pycom03g17950

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
19023488 .. 19031661
8174 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g17950.6

Sequence Viewer

Length: 1575 bp
ATGGAGGAATACTCGGTAGACGACCCAACTCAGCTACTCGAAGCTGCTTCCGATTTCGCGAACTACGCCGGTTTTCAAAACGACGATTCAGCTAAGGAATTCCTCAATCGCTTCCCACTTCCCGTCATTCTCAATGCTCTGCAAACGAAAACCGATGTGCCGGGTCTGGAAAGCACACTGGTTGCTGTTTTGGAAAGGGTGTTCAAGACAAAATATGGCGCTTCTCTCATCCCCCAGTTCATGCCATTTGTACAAGTTGGTCTGACGGCAGAGTCTCAGGAAGTCAAATCTTTAGCTTGTACAACGGTTTCTTGCCTTCTCGAGAATTTGAATGAAGGTTCTGTTTCTGCAACACGCCTTATACTTGACCACGATATATATCCTCTTTTGCTTGATTGCCTCATTCATGGCAATGAAAAAGTTGCAACTCTAGCAATGGATGCAATAGAGAAGATAGCTGGTTCTCCCAAGGGCATAGATATTGTTTTCCCAGCTAATACTAAAGAAGCTACACATCTTGGGGCTCTAGCAGCCCAATGCTCGTCAGTGGGACGGGTCCGGGTTCTGGCTTTGATAGTGAAGCTAGTCTCTGTGTCCGCCGATGTAGCATCAGTAGTTCAAAAGTCAAATCTACTTGGACTTTTTGAGGCAGAAATCAACAACACAACTGATACCCTTTCAACCTTGAGCATTTTGGAACTTTTGTATGAGTTGTCAGAGATCGAGCATGGTAGAGAGTTTTTGTCTGCAAGCACCCTTCTGCAACTGCTTAGTTCTATAATCAGCAACAAATCAATGGAGTCGATTTTAAGAACAAGGGCAATGATGATTAGTGGAAGAATTCTGTCCAAGGAGAATTACATACTTGCTGATGAATTAAGTGTAAAAACCGTATTATCAGCCATAGACGGGATACTTAGTTCATCCGATACTCAAGAAATAGATGAATGTGAATCTGCTCTTGAAGCACTGGGTCAAATAGGGTCATCCATTCAAGGAGCGCAGTTTCTATTGTCAAGTTCACCACCAGCTGCAAGGCATGTCATCTATGCTGCCTTTGATAGGCACGGACGTGGTAAACAACTGGCTGCCTTACATGCCCTTGGAAACATCTCTGGAGAAACTCGGCCTGTGAACAGCATGATACTGACTAGTGATGCAGAAGAAAGCCTTCGACGCTTGATTTATGAAACAGCATCTAAGAGTTCAAAGTTGACACCATCTGGTCTTTTCCTATCAGTTCTCAAACAGGATTCGGAAATTCGTTTGGCGGGATATCGAATGCTGTCTGGGTTGGTGGCTCGCCCATGGTGCCTGATGGAGATTTGCTCAAAGCAAGAGATAATAAATATAGTAACTGATCCAGTTACTGAAACCACTAAACTAGGTATGGAAGCCAGATACAATTGCTGCAAGGCTATCCACACCGCTTTTAACATGTCAAGTAAACTTGCCAGCGACCAATCTCTTTCTGGAATTGCGGCAAAGTTGCACGAAGCTGTTAAAATGGGTCCGTACCTAGCTAGGAAGCACCTTGAGGCTCAACCCATGGTGGTGACGGAGGACAGATTCTAG

Protein Analysis

525

Amino Acids

56.82

Weight (kDa)

