Prupe.4G175900_v2.0.a1

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
10413370 .. 10420191
6822 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G175900.1

Sequence Viewer

Length: 1572 bp
ATGGAGGAGTTCTCGGTGGACGACCCAACTCAGCTACTACAAGCTGCTTCAGATTTCGCAAATTACCCTGGTCTTCAGAACGACGCTTCAGCTAAGGACTTTCTGGATCGCTTCCCCCTTCCTGTCATTCTTAATGCTTTACAAACCAAAGCCGATGTACCTGGTCTAGAAAGTACATTGATTGCTGCTTTGGAAAGGGTATTCCAGACAAAATATGGTGCTTCTCTCATACCCCACTATATGCCTTTCATACAAGTTGGCCTGACAGCAGAGTCTCATGAAGTCAAATCTTTAGCATGTAAAACGGTTACTTACCTTCTGGAGAATTTGAATGAAGGTGCTATTTCTGCAGTACGTCTTATAGTTGAGCACAATATATATCCTCTTTTGCTTGATTGCCTCATTAATGGCAATGAAAGAGTTGCAACTCTTTCAACGGATGCAATAGGGAAGATGGCTAGTTCTCCAGCAGGCATGGATGTTGTTTTCCCAGCTAATACCAATGAAGCTACCCATCTTGGAGCTTTAGCAGCCCAGTGTTCATCACTGGGACGGGTCCGGGTTTTGGCTTTGATAGTGAAGCTATTCTCTATCTCCAGTTATGTGGCATCAGCAATTCACAGGTCAAATCTGCTCAGACTTTTTGAGGCAGAAATCAACAACACAAATGATACCCTTGCAACCTTGAGCGTTTTGGAGATTATGTATGAGTTGTCCGAGGTCGAGCATGGTAGAGAGTTTTTGTCAACAAGCACCCTTCTGCAACTGCTTAGTTCTATAATCAGCAATAAATCAATGGAATCAGTTTTAAGATCAAGAGCAATGATGATCAGTGGAAGACTTCTGTCCAAGGGGAATTACATGTTTGCTGATGAACTTAGTGTAAAAACTGTAGTATCAGCCATAGATAGGATACTTAGTTCATCAGAAACTCAAGATGCAGATGAGTGTGAATCTGCTCTTGAAGCACTGGGTGAAATAGGGTCATCAATTCAAGGGGCGCAATTTCTACTTTCAAGCTCACCACCAGCTGCAAGACATGTTATTTATGCTGCCTTTGATAGGCAAGGACGTGGTAAACAACTGGCTGCTTTACATGCCCTTGGAAACATCTTTGGAGAAACTCGGTCTGAAAACAGCATGATACTGACTAGTGATGCAGAGGAAAGCCTCAGACGCTTAATTTATGAAACTGCATCTAAGAGCTCAAAGTTGACACCATCTGGTATTTTCCTCTCTGTTCTCAAACAGGATTCAGAAACTCGTTTGGCGGGTTATAGAATGCTGACTGGGTTGGTGGCTCGCCCATGGTGCCTCATGGAAATTTGCTCGAAGCAAGAGATAATAAATATAGTGACCGATGCAACTACTGAAACCACAAAATTAGGTATGGAAGCCAGATATAATTGCTGCAAGGCAATCCAGAAGGCTTTTATCATGTCAAGTAAAGTTAGCAGTGATCCAGCTCTTGCTGGGCTTGCTGAAAAGTTGTATGATGCTGTTAGAAAGGGTCCCTATCTTGCTAAACGGCTTGAAGCTCAGCCTACAGTGGTGACAGATGACAGATTCTAG

Protein Analysis

524

Amino Acids

56.93

Weight (kDa)

