26S proteasome non-ATPase regulatory subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G15180 AT3G15180 |
| fragaria_vesca | FvH4_3g19420 FvH4_3g19420 |
| malus_domestica | MD03G1232700.v1.1 MD11G1253400.v1.1 MD11G1279000.v1.1 |
| prunus_persica | Prupe.4G175900_v2.0.a1 |
| pyrus_communis | pycom03g17950 |
| rosa_chinensis | RchiOBHm_Chr5g0032701 |
| rosa_laevigata | RLG00000033417 RLG00000033419 |
| rosa_multiflora | Rmu_sc0002292.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00047400 Rroxscaffold_1G00047860 |
| rosa_rugosa | Rorug05G0133100 Rorug05G0133200 |
| rosa_samantha | Rh5AG225600 Rh5BG226800 Rh5CG254300 Rh5DG231400 |
| rosa_wichuraiana | Rw5G020680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 271 |
| AccB1I | GGYRCC | 1 cut(s) | 1311 |
| AciI | CCGC | 1 cut(s) | 1271 |
| AclWI | GGATC | 2 cut(s) | 114, 1454 |
| AcsI | RAATTY | 2 cut(s) | 325, 1323 |
| AcuI | CTGAAG | 3 cut(s) | 33, 59, 72 |
| AdeI | CACNNNGTG | 1 cut(s) | 974 |
| AfaI | GTAC | 3 cut(s) | 159, 175, 354 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 565, 909, 1062 |
| AflIII | ACRYGT | 2 cut(s) | 861, 1039 |
| AgsI | TTSAA | 6 cut(s) | 331, 435, 965, 995, 1017, 1535 |
| AhlI | ACTAGT | 1 cut(s) | 1151 |
| AjiI | CACGTC | 1 cut(s) | 1073 |
| AjnI | CCWGG | 2 cut(s) | 67, 160 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 904, 936 |
| Alw21I | GWGCWC | 2 cut(s) | 372, 1208 |
| Alw26I | GTCTC | 1 cut(s) | 279 |
| AlwI | GGATC | 2 cut(s) | 114, 1454 |
| AoxI | GGCC | 1 cut(s) | 259 |
| ApeKI | GCWGC | 7 cut(s) | 44, 185, 530, 1031, 1052, 1088, 1410 |
| ApoI | RAATTY | 2 cut(s) | 325, 1323 |
| AseI | ATTAAT | 1 cut(s) | 405 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 584 |
| AspLEI | GCGC | 1 cut(s) | 1003 |
| AspS9I | GGNCC | 2 cut(s) | 556, 1511 |
| AsuC2I | CCSGG | 1 cut(s) | 560 |
| AsuHPI | GGTGA | 3 cut(s) | 986, 1014, 1564 |
| AvaII | GGWCC | 2 cut(s) | 556, 1511 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 879, 912 |
| BanI | GGYRCC | 1 cut(s) | 1311 |
| BanII | GRGCYC | 1 cut(s) | 1208 |
| BbsI | GAAGAC | 2 cut(s) | 65, 844 |
| Bbv12I | GWGCWC | 2 cut(s) | 372, 1208 |
| BbvI | GCAGC | 7 cut(s) | 31, 172, 542, 1018, 1039, 1075, 1397 |
| BccI | CCATC | 3 cut(s) | 448, 522, 1228 |
| BceAI | ACGGC | 1 cut(s) | 1544 |
| BciT130I | CCWGG | 2 cut(s) | 69, 162 |
| BciVI | GTATCC | 1 cut(s) | 906 |
