Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010496

Physical Location & Seq

Genomic Coordinates Reverse (-)

39932063 .. 39934525

Gene Structure 2463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1281500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2412 bp

ATGCCTCAGCGAAGTTGGCCGCTTCAATGTCTTTGGTTACTTGCTTCTCTGGGTAGAATTTCTGGTGATTTTCGGGTAAAATTCAGCTATCGGACAACTTCAGTTTGCCCATCTGTTCTTTATCTTCTACTTGCTGATGCTAGTTGTAGTGTAGCTCGGATATCGGAATCTCATCTTCGAGCTTATTCGAGTGCCGGGTCAGTTTGTGGGTGTCTCGGCTCTTCTTCTTTGGCCAAGTCAAAAGTCCGAGATGATAAACTTACACCTAAAGGAAGCTTCTTTTCGACTATGGCGGGAACAATCTTGGTCCAGGCTCGAGATCCGGCTAAGTTAACTGTGGAGATACAGAATGCAATTGATGAGCACAGACTAAGTGATGCTTGGAAGTTGCATGAGCAGCATATGCAGATGGAAGGGTTTCCTAGGAAATCCGTTATGAATGAGCTTGTAACGAGTTTCGTGGAAAGCTTTGATGTTCAGTGGCTGGAGAAAGCGTACGGGCTGGTAGAACATGCTATTGAGAAAAACAAACTTAATTTGTTAGAGAAGGAGACGCTGGTTTATCTGTCTTTTGGGCTTGCCAAAGCAGGATTACCTAATCCTGTGTCGACTGTTCTGAGAAAGATGGTAGAGATGGAACAGTTTCCCCCTGTTGCTGCCTGGTCTGCAATCTTGGCTTACATGTCTCGAACAGCTCAAGGGGCTTACCTTGCTGCAGAGTTGATTCTCGAGATAGGTTACCTATTCCAAGATAACAGGATCGATCCGCGTAAGAAGTGTAATGCACCTTTGATTGCTATGAAGCCTAATACTACTGCTTTCAACGTTGCTTTGGCTGGCTGTCTCATGTTTGGGACAACTAGGAAAGCCGAGCAGATCCTTGACATGATGCCTCGGGTTGGTGTCAAAATGGACGCTAACTTGTTGATATTAATGGCACAAGTATATGAGAGAAATGGACGAAGAGATGAGCTTACGAAACTTCAACGATACATAGATGAAGCTCACAACCTTACCGATATCCAGTATCGGCAATTCTACAACTGCTTGTTGACTTGCCATTTGAAATTCGGGGATCTAGATTCTGCATCCAACATGGTCTTGGAAATGCTAAGGAAAGCAAAAGCAGCACGAAATTCTCTTGCAGTAGCAACACTGGTATTTGATGCTGCTGGAAAGGGCAACCAGTCTCTTGGACCGGGATCTCTGTCCAGTAAAAGTTCAAGCTATGTAGAATCAAATGGTTGTGAAGAGAGTAGCCCGTTAGTATCTTATGATGAGTTTTCTAGGGATAGAAATTTCTTGGGACTTGAGACTGATGCAAAGGAAGTACTTGGTGCAGTGTTAGCTAAGTTGCAGAGCCAAGTCAAATTGGTAACAACTGACCGCGGTATCCTCCAACCAACTGAAAAACTTTTCGTGAAATTAGTCAAGGCGTTTCTGGAAGCGGACAAGACCAAGGATTTGGCAGAGTTTCTTATAAAGGCCGACAAAGAAGACTCCCCAGCATCCAACGACGATTCAGCTTTGGTTCATGTAATTAATTCGTGCATATCACTTGGATGGTTAGACAAGGCGCATGACCTTCTCGATGAGATGTTTTTGGCTGGTGTAAGAACTGGTTCAGCTGTATACTCCTCTCTTTTAAAAGCATATTGTCAAGCAAAGCAAGCAGGAAATGCAGCATCACTTTTAAGAGATGCTCGTAAAGCCGGGATCCAGCCAGACTCAAGCTCTTACGAGGCATTGATCCAATCGAGGGTTCTTCAAAATGATACACAGGGAGCCCTCCATTTGTACAGAGAGATGAAGGAGGCTAAGATACCAAAAGCTGGCCATCAGGAGTTCGAGAGGTTAGTACATGAATGTGCAGGGGACGGTGAACCTAAGTTGATGGTAAAGCTCTTGCAGGAAATCAAGGAAGGGCAGAAATCCGATGCTGGGGTTCACGACTGGAACAACGTAATCCATTTCTTCTGCAAGAAGAGACTCATGCAAGATGCTGAGAAGGCGCTGACGAAAATGAGAAGCCTCGGGTGCACCCCAAATGCACAAACATTCCATTCTATGGTAACTGGTTATGCTGCTGTAGGAGGAAAGTATACAGAAGTGACCGAGTTGTGGGGTGAGATGAAGTCCATTGCTGCTGCCACCTCAATGAAATTCGACCAGGAGCTCCTGGATTCGGTTCTTTACACCTTCGTGAGGGGCGGATTTTTCAGCCGAGCAAATGAAGTTGTGGAGATGATGGAGAAAGGGAAGATGTTTGTCGACAAATACAAGTACCGGACGCTTTTCTTGAAGTACCATAGAACAAGTTACAAGGGCAAGGCTCCCAAATTCCAGACAGAATCCCAACATAAAAAGAGGGAGGCTGCATTGGCGTTTAAGAATTGGGTTGGAGTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