5.33

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 271
AccB1I GGYRCC 1 cut(s) 1311
AciI CCGC 1 cut(s) 1271
AclWI GGATC 2 cut(s) 114, 1454
AcsI RAATTY 2 cut(s) 325, 1323
AcuI CTGAAG 3 cut(s) 33, 59, 72
AdeI CACNNNGTG 1 cut(s) 974
AfaI GTAC 3 cut(s) 159, 175, 354
AfiI CCNNNNNNNGG 3 cut(s) 565, 909, 1062
AflIII ACRYGT 2 cut(s) 861, 1039
AgsI TTSAA 6 cut(s) 331, 435, 965, 995, 1017, 1535
AhlI ACTAGT 1 cut(s) 1151
AjiI CACGTC 1 cut(s) 1073
AjnI CCWGG 2 cut(s) 67, 160
AloI GAACNNNNNNTCC 2 cut(s) 904, 936
Alw21I GWGCWC 2 cut(s) 372, 1208
Alw26I GTCTC 1 cut(s) 279
AlwI GGATC 2 cut(s) 114, 1454
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 7 cut(s) 44, 185, 530, 1031, 1052, 1088, 1410
ApoI RAATTY 2 cut(s) 325, 1323
AseI ATTAAT 1 cut(s) 405
Asp700I GAANNNNTTC 1 cut(s) 584
AspLEI GCGC 1 cut(s) 1003
AspS9I GGNCC 2 cut(s) 556, 1511
AsuC2I CCSGG 1 cut(s) 560
AsuHPI GGTGA 3 cut(s) 986, 1014, 1564
AvaII GGWCC 2 cut(s) 556, 1511
BaeI ACNNNNGTAYC 2 cut(s) 879, 912
BanI GGYRCC 1 cut(s) 1311
BanII GRGCYC 1 cut(s) 1208
BbsI GAAGAC 2 cut(s) 65, 844
Bbv12I GWGCWC 2 cut(s) 372, 1208
BbvI GCAGC 7 cut(s) 31, 172, 542, 1018, 1039, 1075, 1397
BccI CCATC 3 cut(s) 448, 522, 1228
BceAI ACGGC 1 cut(s) 1544
BciT130I CCWGG 2 cut(s) 69, 162
BciVI GTATCC 1 cut(s) 906
BclI TGATCA 1 cut(s) 828
BcnI CCSGG 1 cut(s) 560
BcoDI GTCTC 1 cut(s) 279
BcuI ACTAGT 1 cut(s) 1151
BfaI CTAG 4 cut(s) 167, 459, 1152, 1570
BfmI CTRYAG 3 cut(s) 348, 891, 1545
BfuI GTATCC 1 cut(s) 906
BisI GCNGC 7 cut(s) 45, 186, 531, 1032, 1053, 1089, 1411
BlpI GCTNAGC 1 cut(s) 1539
BlsI GCNGC 7 cut(s) 46, 187, 532, 1033, 1054, 1090, 1412
Bme1390I CCNGG 3 cut(s) 69, 162, 560
Bme18I GGWCC 2 cut(s) 556, 1511
BmgBI CACGTC 1 cut(s) 1073
BmgT120I GGNCC 2 cut(s) 556, 1511
BmiI GGNNCC 4 cut(s) 557, 1313, 1512, 1513
BmrFI CCNGG 3 cut(s) 69, 162, 560
BmrI ACTGGG 4 cut(s) 529, 557, 980, 1299
BmsI GCATC 7 cut(s) 430, 617, 928, 1147, 1205, 1351, 1486
BmuI ACTGGG 4 cut(s) 529, 557, 980, 1299
BoxI GACNNNNGTC 1 cut(s) 844
BpiI GAAGAC 2 cut(s) 65, 844
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 3 cut(s) 341, 450, 580
Bpu10I CCTNAGC 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 1539
BpuEI CTTGAG 2 cut(s) 706, 918
BpuMI CCSGG 1 cut(s) 560
BsaJI CCNNGG 5 cut(s) 67, 717, 849, 1102, 1307
BsaXI ACNNNNNCTCC 2 cut(s) 689, 719
Bsc4I CCNNNNNNNGG 3 cut(s) 565, 909, 1062
Bse1I ACTGG 6 cut(s) 535, 552, 597, 975, 1089, 1294
Bse3DI GCAATG 2 cut(s) 418, 828
BseBI CCWGG 2 cut(s) 69, 162
BseDI CCNNGG 5 cut(s) 67, 717, 849, 1102, 1307
BseGI GGATG 2 cut(s) 445, 484
BseLI CCNNNNNNNGG 3 cut(s) 565, 909, 1062
BseMI GCAATG 2 cut(s) 418, 828
BseMII CTCAG 4 cut(s) 44, 649, 1186, 1553