| BclI | TGATCA | 1 cut(s) | 828 |
| BcnI | CCSGG | 1 cut(s) | 560 |
| BcoDI | GTCTC | 1 cut(s) | 279 |
| BcuI | ACTAGT | 1 cut(s) | 1151 |
| BfaI | CTAG | 4 cut(s) | 167, 459, 1152, 1570 |
| BfmI | CTRYAG | 3 cut(s) | 348, 891, 1545 |
| BfuI | GTATCC | 1 cut(s) | 906 |
| BisI | GCNGC | 7 cut(s) | 45, 186, 531, 1032, 1053, 1089, 1411 |
| BlpI | GCTNAGC | 1 cut(s) | 1539 |
| BlsI | GCNGC | 7 cut(s) | 46, 187, 532, 1033, 1054, 1090, 1412 |
| Bme1390I | CCNGG | 3 cut(s) | 69, 162, 560 |
| Bme18I | GGWCC | 2 cut(s) | 556, 1511 |
| BmgBI | CACGTC | 1 cut(s) | 1073 |
| BmgT120I | GGNCC | 2 cut(s) | 556, 1511 |
| BmiI | GGNNCC | 4 cut(s) | 557, 1313, 1512, 1513 |
| BmrFI | CCNGG | 3 cut(s) | 69, 162, 560 |
| BmrI | ACTGGG | 4 cut(s) | 529, 557, 980, 1299 |
| BmsI | GCATC | 7 cut(s) | 430, 617, 928, 1147, 1205, 1351, 1486 |
| BmuI | ACTGGG | 4 cut(s) | 529, 557, 980, 1299 |
| BoxI | GACNNNNGTC | 1 cut(s) | 844 |
| BpiI | GAAGAC | 2 cut(s) | 65, 844 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 28 |
| BpmI | CTGGAG | 3 cut(s) | 341, 450, 580 |
| Bpu10I | CCTNAGC | 1 cut(s) | 93 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1539 |
| BpuEI | CTTGAG | 2 cut(s) | 706, 918 |
| BpuMI | CCSGG | 1 cut(s) | 560 |
| BsaJI | CCNNGG | 5 cut(s) | 67, 717, 849, 1102, 1307 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 689, 719 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 565, 909, 1062 |
| Bse1I | ACTGG | 6 cut(s) | 535, 552, 597, 975, 1089, 1294 |
| Bse3DI | GCAATG | 2 cut(s) | 418, 828 |
| BseBI | CCWGG | 2 cut(s) | 69, 162 |
| BseDI | CCNNGG | 5 cut(s) | 67, 717, 849, 1102, 1307 |
| BseGI | GGATG | 2 cut(s) | 445, 484 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 565, 909, 1062 |
| BseMI | GCAATG | 2 cut(s) | 418, 828 |
| BseMII | CTCAG | 4 cut(s) | 44, 649, 1186, 1553 |
| BseNI | ACTGG | 6 cut(s) | 535, 552, 597, 975, 1089, 1294 |
| BseRI | GAGGAG | 1 cut(s) | 20 |
| BseXI | GCAGC | 7 cut(s) | 31, 172, 542, 1018, 1039, 1075, 1397 |
| BseYI | CCCAGC | 2 cut(s) | 490, 1472 |
| BshFI | GGCC | 1 cut(s) | 261 |
| BshNI | GGYRCC | 1 cut(s) | 1311 |
| BsiHKAI | GWGCWC | 2 cut(s) | 372, 1208 |
| BsiSI | CCGG | 1 cut(s) | 559 |
| BslFI | GGGAC | 2 cut(s) | 564, 1497 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 565, 909, 1062 |
| BsmAI | GTCTC | 1 cut(s) | 279 |
| BsmFI | GGGAC | 2 cut(s) | 564, 1497 |
| BsmI | GAATGC | 1 cut(s) | 1287 |