804

Amino Acids

89.51

Weight (kDa)

8.72

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_At1g68980	PF25245	107 - 236	9.2e-12	At1g68980, TPR repeats
PPR_2	PF13041	543 - 585	7.3e-06	PPR repeat family
PPR_2	PF13041	652 - 695	1.5e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03100
fragaria_vesca	FvH4_5g32870
malus_domestica	MD11G1281500.v1.1
prunus_persica	Prupe.8G237400_v2.0.a1
pyrus_communis	pycom11g24960
rosa_chinensis	RchiOBHm_Chr7g0230741 RchiOBHm_Chr7g0230851
rosa_laevigata	RLG00000001478
rosa_multiflora	Rmu_sc0007883.1_g000006 Rmu_sc0010407.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229770
rosa_rugosa	Rorug07G0262500
rosa_samantha	Rh7AG414200 Rh7AG414900 Rh7BG391400 Rh7CG433100 Rh7CG433600 Rh7DG409800
rosa_wichuraiana	Rw7G034240 Rw7G034270 Rw7G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1481
AccB7I	CCANNNNNTGG	2 cut(s)	1832, 2068
AccI	GTMKAC	4 cut(s)	608, 1632, 2102, 2271
AccII	CGCG	2 cut(s)	769, 1389
AciI	CCGC	7 cut(s)	20, 293, 767, 1387, 1389, 1448, 2211
AclI	AACGTT	1 cut(s)	825
AclWI	GGATC	9 cut(s)	314, 758, 767, 871, 1083, 1210, 1711, 1724, 1744
AcoI	YGGCCR	3 cut(s)	17, 231, 1834
AcsI	RAATTY	7 cut(s)	57, 80, 1067, 1135, 1297, 2162, 2339
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	6 cut(s)	497, 1332, 1799, 1860, 2285, 2306
AfiI	CCNNNNNNNGG	8 cut(s)	899, 1759, 1832, 1941, 2068, 2121, 2185, 2205
AflIII	ACRYGT	1 cut(s)	681
AgsI	TTSAA	7 cut(s)	26, 823, 986, 1066, 1224, 1769, 2302
AjnI	CCWGG	4 cut(s)	309, 659, 2169, 2178
AjuI	GAANNNNNNNTTGG	2 cut(s)	1746, 1778
AleI	CACNNNNGTG	1 cut(s)	2201
Alw21I	GWGCWC	3 cut(s)	366, 2042, 2178
Alw26I	GTCTC	7 cut(s)	218, 545, 690, 848, 1194, 1307, 1981
Alw44I	GTGCAC	1 cut(s)	2038
AlwI	GGATC	9 cut(s)	314, 758, 767, 871, 1083, 1210, 1711, 1724, 1744
AlwNI	CAGNNNCTG	1 cut(s)	484
Ama87I	CYCGRG	4 cut(s)	315, 728, 894, 2033
AoxI	GGCC	4 cut(s)	17, 231, 1485, 1834
ApaLI	GTGCAC	1 cut(s)	2038
ApoI	RAATTY	7 cut(s)	57, 80, 1067, 1135, 1297, 2162, 2339
ArsI	GACNNNNNNTTYG	4 cut(s)	1045, 1077, 1447, 1479
AseI	ATTAAT	2 cut(s)	932, 1542
Asp700I	GAANNNNTTC	3 cut(s)	417, 642, 1621
AspA2I	CCTAGG	1 cut(s)	422
AspLEI	GCGC	2 cut(s)	1579, 2014
AspS9I	GGNCC	2 cut(s)	307, 1196
AsuC2I	CCSGG	3 cut(s)	196, 1200, 1714
AsuHPI	GGTGA	3 cut(s)	77, 1892, 2138
AvaI	CYCGRG	4 cut(s)	315, 728, 894, 2033
AvaII	GGWCC	2 cut(s)	307, 1196