5.2

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 271
AccB1I GGYRCC 1 cut(s) 1311
AccI GTMKAC 1 cut(s) 18
AccII CGCG 1 cut(s) 59
AciI CCGC 4 cut(s) 597, 1271, 1428, 1481
AclWI GGATC 1 cut(s) 1355
AcsI RAATTY 4 cut(s) 98, 325, 840, 1260
AfaI GTAC 3 cut(s) 252, 301, 1517
AfiI CCNNNNNNNGG 3 cut(s) 565, 909, 1062
AflIII ACRYGT 1 cut(s) 1437
AgsI TTSAA 8 cut(s) 77, 205, 331, 620, 681, 965, 995, 1209
AhlI ACTAGT 1 cut(s) 1151
AjiI CACGTC 1 cut(s) 1073
AleI CACNNNNGTG 1 cut(s) 1071
AloI GAACNNNNNNTCC 4 cut(s) 185, 217, 904, 936
Alw26I GTCTC 2 cut(s) 279, 592
AlwI GGATC 1 cut(s) 1355
AlwNI CAGNNNCTG 1 cut(s) 1370
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 1 cut(s) 1127
ApeKI GCWGC 6 cut(s) 44, 530, 1031, 1052, 1088, 1410
ApoI RAATTY 4 cut(s) 98, 325, 840, 1260
Asp700I GAANNNNTTC 1 cut(s) 1170
AspLEI GCGC 2 cut(s) 221, 1003
AspS9I GGNCC 2 cut(s) 556, 1511
AsuC2I CCSGG 2 cut(s) 162, 560
AsuHPI GGTGA 2 cut(s) 1014, 1567
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 2 cut(s) 556, 1511
BanI GGYRCC 1 cut(s) 1311
BanII GRGCYC 1 cut(s) 526
BbvI GCAGC 6 cut(s) 31, 542, 1018, 1039, 1075, 1397
BccI CCATC 2 cut(s) 1228, 1312
BceAI ACGGC 1 cut(s) 282
BciVI GTATCC 1 cut(s) 906
BcnI CCSGG 2 cut(s) 162, 560
BcoDI GTCTC 2 cut(s) 279, 592
BcuI ACTAGT 1 cut(s) 1151
BfaI CTAG 8 cut(s) 431, 527, 584, 1152, 1385, 1520, 1524, 1573
BfoI RGCGCY 1 cut(s) 222
BfuI GTATCC 1 cut(s) 906
BisI GCNGC 7 cut(s) 45, 531, 1032, 1053, 1089, 1411, 1482
BlsI GCNGC 7 cut(s) 46, 532, 1033, 1054, 1090, 1412, 1483
Bme1390I CCNGG 2 cut(s) 162, 560
Bme18I GGWCC 2 cut(s) 556, 1511
BmeT110I CYCGRG 1 cut(s) 320
BmgBI CACGTC 1 cut(s) 1073
BmgT120I GGNCC 2 cut(s) 556, 1511
BmiI GGNNCC 3 cut(s) 557, 1313, 1512
BmrFI CCNGG 2 cut(s) 162, 560
BmrI ACTGGG 2 cut(s) 229, 980
BmsI GCATC 4 cut(s) 430, 617, 1147, 1205
BmuI ACTGGG 2 cut(s) 229, 980
BplI GAGNNNNNCTC 3 cut(s) 28, 1313, 1345
BpmI CTGGAG 1 cut(s) 1137
Bpu10I CCTNAGC 1 cut(s) 93
BpuEI CTTGAG 3 cut(s) 706, 918, 1556
BpuMI CCSGG 2 cut(s) 162, 560
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 5 cut(s) 468, 849, 1102, 1307, 1548
Bsc4I CCNNNNNNNGG 3 cut(s) 565, 909, 1062
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 5 cut(s) 183, 235, 975, 1089, 1364
Bse3DI GCAATG 3 cut(s) 418, 441, 828
Bse8I GATNNNNATC 1 cut(s) 378
BseDI CCNNGG 5 cut(s) 468, 849, 1102, 1307, 1548
BseGI GGATG 4 cut(s) 228, 445, 923, 986
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 3 cut(s) 565, 909, 1062
BseMI GCAATG 3 cut(s) 418, 441, 828
BseMII CTCAG 2 cut(s) 44, 290
BseNI ACTGG 5 cut(s) 183, 235, 975, 1089, 1364
BseXI GCAGC 6 cut(s) 31, 542, 1018, 1039, 1075, 1397
BseYI CCCAGC 1 cut(s) 490
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 1 cut(s) 1129