| BsnI | GGCC | 1 cut(s) | 261 |
| Bsp1286I | GDGCHC | 2 cut(s) | 372, 1208 |
| Bsp143I | GATC | 4 cut(s) | 106, 812, 828, 1459 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1539 |
| Bsp19I | CCATGG | 1 cut(s) | 1307 |
| BspACI | CCGC | 1 cut(s) | 1271 |
| BspANI | GGCC | 1 cut(s) | 261 |
| BspCNI | CTCAG | 4 cut(s) | 43, 648, 1185, 1552 |
| BspHI | TCATGA | 1 cut(s) | 277 |
| BspLI | GGNNCC | 4 cut(s) | 557, 1313, 1512, 1513 |
| BspMAI | CTGCAG | 1 cut(s) | 352 |
| BspPI | GGATC | 2 cut(s) | 114, 1454 |
| BspT107I | GGYRCC | 1 cut(s) | 1311 |
| BsrDI | GCAATG | 2 cut(s) | 418, 828 |
| BsrI | ACTGG | 6 cut(s) | 535, 552, 597, 975, 1089, 1294 |
| BssECI | CCNNGG | 5 cut(s) | 67, 717, 849, 1102, 1307 |
| BssMI | GATC | 4 cut(s) | 106, 812, 828, 1459 |
| BssT1I | CCWWGG | 3 cut(s) | 849, 1102, 1307 |
| Bst2UI | CCWGG | 2 cut(s) | 69, 162 |
| Bst4CI | ACNGT | 3 cut(s) | 307, 892, 1549 |
| BstC8I | GCNNGC | 3 cut(s) | 472, 1303, 1479 |
| BstDEI | CTNAG | 9 cut(s) | 30, 93, 635, 770, 878, 917, 1172, 1200, 1539 |
| BstDSI | CCRYGG | 1 cut(s) | 1307 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1060 |
| BstF5I | GGATG | 2 cut(s) | 445, 484 |
| BstHHI | GCGC | 1 cut(s) | 1003 |
| BstKTI | GATC | 4 cut(s) | 109, 815, 831, 1462 |
| BstMAI | GTCTC | 1 cut(s) | 279 |
| BstMBI | GATC | 4 cut(s) | 106, 812, 828, 1459 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 347, 530, 965, 1097, 1176, 1311, 1478 |
| BstNI | CCWGG | 2 cut(s) | 69, 162 |
| BstNSI | RCATGY | 4 cut(s) | 300, 865, 1043, 1100 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 844 |
| BstSCI | CCNGG | 3 cut(s) | 67, 160, 558 |
| BstSFI | CTRYAG | 3 cut(s) | 348, 891, 1545 |
| BstV1I | GCAGC | 7 cut(s) | 31, 172, 542, 1018, 1039, 1075, 1397 |
| BstV2I | GAAGAC | 2 cut(s) | 65, 844 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 604 |
| BsuI | GTATCC | 1 cut(s) | 906 |
| BsuRI | GGCC | 1 cut(s) | 261 |
| BtgI | CCRYGG | 1 cut(s) | 1307 |
| BtrI | CACGTC | 1 cut(s) | 1073 |
| BtsCI | GGATG | 2 cut(s) | 445, 484 |
| BtsI | GCAGTG | 1 cut(s) | 1462 |
| BtsIMutI | CAGTG | 6 cut(s) | 542, 545, 838, 968, 1462, 1554 |
| Cac8I | GCNNGC | 3 cut(s) | 472, 1303, 1479 |
| CciI | TCATGA | 1 cut(s) | 277 |
| CfoI | GCGC | 1 cut(s) | 1003 |
| Cfr13I | GGNCC | 2 cut(s) | 556, 1511 |
| CseI | GACGC | 2 cut(s) | 92, 1185 |
| CsiI | ACCWGGT | 1 cut(s) | 160 |