AvrII	CCTAGG	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	2042
BaeI	ACNNNNGTAYC	2 cut(s)	1375, 1408
BalI	TGGCCA	2 cut(s)	233, 1836
BamHI	GGATCC	1 cut(s)	1716
BanII	GRGCYC	2 cut(s)	1789, 2178
BbsI	GAAGAC	1 cut(s)	1503
Bbv12I	GWGCWC	3 cut(s)	366, 2042, 2178
BbvCI	CCTCAGC	1 cut(s)	6
BccI	CCATC	8 cut(s)	118, 403, 619, 628, 1557, 1845, 1888, 2242
BciT130I	CCWGG	4 cut(s)	311, 661, 2171, 2180
BciVI	GTATCC	1 cut(s)	1403
BcnI	CCSGG	3 cut(s)	196, 1200, 1714
BcoDI	GTCTC	7 cut(s)	218, 545, 690, 848, 1194, 1307, 1981
BfaI	CTAG	5 cut(s)	141, 423, 861, 1079, 1287
BfmI	CTRYAG	2 cut(s)	714, 2088
BfoI	RGCGCY	1 cut(s)	2015
BfuI	GTATCC	1 cut(s)	1403
BlnI	CCTAGG	1 cut(s)	422
BmcAI	AGTACT	1 cut(s)	1332
Bme1390I	CCNGG	7 cut(s)	196, 311, 661, 1200, 1714, 2171, 2180
Bme18I	GGWCC	2 cut(s)	307, 1196
BmeT110I	CYCGRG	4 cut(s)	315, 728, 894, 2033
BmgT120I	GGNCC	2 cut(s)	307, 1196
BmiI	GGNNCC	3 cut(s)	1718, 1786, 2334
BmrFI	CCNGG	7 cut(s)	196, 311, 661, 1200, 1714, 2171, 2180
BpiI	GAAGAC	1 cut(s)	1503
BpmI	CTGGAG	1 cut(s)	506
Bpu10I	CCTNAGC	2 cut(s)	6, 1112
BpuEI	CTTGAG	3 cut(s)	681, 1331, 1714
BpuMI	CCSGG	3 cut(s)	196, 1200, 1714
Bsa29I	ATCGAT	1 cut(s)	762
BsaJI	CCNNGG	5 cut(s)	422, 893, 1387, 1458, 2032
BsaWI	WCCGGW	1 cut(s)	2286
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	8 cut(s)	899, 1759, 1832, 1941, 2068, 2121, 2185, 2205
Bse1I	ACTGG	7 cut(s)	1024, 1161, 1186, 1212, 1624, 1958, 2080
Bse3DI	GCAATG	1 cut(s)	2139
BseBI	CCWGG	4 cut(s)	311, 661, 2171, 2180
BseCI	ATCGAT	1 cut(s)	762
BseDI	CCNNGG	5 cut(s)	422, 893, 1387, 1458, 2032
BseGI	GGATG	3 cut(s)	1088, 1508, 1568
BseLI	CCNNNNNNNGG	8 cut(s)	899, 1759, 1832, 1941, 2068, 2121, 2185, 2205
BseMI	GCAATG	1 cut(s)	2139
BseMII	CTCAG	3 cut(s)	20, 608, 1995
BseNI	ACTGG	7 cut(s)	1024, 1161, 1186, 1212, 1624, 1958, 2080
BseRI	GAGGAG	1 cut(s)	1627
BseSI	GKGCMC	1 cut(s)	2042
BseYI	CCCAGC	2 cut(s)	1504, 1940
BsgI	GTGCAG	2 cut(s)	1359, 1890
Bsh1236I	CGCG	2 cut(s)	769, 1389
BshFI	GGCC	4 cut(s)	19, 233, 1487, 1836
BshVI	ATCGAT	1 cut(s)	762
BsiHKAI	GWGCWC	3 cut(s)	366, 2042, 2178
BsiHKCI	CYCGRG	4 cut(s)	315, 728, 894, 2033
BsiSI	CCGG	5 cut(s)	195, 323, 1199, 1713, 2287
BsiWI	CGTACG	1 cut(s)	495
BslFI	GGGAC	3 cut(s)	868, 1320, 1889
BslI	CCNNNNNNNGG	8 cut(s)	899, 1759, 1832, 1941, 2068, 2121, 2185, 2205
BsmAI	GTCTC	7 cut(s)	218, 545, 690, 848, 1194, 1307, 1981