BshNI GGYRCC 1 cut(s) 1311
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 3 cut(s) 69, 161, 559
BslFI GGGAC 1 cut(s) 564
BslI CCNNNNNNNGG 3 cut(s) 565, 909, 1062
BsmAI GTCTC 2 cut(s) 279, 592
BsmFI GGGAC 1 cut(s) 564
BsmI GAATGC 1 cut(s) 1287
BsnI GGCC 1 cut(s) 1129
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 526
Bsp1407I TGTACA 2 cut(s) 250, 299
Bsp143I GATC 2 cut(s) 720, 1360
Bsp19I CCATGG 2 cut(s) 1307, 1548
Bsp68I TCGCGA 1 cut(s) 59
BspACI CCGC 4 cut(s) 597, 1271, 1428, 1481
BspANI GGCC 1 cut(s) 1129
BspCNI CTCAG 2 cut(s) 43, 289
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 3 cut(s) 557, 1313, 1512
BspPI GGATC 1 cut(s) 1355
BspT107I GGYRCC 1 cut(s) 1311
BsrDI GCAATG 3 cut(s) 418, 441, 828
BsrFI RCCGGY 1 cut(s) 68
BsrGI TGTACA 2 cut(s) 250, 299
BsrI ACTGG 5 cut(s) 183, 235, 975, 1089, 1364
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 5 cut(s) 468, 849, 1102, 1307, 1548
BssMI GATC 2 cut(s) 720, 1360
BssT1I CCWWGG 5 cut(s) 468, 849, 1102, 1307, 1548
Bst4CI ACNGT 2 cut(s) 307, 892
BstAPI GCANNNNNTGC 1 cut(s) 440
BstAUI TGTACA 2 cut(s) 250, 299
BstC8I GCNNGC 3 cut(s) 751, 1303, 1456
BstDEI CTNAG 6 cut(s) 30, 93, 276, 770, 917, 1200
BstDSI CCRYGG 2 cut(s) 1307, 1548
BstENI CCTNNNNNAGG 1 cut(s) 1060
BstF5I GGATG 4 cut(s) 228, 445, 923, 986
BstFNI CGCG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 2 cut(s) 221, 1003
BstKTI GATC 2 cut(s) 723, 1363
BstMAI GTCTC 2 cut(s) 279, 592
BstMBI GATC 2 cut(s) 720, 1360
BstMWI GCNNNNNNNGC 9 cut(s) 65, 431, 440, 530, 605, 965, 1097, 1176, 1311
BstNSI RCATGY 3 cut(s) 1043, 1100, 1441
BstSCI CCNGG 2 cut(s) 160, 558
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 6 cut(s) 31, 542, 1018, 1039, 1075, 1397
BsuI GTATCC 1 cut(s) 906
BsuRI GGCC 1 cut(s) 1129
BtgI CCRYGG 2 cut(s) 1307, 1548
BtrI CACGTC 1 cut(s) 1073
BtsCI GGATG 4 cut(s) 228, 445, 923, 986
BtsIMutI CAGTG 3 cut(s) 176, 552, 968
BtuMI TCGCGA 1 cut(s) 59
Cac8I GCNNGC 3 cut(s) 751, 1303, 1456
CaiI CAGNNNCTG 1 cut(s) 1370
CfoI GCGC 2 cut(s) 221, 1003
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 556, 1511
CseI GACGC 1 cut(s) 1185
Csp6I GTAC 3 cut(s) 251, 300, 1516
CviAII CATG 9 cut(s) 241, 407, 728, 1040, 1097, 1141, 1308, 1438, 1549
CviQI GTAC 3 cut(s) 251, 300, 1516
DdeI CTNAG 6 cut(s) 30, 93, 276, 770, 917, 1200
DpnI GATC 2 cut(s) 722, 1362
DpnII GATC 2 cut(s) 720, 1360
DrdI GACNNNNNNGTC 1 cut(s) 271
DseDI GACNNNNNNGTC 1 cut(s) 271
EciI GGCGGA 1 cut(s) 586
Eco130I CCWWGG 5 cut(s) 468, 849, 1102, 1307, 1548
Eco24I GRGCYC 1 cut(s) 526
Eco32I GATATC 1 cut(s) 1277
Eco47I GGWCC 2 cut(s) 556, 1511
Eco88I CYCGRG 1 cut(s) 320
EcoNI CCTNNNNNAGG 1 cut(s) 1060
EcoRI GAATTC 2 cut(s) 98, 840
EcoRV GATATC 1 cut(s) 1277