BseNI ACTGG 6 cut(s) 535, 552, 597, 975, 1089, 1294
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 7 cut(s) 31, 172, 542, 1018, 1039, 1075, 1397
BseYI CCCAGC 2 cut(s) 490, 1472
BshFI GGCC 1 cut(s) 261
BshNI GGYRCC 1 cut(s) 1311
BsiHKAI GWGCWC 2 cut(s) 372, 1208
BsiSI CCGG 1 cut(s) 559
BslFI GGGAC 2 cut(s) 564, 1497
BslI CCNNNNNNNGG 3 cut(s) 565, 909, 1062
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 2 cut(s) 564, 1497
BsmI GAATGC 1 cut(s) 1287
BsnI GGCC 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 372, 1208
Bsp143I GATC 4 cut(s) 106, 812, 828, 1459
Bsp1720I GCTNAGC 1 cut(s) 1539
Bsp19I CCATGG 1 cut(s) 1307
BspACI CCGC 1 cut(s) 1271
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 4 cut(s) 43, 648, 1185, 1552
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 4 cut(s) 557, 1313, 1512, 1513
BspMAI CTGCAG 1 cut(s) 352
BspPI GGATC 2 cut(s) 114, 1454
BspT107I GGYRCC 1 cut(s) 1311
BsrDI GCAATG 2 cut(s) 418, 828
BsrI ACTGG 6 cut(s) 535, 552, 597, 975, 1089, 1294
BssECI CCNNGG 5 cut(s) 67, 717, 849, 1102, 1307
BssMI GATC 4 cut(s) 106, 812, 828, 1459
BssT1I CCWWGG 3 cut(s) 849, 1102, 1307
Bst2UI CCWGG 2 cut(s) 69, 162
Bst4CI ACNGT 3 cut(s) 307, 892, 1549
BstC8I GCNNGC 3 cut(s) 472, 1303, 1479
BstDEI CTNAG 9 cut(s) 30, 93, 635, 770, 878, 917, 1172, 1200, 1539
BstDSI CCRYGG 1 cut(s) 1307
BstENI CCTNNNNNAGG 1 cut(s) 1060
BstF5I GGATG 2 cut(s) 445, 484
BstHHI GCGC 1 cut(s) 1003
BstKTI GATC 4 cut(s) 109, 815, 831, 1462
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 4 cut(s) 106, 812, 828, 1459
BstMWI GCNNNNNNNGC 7 cut(s) 347, 530, 965, 1097, 1176, 1311, 1478
BstNI CCWGG 2 cut(s) 69, 162
BstNSI RCATGY 4 cut(s) 300, 865, 1043, 1100
BstPAI GACNNNNGTC 1 cut(s) 844
BstSCI CCNGG 3 cut(s) 67, 160, 558
BstSFI CTRYAG 3 cut(s) 348, 891, 1545
BstV1I GCAGC 7 cut(s) 31, 172, 542, 1018, 1039, 1075, 1397
BstV2I GAAGAC 2 cut(s) 65, 844
BstXI CCANNNNNNTGG 1 cut(s) 604
BsuI GTATCC 1 cut(s) 906
BsuRI GGCC 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 1307
BtrI CACGTC 1 cut(s) 1073
BtsCI GGATG 2 cut(s) 445, 484
BtsI GCAGTG 1 cut(s) 1462
BtsIMutI CAGTG 6 cut(s) 542, 545, 838, 968, 1462, 1554
Cac8I GCNNGC 3 cut(s) 472, 1303, 1479
CciI TCATGA 1 cut(s) 277
CfoI GCGC 1 cut(s) 1003
Cfr13I GGNCC 2 cut(s) 556, 1511
CseI GACGC 2 cut(s) 92, 1185
CsiI ACCWGGT 1 cut(s) 160
Csp6I GTAC 3 cut(s) 158, 174, 353
CviQI GTAC 3 cut(s) 158, 174, 353
DdeI CTNAG 9 cut(s) 30, 93, 635, 770, 878, 917, 1172, 1200, 1539
DpnI GATC 4 cut(s) 108, 814, 830, 1461
DpnII GATC 4 cut(s) 106, 812, 828, 1459
DraIII CACNNNGTG 1 cut(s) 974
DrdI GACNNNNNNGTC 1 cut(s) 271
DseDI GACNNNNNNGTC 1 cut(s) 271
