fnu4HI	GCNGC	3 cut(s)	299, 333, 345
Fsp4HI	GCNGC	3 cut(s)	299, 333, 345
FspBI	CTAG	2 cut(s)	15, 56
GlaI	GCGC	2 cut(s)	165, 201
GluI	GCNGC	3 cut(s)	299, 333, 345
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	393
HhaI	GCGC	2 cut(s)	166, 202
Hin1II	CATG	2 cut(s)	170, 295
Hin6I	GCGC	2 cut(s)	164, 200
HinP1I	GCGC	2 cut(s)	164, 200
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	1 cut(s)	241
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	28, 258
Hpy188I	TCNGA	4 cut(s)	91, 108, 140, 249
Hpy188III	TCNNGA	3 cut(s)	56, 280, 292
Hpy8I	GTNNAC	2 cut(s)	28, 258
HpyAV	CCTTC	3 cut(s)	188, 365, 369
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4V	TGCA	3 cut(s)	221, 258, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 341
HpyF3I	CTNAG	3 cut(s)	88, 246, 384
Hsp92II	CATG	2 cut(s)	170, 295
HspAI	GCGC	2 cut(s)	164, 200
Kzo9I	GATC	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	5 cut(s)	115, 174, 192, 371, 375
Lsp1109I	GCAGC	2 cut(s)	310, 356
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	2 cut(s)	15, 56
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	2 cut(s)	250, 440
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	5 cut(s)	43, 156, 271, 431, 444
MroXI	GAANNNNTTC	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	307, 341
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	2 cut(s)	170, 295
PagI	TCATGA	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	241
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	300, 334, 346
PspPI	GGNCC	1 cut(s)	392
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SatI	GCNGC	3 cut(s)	299, 333, 345
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	9 cut(s)	105, 151, 180, 189, 211, 303, 312, 364, 385
SfaNI	GCATC	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	5 cut(s)	43, 156, 271, 431, 444
SsiI	CCGC	1 cut(s)	332
SspMI	CTAG	2 cut(s)	15, 56
TaaI	ACNGT	1 cut(s)	144
TaqI	TCGA	6 cut(s)	47, 81, 151, 172, 191, 211
TasI	AATT	5 cut(s)	43, 156, 271, 431, 444
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	298, 344
TspDTI	ATGAA	1 cut(s)	308
Van91I	CCANNNNNTGG	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	256
XapI	RAATTY	3 cut(s)	156, 431, 444
XbaI	TCTAGA	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	2 cut(s)	15, 56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.