Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009552

Physical Location & Seq

Genomic Coordinates Forward (+)

26935410 .. 26939182

Gene Structure 3773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033419

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAAGCTATTCTCTGTCTCCCCCCATGTGGCATCAGTGGTTTCAAAGTCAAATCTACTTAGACTTTTCGAAGCAGAAATTAACTCCAATGATACCCTTGCAACCTTAAATGATATGGAGCTTTTGTATGAGTTATCAGAGATCAAGCATGGTAGAGTTTTTTTGTCAACAAGCACCCTTCTGCAGCTGCTTAGTTCTATAATAAGCAACCAGTTAATGGACTCAATTCTAAAATCAAAGGCGATGATGATCAGTGGAAGACTGCTGTCGAATGAGAATTACATTTTGTCTGATGAATCCAGTGTGAAGACTCTGGTATTAGCCATAGATAGAATACTTAGTTCATCAGAAACTCATGATACAGATGAATGTGAATCTGCTCTTGAAGCTCTGGGTCAAATAGGGTCATCAATGCAAGGAGCGCAATTGCTACTGTCAAGCTCACCACCAGCTGTAAAATATGTCATCTATTCTGCCTTTGATAGGCAGGGACATGGTAGACAACTGGCTGCCTTGCATGCCCTTGCAAACATCGCTGGAGAAACTCAATCTGAGAACAGCATAATACTGACCAGTGATGGTATATTCCTCTCAGTTTTCCAGCAGGATCCAGAGACTCGTTTGGAGGTGAGGGTTTATAGGGTGCTGACTGGGTTGGCGGCTCGCCCGTGGTGCCTCATGGAGATTTGCTCAAAGCGAGAGATAATAAATATAGTGACTGATGCCGCTACTGAAACCACAAAACTAGGTCCTTCTCTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005838 GO:0008150 GO:0008540 GO:0009987 GO:0016043 GO:0022607 GO:0022624 GO:0032991 GO:0034622 GO:0043248 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0065003 GO:0070682 GO:0071840 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Proteasom_PSMB

Protein Analysis

255

Amino Acids

27.75

Weight (kDa)