Ecl136II GAGCTC 1 cut(s) 1206
Eco130I CCWWGG 3 cut(s) 849, 1102, 1307
Eco24I GRGCYC 1 cut(s) 1208
Eco47I GGWCC 2 cut(s) 556, 1511
Eco53kI GAGCTC 1 cut(s) 1206
Eco57I CTGAAG 3 cut(s) 33, 59, 72
EcoICRI GAGCTC 1 cut(s) 1206
EcoNI CCTNNNNNAGG 1 cut(s) 1060
EcoO109I RGGNCCY 1 cut(s) 1511
EcoRII CCWGG 2 cut(s) 67, 160
EcoT14I CCWWGG 3 cut(s) 849, 1102, 1307
EcoT38I GRGCYC 1 cut(s) 1208
ErhI CCWWGG 3 cut(s) 849, 1102, 1307
FaqI GGGAC 2 cut(s) 564, 1497
FauI CCCGC 1 cut(s) 1264
FbaI TGATCA 1 cut(s) 828
Fnu4HI GCNGC 7 cut(s) 45, 186, 531, 1032, 1053, 1089, 1411
FokI GGATG 2 cut(s) 452, 491
FriOI GRGCYC 1 cut(s) 1208
Fsp4HI GCNGC 7 cut(s) 45, 186, 531, 1032, 1053, 1089, 1411
FspBI CTAG 4 cut(s) 167, 459, 1152, 1570
GlaI GCGC 1 cut(s) 1002
GluI GCNGC 7 cut(s) 45, 186, 531, 1032, 1053, 1089, 1411
GsaI CCCAGC 2 cut(s) 494, 1476
GsuI CTGGAG 3 cut(s) 341, 450, 580
HaeIII GGCC 1 cut(s) 261
HapII CCGG 1 cut(s) 559
HgaI GACGC 2 cut(s) 92, 1185
HhaI GCGC 1 cut(s) 1003
Hin6I GCGC 1 cut(s) 1001
HinP1I GCGC 1 cut(s) 1001
HincII GTYRAC 2 cut(s) 747, 1215
HindII GTYRAC 2 cut(s) 747, 1215
HinfI GANTC 5 cut(s) 272, 800, 953, 1253, 1566
HpaII CCGG 1 cut(s) 559
HphI GGTGA 3 cut(s) 986, 1014, 1564
Hpy166II GTNNAC 4 cut(s) 19, 747, 1079, 1215
Hpy188I TCNGA 8 cut(s) 52, 78, 638, 718, 928, 1132, 1175, 1258
Hpy188III TCNNGA 9 cut(s) 104, 167, 205, 278, 320, 816, 935, 962, 1423
Hpy8I GTNNAC 4 cut(s) 19, 747, 1079, 1215
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 5 cut(s) 128, 326, 329, 767, 1420
HpyCH4III ACNGT 3 cut(s) 307, 892, 1549
HpyCH4IV ACGT 2 cut(s) 355, 1072
HpyF10VI GCNNNNNNNGC 7 cut(s) 347, 530, 965, 1097, 1176, 1311, 1478
HpyF3I CTNAG 9 cut(s) 30, 93, 635, 770, 878, 917, 1172, 1200, 1539
HpySE526I ACGT 2 cut(s) 355, 1072
HspAI GCGC 1 cut(s) 1001
KflI GGGWCCC 1 cut(s) 1511
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 4 cut(s) 106, 812, 828, 1459
LmnI GCTCC 1 cut(s) 521
Lsp1109I GCAGC 7 cut(s) 31, 172, 542, 1018, 1039, 1075, 1397
LweI GCATC 7 cut(s) 430, 617, 928, 1147, 1205, 1351, 1486
MabI ACCWGGT 1 cut(s) 160
MaeI CTAG 4 cut(s) 167, 459, 1152, 1570
MaeII ACGT 2 cut(s) 355, 1072
MaeIII GTNAC 3 cut(s) 307, 1354, 1552
MalI GATC 4 cut(s) 108, 814, 830, 1461
MboI GATC 4 cut(s) 106, 812, 828, 1459
MboII GAAGA 3 cut(s) 65, 463, 849
MhlI GDGCHC 2 cut(s) 372, 1208
MlyI GAGTC 1 cut(s) 281
MnlI CCTC 8 cut(s) 393, 410, 640, 712, 1156, 1181, 1244, 1325
MroXI GAANNNNTTC 1 cut(s) 584
MseI TTAA 4 cut(s) 132, 405, 809, 1181
MspA1I CMGCKG 1 cut(s) 1031
MspI CCGG 1 cut(s) 559
MspR9I CCNGG 3 cut(s) 69, 162, 560
Mva1269I GAATGC 1 cut(s) 1287
MvaI CCWGG 2 cut(s) 69, 162
MwoI GCNNNNNNNGC 7 cut(s) 347, 530, 965, 1097, 1176, 1311, 1478