EcoT14I CCWWGG 5 cut(s) 468, 849, 1102, 1307, 1548
EcoT38I GRGCYC 1 cut(s) 526
ErhI CCWWGG 5 cut(s) 468, 849, 1102, 1307, 1548
FaeI CATG 9 cut(s) 244, 410, 731, 1043, 1100, 1144, 1311, 1441, 1552
FalI AAGNNNNNCTT 2 cut(s) 1155, 1187
FaqI GGGAC 1 cut(s) 564
FatI CATG 9 cut(s) 240, 406, 727, 1039, 1096, 1140, 1307, 1437, 1548
FauI CCCGC 1 cut(s) 1264
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 7 cut(s) 45, 531, 1032, 1053, 1089, 1411, 1482
FokI GGATG 4 cut(s) 215, 452, 910, 973
FriOI GRGCYC 1 cut(s) 526
Fsp4HI GCNGC 7 cut(s) 45, 531, 1032, 1053, 1089, 1411, 1482
FspBI CTAG 8 cut(s) 431, 527, 584, 1152, 1385, 1520, 1524, 1573
GlaI GCGC 2 cut(s) 220, 1002
GluI GCNGC 7 cut(s) 45, 531, 1032, 1053, 1089, 1411, 1482
GsaI CCCAGC 1 cut(s) 494
GsuI CTGGAG 1 cut(s) 1137
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 1 cut(s) 1129
HapII CCGG 3 cut(s) 69, 161, 559
HgaI GACGC 1 cut(s) 1185
HhaI GCGC 2 cut(s) 221, 1003
Hin1II CATG 9 cut(s) 244, 410, 731, 1043, 1100, 1144, 1311, 1441, 1552
Hin6I GCGC 2 cut(s) 219, 1001
HinP1I GCGC 2 cut(s) 219, 1001
HincII GTYRAC 1 cut(s) 1215
HindII GTYRAC 1 cut(s) 1215
HinfI GANTC 6 cut(s) 86, 272, 800, 953, 1253, 1569
HpaII CCGG 3 cut(s) 69, 161, 559
HphI GGTGA 2 cut(s) 1014, 1567
Hpy166II GTNNAC 6 cut(s) 19, 1022, 1079, 1135, 1215, 1448
Hpy188I TCNGA 5 cut(s) 52, 264, 718, 928, 1258
Hpy8I GTNNAC 6 cut(s) 19, 1022, 1079, 1135, 1215, 1448
Hpy99I CGWCG 2 cut(s) 86, 1179
HpyAV CCTTC 4 cut(s) 326, 329, 767, 1181
HpyCH4III ACNGT 2 cut(s) 307, 892
HpyCH4IV ACGT 1 cut(s) 1072
HpyF10VI GCNNNNNNNGC 9 cut(s) 65, 431, 440, 530, 605, 965, 1097, 1176, 1311
HpyF3I CTNAG 6 cut(s) 30, 93, 276, 770, 917, 1200
HpySE526I ACGT 1 cut(s) 1072
Hsp92II CATG 9 cut(s) 244, 410, 731, 1043, 1100, 1144, 1311, 1441, 1552
HspAI GCGC 2 cut(s) 219, 1001
Kzo9I GATC 2 cut(s) 720, 1360
LmnI GCTCC 1 cut(s) 998
Lsp1109I GCAGC 6 cut(s) 31, 542, 1018, 1039, 1075, 1397
LweI GCATC 4 cut(s) 430, 617, 1147, 1205
MaeI CTAG 8 cut(s) 431, 527, 584, 1152, 1385, 1520, 1524, 1573
MaeII ACGT 1 cut(s) 1072
MaeIII GTNAC 3 cut(s) 1354, 1366, 1555
MalI GATC 2 cut(s) 722, 1362
MboI GATC 2 cut(s) 720, 1360
MboII GAAGA 3 cut(s) 463, 849, 1175
MfeI CAATTG 1 cut(s) 1405
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 8 cut(s) 98, 325, 840, 856, 875, 1260, 1405, 1476
MlyI GAGTC 2 cut(s) 281, 809
MnlI CCTC 6 cut(s) 113, 393, 410, 640, 1531, 1555
MroXI GAANNNNTTC 1 cut(s) 1170
MseI TTAA 4 cut(s) 809, 878, 1434, 1503
MslI CAYNNNNRTG 3 cut(s) 411, 1071, 1553
MspA1I CMGCKG 1 cut(s) 1031
MspI CCGG 3 cut(s) 69, 161, 559
MspR9I CCNGG 2 cut(s) 162, 560
MunI CAATTG 1 cut(s) 1405
Mva1269I GAATGC 1 cut(s) 1287
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 9 cut(s) 65, 431, 440, 530, 605, 965, 1097, 1176, 1311