5.06

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15180 AT3G15180
fragaria_vesca	FvH4_3g19420 FvH4_3g19420
malus_domestica	MD03G1232700.v1.1 MD11G1253400.v1.1 MD11G1279000.v1.1
prunus_persica	Prupe.4G175900_v2.0.a1
pyrus_communis	pycom03g17950
rosa_chinensis	RchiOBHm_Chr5g0032701
rosa_laevigata	RLG00000033417 RLG00000033419
rosa_multiflora	Rmu_sc0002292.1_g000008
rosa_roxburghii	Rroxscaffold_1G00047400 Rroxscaffold_1G00047860
rosa_rugosa	Rorug05G0133100 Rorug05G0133200
rosa_samantha	Rh5AG225600 Rh5BG226800 Rh5CG254300 Rh5DG231400
rosa_wichuraiana	Rw5G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	672
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccI	GTMKAC	1 cut(s)	499
AciI	CCGC	2 cut(s)	659, 726
AclWI	GGATC	2 cut(s)	602, 615
AfiI	CCNNNNNNNGG	3 cut(s)	28, 217, 483
AgsI	TTSAA	2 cut(s)	45, 386
AluBI	AGCT	6 cut(s)	7, 121, 187, 389, 441, 452
AluI	AGCT	6 cut(s)	7, 121, 187, 389, 441, 452
Alw26I	GTCTC	2 cut(s)	22, 608
AlwI	GGATC	2 cut(s)	602, 615
ApeKI	GCWGC	3 cut(s)	184, 187, 509
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	749
AsuHPI	GGTGA	2 cut(s)	435, 640
AsuII	TTCGAA	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	749
BamHI	GGATCC	1 cut(s)	607
BanI	GGYRCC	1 cut(s)	672
BbsI	GAAGAC	2 cut(s)	265, 314
BbvI	GCAGC	3 cut(s)	174, 196, 496
BccI	CCATC	1 cut(s)	572
BclI	TGATCA	1 cut(s)	249
BcoDI	GTCTC	2 cut(s)	22, 608
BfaI	CTAG	1 cut(s)	746
BfmI	CTRYAG	1 cut(s)	182
BisI	GCNGC	5 cut(s)	185, 188, 510, 660, 726
BlsI	GCNGC	5 cut(s)	186, 189, 511, 661, 727
Bme18I	GGWCC	1 cut(s)	749
BmgT120I	GGNCC	1 cut(s)	749
BmiI	GGNNCC	2 cut(s)	609, 674
BmrI	ACTGGG	1 cut(s)	660
BmsI	GCATC	2 cut(s)	41, 712
BmuI	ACTGGG	1 cut(s)	660
BoxI	GACNNNNGTC	1 cut(s)	265
BpiI	GAAGAC	2 cut(s)	265, 314
BplI	GAGNNNNNCTC	2 cut(s)	674, 706
BpmI	CTGGAG	1 cut(s)	558
Bpu14I	TTCGAA	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	668
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 217, 483
Bse1I	ACTGG	5 cut(s)	211, 300, 510, 573, 655
Bse8I	GATNNNNATC	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	668
BseJI	GATNNNNATC	1 cut(s)	248
BseLI	CCNNNNNNNGG	3 cut(s)	28, 217, 483
BseMII	CTCAG	2 cut(s)	543, 606
BseNI	ACTGG	5 cut(s)	211, 300, 510, 573, 655
BseXI	GCAGC	3 cut(s)	174, 196, 496
BshNI	GGYRCC	1 cut(s)	672
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	3 cut(s)	28, 217, 483
BsmAI	GTCTC	2 cut(s)	22, 608
BsmFI	GGGAC	1 cut(s)	504
Bsp119I	TTCGAA	1 cut(s)	69
Bsp143I	GATC	3 cut(s)	141, 249, 607
BspACI	CCGC	2 cut(s)	659, 726
BspCNI	CTCAG	2 cut(s)	544, 605
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	609, 674
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	2 cut(s)	602, 615
BspT104I	TTCGAA	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	672
BsrI	ACTGG	5 cut(s)	211, 300, 510, 573, 655
BssECI	CCNNGG	1 cut(s)	668
BssMI	GATC	3 cut(s)	141, 249, 607
Bst4CI	ACNGT	1 cut(s)	435
BstBI	TTCGAA	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	519, 664
BstDEI	CTNAG	5 cut(s)	59, 191, 338, 552, 592
BstDSI	CCRYGG	1 cut(s)	668
BstENI	CCTNNNNNAGG	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	3 cut(s)	144, 252, 610
BstMAI	GTCTC	2 cut(s)	22, 608
BstMBI	GATC	3 cut(s)	141, 249, 607
BstMWI	GCNNNNNNNGC	5 cut(s)	386, 421, 518, 533, 672
BstNSI	RCATGY	1 cut(s)	521
BstPAI	GACNNNNGTC	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	182
BstV1I	GCAGC	3 cut(s)	174, 196, 496
BstV2I	GAAGAC	2 cut(s)	265, 314
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BtgI	CCRYGG	1 cut(s)	668
BtgZI	GCGATG	2 cut(s)	257, 517
BtsIMutI	CAGTG	4 cut(s)	42, 259, 307, 580
Cac8I	GCNNGC	2 cut(s)	519, 664
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	749
CviAII	CATG	6 cut(s)	26, 149, 356, 494, 518, 679
CviJI	RGCY	9 cut(s)	7, 121, 187, 323, 389, 441, 452, 509, 662
CviKI_1	RGCY	9 cut(s)	7, 121, 187, 323, 389, 441, 452, 509, 662