NciI CCSGG 1 cut(s) 560
NcoI CCATGG 1 cut(s) 1307
NdeII GATC 4 cut(s) 106, 812, 828, 1459
NlaIV GGNNCC 4 cut(s) 557, 1313, 1512, 1513
NmuCI GTSAC 2 cut(s) 1354, 1552
NspI RCATGY 4 cut(s) 300, 865, 1043, 1100
PagI TCATGA 1 cut(s) 277
PciI ACATGT 2 cut(s) 861, 1039
PctI GAATGC 1 cut(s) 1287
PdmI GAANNNNTTC 1 cut(s) 584
PfeI GAWTC 4 cut(s) 800, 953, 1253, 1566
PkrI GCNGC 7 cut(s) 46, 187, 532, 1033, 1054, 1090, 1412
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PpuMI RGGWCCY 1 cut(s) 1511
PscI ACATGT 2 cut(s) 861, 1039
PshAI GACNNNNGTC 1 cut(s) 844
PshBI ATTAAT 1 cut(s) 405
Psp124BI GAGCTC 1 cut(s) 1208
Psp5II RGGWCCY 1 cut(s) 1511
Psp6I CCWGG 2 cut(s) 67, 160
PspFI CCCAGC 2 cut(s) 490, 1472
PspGI CCWGG 2 cut(s) 67, 160
PspN4I GGNNCC 4 cut(s) 557, 1313, 1512, 1513
PspPI GGNCC 2 cut(s) 556, 1511
PspPPI RGGWCCY 1 cut(s) 1511
PstI CTGCAG 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 1031
RsaI GTAC 3 cut(s) 159, 175, 354
RsaNI GTAC 3 cut(s) 158, 174, 353
SacI GAGCTC 1 cut(s) 1208
SaqAI TTAA 4 cut(s) 132, 405, 809, 1181
SatI GCNGC 7 cut(s) 45, 186, 531, 1032, 1053, 1089, 1411
Sau3AI GATC 4 cut(s) 106, 812, 828, 1459
Sau96I GGNCC 2 cut(s) 556, 1511
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 3 cut(s) 69, 162, 560
SduI GDGCHC 2 cut(s) 372, 1208
SexAI ACCWGGT 1 cut(s) 160
SfaNI GCATC 7 cut(s) 430, 617, 928, 1147, 1205, 1351, 1486
SfcI CTRYAG 3 cut(s) 348, 891, 1545
SinI GGWCC 2 cut(s) 556, 1511
SmlI CTYRAG 2 cut(s) 685, 933
SmoI CTYRAG 2 cut(s) 685, 933
SpeI ACTAGT 1 cut(s) 1151
SsiI CCGC 1 cut(s) 1271
SspMI CTAG 4 cut(s) 167, 459, 1152, 1570
SstI GAGCTC 1 cut(s) 1208
StyD4I CCNGG 3 cut(s) 67, 160, 558
StyI CCWWGG 3 cut(s) 849, 1102, 1307
TaaI ACNGT 3 cut(s) 307, 892, 1549
TaiI ACGT 2 cut(s) 358, 1075
TaqI TCGA 2 cut(s) 723, 1331
TaqII GACCGA 2 cut(s) 1116, 1373
TatI WGTACW 1 cut(s) 173
TfiI GAWTC 4 cut(s) 800, 953, 1253, 1566
Tru1I TTAA 4 cut(s) 132, 405, 809, 1181
Tru9I TTAA 4 cut(s) 132, 405, 809, 1181
TscAI CASTG 6 cut(s) 542, 552, 838, 975, 1462, 1554
TseFI GTSAC 2 cut(s) 1354, 1552
TseI GCWGC 7 cut(s) 44, 185, 530, 1031, 1052, 1088, 1410
Tsp45I GTSAC 2 cut(s) 1354, 1552
TspDTI ATGAA 9 cut(s) 238, 294, 348, 429, 519, 531, 888, 912, 1203
TspGWI ACGGA 1 cut(s) 452
TspRI CASTG 6 cut(s) 542, 552, 838, 975, 1462, 1554
VpaK11BI GGWCC 2 cut(s) 556, 1511
VspI ATTAAT 1 cut(s) 405
XagI CCTNNNNNAGG 1 cut(s) 1060
XapI RAATTY 2 cut(s) 325, 1323
XbaI TCTAGA 1 cut(s) 166
XceI RCATGY 4 cut(s) 300, 865, 1043, 1100
XcmI CCANNNNNNNNNTGG 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 584
XspI CTAG 4 cut(s) 167, 459, 1152, 1570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.