| Csp6I | GTAC | 3 cut(s) | 158, 174, 353 |
| CviQI | GTAC | 3 cut(s) | 158, 174, 353 |
| DdeI | CTNAG | 9 cut(s) | 30, 93, 635, 770, 878, 917, 1172, 1200, 1539 |
| DpnI | GATC | 4 cut(s) | 108, 814, 830, 1461 |
| DpnII | GATC | 4 cut(s) | 106, 812, 828, 1459 |
| DraIII | CACNNNGTG | 1 cut(s) | 974 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 271 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 271 |
| Ecl136II | GAGCTC | 1 cut(s) | 1206 |
| Eco130I | CCWWGG | 3 cut(s) | 849, 1102, 1307 |
| Eco24I | GRGCYC | 1 cut(s) | 1208 |
| Eco47I | GGWCC | 2 cut(s) | 556, 1511 |
| Eco53kI | GAGCTC | 1 cut(s) | 1206 |
| Eco57I | CTGAAG | 3 cut(s) | 33, 59, 72 |
| EcoICRI | GAGCTC | 1 cut(s) | 1206 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1060 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1511 |
| EcoRII | CCWGG | 2 cut(s) | 67, 160 |
| EcoT14I | CCWWGG | 3 cut(s) | 849, 1102, 1307 |
| EcoT38I | GRGCYC | 1 cut(s) | 1208 |
| ErhI | CCWWGG | 3 cut(s) | 849, 1102, 1307 |
| FaqI | GGGAC | 2 cut(s) | 564, 1497 |
| FauI | CCCGC | 1 cut(s) | 1264 |
| FbaI | TGATCA | 1 cut(s) | 828 |
| Fnu4HI | GCNGC | 7 cut(s) | 45, 186, 531, 1032, 1053, 1089, 1411 |
| FokI | GGATG | 2 cut(s) | 452, 491 |
| FriOI | GRGCYC | 1 cut(s) | 1208 |
| Fsp4HI | GCNGC | 7 cut(s) | 45, 186, 531, 1032, 1053, 1089, 1411 |
| FspBI | CTAG | 4 cut(s) | 167, 459, 1152, 1570 |
| GlaI | GCGC | 1 cut(s) | 1002 |
| GluI | GCNGC | 7 cut(s) | 45, 186, 531, 1032, 1053, 1089, 1411 |
| GsaI | CCCAGC | 2 cut(s) | 494, 1476 |
| GsuI | CTGGAG | 3 cut(s) | 341, 450, 580 |
| HaeIII | GGCC | 1 cut(s) | 261 |
| HapII | CCGG | 1 cut(s) | 559 |
| HgaI | GACGC | 2 cut(s) | 92, 1185 |
| HhaI | GCGC | 1 cut(s) | 1003 |
| Hin6I | GCGC | 1 cut(s) | 1001 |
| HinP1I | GCGC | 1 cut(s) | 1001 |
| HincII | GTYRAC | 2 cut(s) | 747, 1215 |
| HindII | GTYRAC | 2 cut(s) | 747, 1215 |
| HinfI | GANTC | 5 cut(s) | 272, 800, 953, 1253, 1566 |
| HpaII | CCGG | 1 cut(s) | 559 |
| HphI | GGTGA | 3 cut(s) | 986, 1014, 1564 |
| Hpy166II | GTNNAC | 4 cut(s) | 19, 747, 1079, 1215 |
| Hpy188I | TCNGA | 8 cut(s) | 52, 78, 638, 718, 928, 1132, 1175, 1258 |
| Hpy188III | TCNNGA | 9 cut(s) | 104, 167, 205, 278, 320, 816, 935, 962, 1423 |
| Hpy8I | GTNNAC | 4 cut(s) | 19, 747, 1079, 1215 |
| Hpy99I | CGWCG | 1 cut(s) | 86 |
| HpyAV | CCTTC | 5 cut(s) | 128, 326, 329, 767, 1420 |