DdeI	CTNAG	5 cut(s)	59, 191, 338, 552, 592
DpnI	GATC	3 cut(s)	143, 251, 609
DpnII	GATC	3 cut(s)	141, 249, 607
Eco47I	GGWCC	1 cut(s)	749
EcoNI	CCTNNNNNAGG	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	749
FaeI	CATG	6 cut(s)	29, 152, 359, 497, 521, 682
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	6 cut(s)	25, 148, 355, 493, 517, 678
FbaI	TGATCA	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	499
Fnu4HI	GCNGC	5 cut(s)	185, 188, 510, 660, 726
Fsp4HI	GCNGC	5 cut(s)	185, 188, 510, 660, 726
FspBI	CTAG	1 cut(s)	746
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	5 cut(s)	185, 188, 510, 660, 726
GsuI	CTGGAG	1 cut(s)	558
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	6 cut(s)	29, 152, 359, 497, 521, 682
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	5 cut(s)	221, 296, 310, 374, 616
HphI	GGTGA	2 cut(s)	435, 640
Hpy166II	GTNNAC	2 cut(s)	168, 500
Hpy188I	TCNGA	4 cut(s)	139, 292, 349, 553
Hpy188III	TCNNGA	3 cut(s)	356, 383, 611
Hpy8I	GTNNAC	2 cut(s)	168, 500
HpyAV	CCTTC	2 cut(s)	188, 762
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4V	TGCA	5 cut(s)	101, 184, 415, 517, 527
HpyF10VI	GCNNNNNNNGC	5 cut(s)	386, 421, 518, 533, 672
HpyF3I	CTNAG	5 cut(s)	59, 191, 338, 552, 592
Hsp92II	CATG	6 cut(s)	29, 152, 359, 497, 521, 682
HspAI	GCGC	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	141, 249, 607
LmnI	GCTCC	2 cut(s)	118, 419
Lsp1109I	GCAGC	3 cut(s)	174, 196, 496
LweI	GCATC	2 cut(s)	41, 712
MaeI	CTAG	1 cut(s)	746
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	3 cut(s)	143, 251, 609
MboI	GATC	3 cut(s)	141, 249, 607
MboII	GAAGA	2 cut(s)	270, 319
MfeI	CAATTG	1 cut(s)	425
MflI	RGATCY	1 cut(s)	607
MluCI	AATT	4 cut(s)	78, 225, 277, 425
MlyI	GAGTC	3 cut(s)	215, 304, 610
MnlI	CCTC	4 cut(s)	599, 619, 624, 686
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	81, 107, 215
MspA1I	CMGCKG	2 cut(s)	187, 452
MunI	CAATTG	1 cut(s)	425
MwoI	GCNNNNNNNGC	5 cut(s)	386, 421, 518, 533, 672
NdeII	GATC	3 cut(s)	141, 249, 607
NlaIII	CATG	6 cut(s)	29, 152, 359, 497, 521, 682
NlaIV	GGNNCC	2 cut(s)	609, 674
NmuCI	GTSAC	1 cut(s)	715
NspI	RCATGY	1 cut(s)	521
NspV	TTCGAA	1 cut(s)	69
PaeI	GCATGC	1 cut(s)	521
PagI	TCATGA	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	296, 374
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	5 cut(s)	186, 189, 511, 661, 727
PleI	GAGTC	3 cut(s)	215, 304, 610
PpsI	GAGTC	3 cut(s)	215, 304, 610
PpuMI	RGGWCCY	1 cut(s)	749
PshAI	GACNNNNGTC	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	749
PspN4I	GGNNCC	2 cut(s)	609, 674
PspPI	GGNCC	1 cut(s)	749
PspPPI	RGGWCCY	1 cut(s)	749
PstI	CTGCAG	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	607
PvuII	CAGCTG	2 cut(s)	187, 452
SaqAI	TTAA	3 cut(s)	81, 107, 215
SatI	GCNGC	5 cut(s)	185, 188, 510, 660, 726
Sau3AI	GATC	3 cut(s)	141, 249, 607
Sau96I	GGNCC	1 cut(s)	749
SchI	GAGTC	3 cut(s)	215, 304, 610
SetI	ASST	9 cut(s)	9, 107, 123, 189, 391, 443, 454, 630, 751
SfaNI	GCATC	2 cut(s)	41, 712
SfcI	CTRYAG	1 cut(s)	182
SfuI	TTCGAA	1 cut(s)	69
SinI	GGWCC	1 cut(s)	749
SphI	GCATGC	1 cut(s)	521
Sse9I	AATT	4 cut(s)	78, 225, 277, 425
SsiI	CCGC	2 cut(s)	659, 726
SspMI	CTAG	1 cut(s)	746
TaaI	ACNGT	1 cut(s)	435
TaqI	TCGA	2 cut(s)	69, 269
TasI	AATT	4 cut(s)	78, 225, 277, 425
TauI	GCSGC	2 cut(s)	662, 728
TfiI	GAWTC	2 cut(s)	296, 374
Tru1I	TTAA	3 cut(s)	81, 107, 215
Tru9I	TTAA	3 cut(s)	81, 107, 215
TscAI	CASTG	4 cut(s)	42, 259, 307, 580
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	3 cut(s)	184, 187, 509
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	5 cut(s)	17, 309, 333, 381, 750
TspRI	CASTG	4 cut(s)	42, 259, 307, 580
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	749
XagI	CCTNNNNNAGG	1 cut(s)	481
XceI	RCATGY	1 cut(s)	521
XmiI	GTMKAC	1 cut(s)	499
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.