BsmBI	CGTCTC	1 cut(s)	545
BsmFI	GGGAC	3 cut(s)	868, 1320, 1889
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	4 cut(s)	19, 233, 1487, 1836
BsoBI	CYCGRG	4 cut(s)	315, 728, 894, 2033
Bsp1286I	GDGCHC	4 cut(s)	366, 1789, 2042, 2178
Bsp1407I	TGTACA	1 cut(s)	1797
Bsp143I	GATC	8 cut(s)	319, 759, 763, 876, 1075, 1202, 1716, 1749
BspACI	CCGC	7 cut(s)	20, 293, 767, 1387, 1389, 1448, 2211
BspANI	GGCC	4 cut(s)	19, 233, 1487, 1836
BspCNI	CTCAG	3 cut(s)	19, 609, 1996
BspDI	ATCGAT	1 cut(s)	762
BspFNI	CGCG	2 cut(s)	769, 1389
BspLI	GGNNCC	3 cut(s)	1718, 1786, 2334
BspMAI	CTGCAG	1 cut(s)	718
BspPI	GGATC	9 cut(s)	314, 758, 767, 871, 1083, 1210, 1711, 1724, 1744
BspQI	GCTCTTC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	2139
BsrGI	TGTACA	1 cut(s)	1797
BsrI	ACTGG	7 cut(s)	1024, 1161, 1186, 1212, 1624, 1958, 2080
BssECI	CCNNGG	5 cut(s)	422, 893, 1387, 1458, 2032
BssMI	GATC	8 cut(s)	319, 759, 763, 876, 1075, 1202, 1716, 1749
BssNAI	GTATAC	2 cut(s)	1633, 2103
BssT1I	CCWWGG	2 cut(s)	422, 1458
Bst1107I	GTATAC	2 cut(s)	1633, 2103
Bst2UI	CCWGG	4 cut(s)	311, 661, 2171, 2180
Bst4CI	ACNGT	4 cut(s)	337, 613, 642, 1880
Bst6I	CTCTTC	4 cut(s)	226, 958, 1245, 1979
BstAPI	GCANNNNNTGC	2 cut(s)	403, 1679
BstAUI	TGTACA	1 cut(s)	1797
BstC8I	GCNNGC	4 cut(s)	579, 838, 1671, 1834
BstDEI	CTNAG	9 cut(s)	6, 327, 371, 617, 1112, 1350, 1818, 1887, 2004
BstDSI	CCRYGG	1 cut(s)	1387
BstEII	GGTNACC	1 cut(s)	737
BstENI	CCTNNNNNAGG	1 cut(s)	2203
BstF5I	GGATG	3 cut(s)	1088, 1508, 1568
BstFNI	CGCG	2 cut(s)	769, 1389
BstH2I	RGCGCY	1 cut(s)	2015
BstHHI	GCGC	2 cut(s)	1579, 2014
BstKTI	GATC	8 cut(s)	322, 762, 766, 879, 1078, 1205, 1719, 1752
BstMAI	GTCTC	7 cut(s)	218, 545, 690, 848, 1194, 1307, 1981
BstMBI	GATC	8 cut(s)	319, 759, 763, 876, 1075, 1202, 1716, 1749
BstNI	CCWGG	4 cut(s)	311, 661, 2171, 2180
BstNSI	RCATGY	2 cut(s)	515, 685
BstPI	GGTNACC	1 cut(s)	737
BstSCI	CCNGG	7 cut(s)	194, 309, 659, 1198, 1712, 2169, 2178
BstSFI	CTRYAG	2 cut(s)	714, 2088
BstSLI	GKGCMC	1 cut(s)	2042
BstUI	CGCG	2 cut(s)	769, 1389
BstV2I	GAAGAC	1 cut(s)	1503
BstX2I	RGATCY	5 cut(s)	319, 876, 1075, 1202, 1716
BstXI	CCANNNNNNTGG	2 cut(s)	1193, 1465
BstYI	RGATCY	5 cut(s)	319, 876, 1075, 1202, 1716
BstZ17I	GTATAC	2 cut(s)	1633, 2103
Bsu15I	ATCGAT	1 cut(s)	762
BsuI	GTATCC	1 cut(s)	1403
BsuRI	GGCC	4 cut(s)	19, 233, 1487, 1836