| HpyCH4III | ACNGT | 3 cut(s) | 307, 892, 1549 |
| HpyCH4IV | ACGT | 2 cut(s) | 355, 1072 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 347, 530, 965, 1097, 1176, 1311, 1478 |
| HpyF3I | CTNAG | 9 cut(s) | 30, 93, 635, 770, 878, 917, 1172, 1200, 1539 |
| HpySE526I | ACGT | 2 cut(s) | 355, 1072 |
| HspAI | GCGC | 1 cut(s) | 1001 |
| KflI | GGGWCCC | 1 cut(s) | 1511 |
| Ksp22I | TGATCA | 1 cut(s) | 828 |
| Kzo9I | GATC | 4 cut(s) | 106, 812, 828, 1459 |
| LmnI | GCTCC | 1 cut(s) | 521 |
| Lsp1109I | GCAGC | 7 cut(s) | 31, 172, 542, 1018, 1039, 1075, 1397 |
| LweI | GCATC | 7 cut(s) | 430, 617, 928, 1147, 1205, 1351, 1486 |
| MabI | ACCWGGT | 1 cut(s) | 160 |
| MaeI | CTAG | 4 cut(s) | 167, 459, 1152, 1570 |
| MaeII | ACGT | 2 cut(s) | 355, 1072 |
| MaeIII | GTNAC | 3 cut(s) | 307, 1354, 1552 |
| MalI | GATC | 4 cut(s) | 108, 814, 830, 1461 |
| MboI | GATC | 4 cut(s) | 106, 812, 828, 1459 |
| MboII | GAAGA | 3 cut(s) | 65, 463, 849 |
| MhlI | GDGCHC | 2 cut(s) | 372, 1208 |
| MlyI | GAGTC | 1 cut(s) | 281 |
| MnlI | CCTC | 8 cut(s) | 393, 410, 640, 712, 1156, 1181, 1244, 1325 |
| MroXI | GAANNNNTTC | 1 cut(s) | 584 |
| MseI | TTAA | 4 cut(s) | 132, 405, 809, 1181 |
| MspA1I | CMGCKG | 1 cut(s) | 1031 |
| MspI | CCGG | 1 cut(s) | 559 |
| MspR9I | CCNGG | 3 cut(s) | 69, 162, 560 |
| Mva1269I | GAATGC | 1 cut(s) | 1287 |
| MvaI | CCWGG | 2 cut(s) | 69, 162 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 347, 530, 965, 1097, 1176, 1311, 1478 |
| NciI | CCSGG | 1 cut(s) | 560 |
| NcoI | CCATGG | 1 cut(s) | 1307 |
| NdeII | GATC | 4 cut(s) | 106, 812, 828, 1459 |
| NlaIV | GGNNCC | 4 cut(s) | 557, 1313, 1512, 1513 |
| NmuCI | GTSAC | 2 cut(s) | 1354, 1552 |
| NspI | RCATGY | 4 cut(s) | 300, 865, 1043, 1100 |
| PagI | TCATGA | 1 cut(s) | 277 |
| PciI | ACATGT | 2 cut(s) | 861, 1039 |
| PctI | GAATGC | 1 cut(s) | 1287 |
| PdmI | GAANNNNTTC | 1 cut(s) | 584 |
| PfeI | GAWTC | 4 cut(s) | 800, 953, 1253, 1566 |
| PkrI | GCNGC | 7 cut(s) | 46, 187, 532, 1033, 1054, 1090, 1412 |
| PleI | GAGTC | 1 cut(s) | 280 |
| PpsI | GAGTC | 1 cut(s) | 280 |
| PpuMI | RGGWCCY | 1 cut(s) | 1511 |
| PscI | ACATGT | 2 cut(s) | 861, 1039 |
| PshAI | GACNNNNGTC | 1 cut(s) | 844 |
| PshBI | ATTAAT | 1 cut(s) | 405 |
| Psp124BI | GAGCTC | 1 cut(s) | 1208 |
| Psp5II | RGGWCCY | 1 cut(s) | 1511 |
| Psp6I | CCWGG | 2 cut(s) | 67, 160 |
| PspFI | CCCAGC | 2 cut(s) | 490, 1472 |