NciI CCSGG 2 cut(s) 162, 560
NcoI CCATGG 2 cut(s) 1307, 1548
NdeII GATC 2 cut(s) 720, 1360
NlaIII CATG 9 cut(s) 244, 410, 731, 1043, 1100, 1144, 1311, 1441, 1552
NlaIV GGNNCC 3 cut(s) 557, 1313, 1512
NmeAIII GCCGAG 1 cut(s) 1105
NmuCI GTSAC 1 cut(s) 1555
NruI TCGCGA 1 cut(s) 59
NspI RCATGY 3 cut(s) 1043, 1100, 1441
OliI CACNNNNGTG 1 cut(s) 1071
PaeR7I CTCGAG 1 cut(s) 320
PciI ACATGT 1 cut(s) 1437
PctI GAATGC 1 cut(s) 1287
PdmI GAANNNNTTC 1 cut(s) 1170
PfeI GAWTC 4 cut(s) 86, 953, 1253, 1569
PkrI GCNGC 7 cut(s) 46, 532, 1033, 1054, 1090, 1412, 1483
PleI GAGTC 2 cut(s) 280, 808
PpsI GAGTC 2 cut(s) 280, 808
PscI ACATGT 1 cut(s) 1437
PspFI CCCAGC 1 cut(s) 490
PspN4I GGNNCC 3 cut(s) 557, 1313, 1512
PspPI GGNCC 2 cut(s) 556, 1511
PstNI CAGNNNCTG 1 cut(s) 1370
PvuII CAGCTG 1 cut(s) 1031
RruI TCGCGA 1 cut(s) 59
RsaI GTAC 3 cut(s) 252, 301, 1517
RsaNI GTAC 3 cut(s) 251, 300, 1516
RseI CAYNNNNRTG 3 cut(s) 411, 1071, 1553
SaqAI TTAA 4 cut(s) 809, 878, 1434, 1503
SatI GCNGC 7 cut(s) 45, 531, 1032, 1053, 1089, 1411, 1482
Sau3AI GATC 2 cut(s) 720, 1360
Sau96I GGNCC 2 cut(s) 556, 1511
SchI GAGTC 2 cut(s) 281, 809
ScrFI CCNGG 2 cut(s) 162, 560
SduI GDGCHC 1 cut(s) 526
SfaNI GCATC 4 cut(s) 430, 617, 1147, 1205
Sfr274I CTCGAG 1 cut(s) 320
SinI GGWCC 2 cut(s) 556, 1511
SlaI CTCGAG 1 cut(s) 320
SmiMI CAYNNNNRTG 3 cut(s) 411, 1071, 1553
SmlI CTYRAG 4 cut(s) 320, 685, 933, 1535
SmoI CTYRAG 4 cut(s) 320, 685, 933, 1535
SpeI ACTAGT 1 cut(s) 1151
Sse9I AATT 8 cut(s) 98, 325, 840, 856, 875, 1260, 1405, 1476
SsiI CCGC 4 cut(s) 597, 1271, 1428, 1481
SspMI CTAG 8 cut(s) 431, 527, 584, 1152, 1385, 1520, 1524, 1573
StyD4I CCNGG 2 cut(s) 160, 558
StyI CCWWGG 5 cut(s) 468, 849, 1102, 1307, 1548
TaaI ACNGT 2 cut(s) 307, 892
TaiI ACGT 1 cut(s) 1075
TaqI TCGA 6 cut(s) 39, 321, 723, 803, 1174, 1279
TasI AATT 8 cut(s) 98, 325, 840, 856, 875, 1260, 1405, 1476
TatI WGTACW 2 cut(s) 250, 299
TauI GCSGC 1 cut(s) 1484
TfiI GAWTC 4 cut(s) 86, 953, 1253, 1569
Tru1I TTAA 4 cut(s) 809, 878, 1434, 1503
Tru9I TTAA 4 cut(s) 809, 878, 1434, 1503
TscAI CASTG 3 cut(s) 183, 552, 975
TseFI GTSAC 1 cut(s) 1555
TseI GCWGC 6 cut(s) 44, 530, 1031, 1052, 1088, 1410
Tsp45I GTSAC 1 cut(s) 1555
TspDTI ATGAA 8 cut(s) 229, 348, 395, 429, 888, 912, 960, 1203
TspGWI ACGGA 3 cut(s) 1083, 1503, 1574
TspRI CASTG 3 cut(s) 183, 552, 975
VpaK11BI GGWCC 2 cut(s) 556, 1511
XagI CCTNNNNNAGG 1 cut(s) 1060
XapI RAATTY 4 cut(s) 98, 325, 840, 1260
XceI RCATGY 3 cut(s) 1043, 1100, 1441
XcmI CCANNNNNNNNNTGG 1 cut(s) 1469
XhoI CTCGAG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 1170
XspI CTAG 8 cut(s) 431, 527, 584, 1152, 1385, 1520, 1524, 1573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.