| PspGI | CCWGG | 2 cut(s) | 67, 160 |
| PspN4I | GGNNCC | 4 cut(s) | 557, 1313, 1512, 1513 |
| PspPI | GGNCC | 2 cut(s) | 556, 1511 |
| PspPPI | RGGWCCY | 1 cut(s) | 1511 |
| PstI | CTGCAG | 1 cut(s) | 352 |
| PvuII | CAGCTG | 1 cut(s) | 1031 |
| RsaI | GTAC | 3 cut(s) | 159, 175, 354 |
| RsaNI | GTAC | 3 cut(s) | 158, 174, 353 |
| SacI | GAGCTC | 1 cut(s) | 1208 |
| SaqAI | TTAA | 4 cut(s) | 132, 405, 809, 1181 |
| SatI | GCNGC | 7 cut(s) | 45, 186, 531, 1032, 1053, 1089, 1411 |
| Sau3AI | GATC | 4 cut(s) | 106, 812, 828, 1459 |
| Sau96I | GGNCC | 2 cut(s) | 556, 1511 |
| SchI | GAGTC | 1 cut(s) | 281 |
| ScrFI | CCNGG | 3 cut(s) | 69, 162, 560 |
| SduI | GDGCHC | 2 cut(s) | 372, 1208 |
| SexAI | ACCWGGT | 1 cut(s) | 160 |
| SfaNI | GCATC | 7 cut(s) | 430, 617, 928, 1147, 1205, 1351, 1486 |
| SfcI | CTRYAG | 3 cut(s) | 348, 891, 1545 |
| SinI | GGWCC | 2 cut(s) | 556, 1511 |
| SmlI | CTYRAG | 2 cut(s) | 685, 933 |
| SmoI | CTYRAG | 2 cut(s) | 685, 933 |
| SpeI | ACTAGT | 1 cut(s) | 1151 |
| SsiI | CCGC | 1 cut(s) | 1271 |
| SspMI | CTAG | 4 cut(s) | 167, 459, 1152, 1570 |
| SstI | GAGCTC | 1 cut(s) | 1208 |
| StyD4I | CCNGG | 3 cut(s) | 67, 160, 558 |
| StyI | CCWWGG | 3 cut(s) | 849, 1102, 1307 |
| TaaI | ACNGT | 3 cut(s) | 307, 892, 1549 |
| TaiI | ACGT | 2 cut(s) | 358, 1075 |
| TaqI | TCGA | 2 cut(s) | 723, 1331 |
| TaqII | GACCGA | 2 cut(s) | 1116, 1373 |
| TatI | WGTACW | 1 cut(s) | 173 |
| TfiI | GAWTC | 4 cut(s) | 800, 953, 1253, 1566 |
| Tru1I | TTAA | 4 cut(s) | 132, 405, 809, 1181 |
| Tru9I | TTAA | 4 cut(s) | 132, 405, 809, 1181 |
| TscAI | CASTG | 6 cut(s) | 542, 552, 838, 975, 1462, 1554 |
| TseFI | GTSAC | 2 cut(s) | 1354, 1552 |
| TseI | GCWGC | 7 cut(s) | 44, 185, 530, 1031, 1052, 1088, 1410 |
| Tsp45I | GTSAC | 2 cut(s) | 1354, 1552 |
| TspDTI | ATGAA | 9 cut(s) | 238, 294, 348, 429, 519, 531, 888, 912, 1203 |
| TspGWI | ACGGA | 1 cut(s) | 452 |
| TspRI | CASTG | 6 cut(s) | 542, 552, 838, 975, 1462, 1554 |
| VpaK11BI | GGWCC | 2 cut(s) | 556, 1511 |
| VspI | ATTAAT | 1 cut(s) | 405 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1060 |
| XapI | RAATTY | 2 cut(s) | 325, 1323 |
| XbaI | TCTAGA | 1 cut(s) | 166 |
| XceI | RCATGY | 4 cut(s) | 300, 865, 1043, 1100 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 212 |
| XmnI | GAANNNNTTC | 1 cut(s) | 584 |
| XspI | CTAG | 4 cut(s) | 167, 459, 1152, 1570 |