BsuTUI	ATCGAT	1 cut(s)	762
BtgI	CCRYGG	1 cut(s)	1387
BtsCI	GGATG	3 cut(s)	1088, 1508, 1568
BtsI	GCAGTG	1 cut(s)	1347
BtsIMutI	CAGTG	3 cut(s)	485, 1154, 1347
Cac8I	GCNNGC	4 cut(s)	579, 838, 1671, 1834
CaiI	CAGNNNCTG	1 cut(s)	484
CfoI	GCGC	2 cut(s)	1579, 2014
Cfr13I	GGNCC	2 cut(s)	307, 1196
Cfr42I	CCGCGG	1 cut(s)	1390
ClaI	ATCGAT	1 cut(s)	762
CseI	GACGC	3 cut(s)	562, 923, 2299
Csp6I	GTAC	6 cut(s)	496, 1331, 1798, 1859, 2284, 2305
CviQI	GTAC	6 cut(s)	496, 1331, 1798, 1859, 2284, 2305
DdeI	CTNAG	9 cut(s)	6, 327, 371, 617, 1112, 1350, 1818, 1887, 2004
DpnI	GATC	8 cut(s)	321, 761, 765, 878, 1077, 1204, 1718, 1751
DpnII	GATC	8 cut(s)	319, 759, 763, 876, 1075, 1202, 1716, 1749
DraI	TTTAAA	1 cut(s)	1647
EaeI	YGGCCR	3 cut(s)	17, 231, 1834
Eam1104I	CTCTTC	4 cut(s)	226, 958, 1245, 1979
EarI	CTCTTC	4 cut(s)	226, 958, 1245, 1979
EciI	GGCGGA	1 cut(s)	2226
Ecl136II	GAGCTC	1 cut(s)	2176
Eco130I	CCWWGG	2 cut(s)	422, 1458
Eco24I	GRGCYC	2 cut(s)	1789, 2178
Eco32I	GATATC	2 cut(s)	162, 1021
Eco47I	GGWCC	2 cut(s)	307, 1196
Eco53kI	GAGCTC	1 cut(s)	2176
Eco57I	CTGAAG	1 cut(s)	84
Eco88I	CYCGRG	4 cut(s)	315, 728, 894, 2033
Eco91I	GGTNACC	1 cut(s)	737
EcoICRI	GAGCTC	1 cut(s)	2176
EcoNI	CCTNNNNNAGG	1 cut(s)	2203
EcoO65I	GGTNACC	1 cut(s)	737
EcoRII	CCWGG	4 cut(s)	309, 659, 2169, 2178
EcoRV	GATATC	2 cut(s)	162, 1021
EcoT14I	CCWWGG	2 cut(s)	422, 1458
EcoT38I	GRGCYC	2 cut(s)	1789, 2178
ErhI	CCWWGG	2 cut(s)	422, 1458
Esp3I	CGTCTC	1 cut(s)	545
FalI	AAGNNNNNCTT	2 cut(s)	364, 396
FaqI	GGGAC	3 cut(s)	868, 1320, 1889
FauI	CCCGC	1 cut(s)	286
FauNDI	CATATG	1 cut(s)	402
FblI	GTMKAC	4 cut(s)	608, 1632, 2102, 2271
FokI	GGATG	3 cut(s)	1075, 1495, 1575
FriOI	GRGCYC	2 cut(s)	1789, 2178
FspBI	CTAG	5 cut(s)	141, 423, 861, 1079, 1287
GlaI	GCGC	2 cut(s)	1578, 2013
GsaI	CCCAGC	2 cut(s)	1508, 1944
GsuI	CTGGAG	1 cut(s)	506
HaeII	RGCGCY	1 cut(s)	2015
HaeIII	GGCC	4 cut(s)	19, 233, 1487, 1836
HapII	CCGG	5 cut(s)	195, 323, 1199, 1713, 2287
HgaI	GACGC	3 cut(s)	562, 923, 2299
HhaI	GCGC	2 cut(s)	1579, 2014
Hin6I	GCGC	2 cut(s)	1577, 2012
HinP1I	GCGC	2 cut(s)	1577, 2012
HincII	GTYRAC	4 cut(s)	333, 609, 1053, 2272
HindII	GTYRAC	4 cut(s)	333, 609, 1053, 2272
HindIII	AAGCTT	2 cut(s)	274, 466
HpaI	GTTAAC	1 cut(s)	333
HpaII	CCGG	5 cut(s)	195, 323, 1199, 1713, 2287
HphI	GGTGA	3 cut(s)	77, 1892, 2138
Hpy166II	GTNNAC	9 cut(s)	333, 609, 1053, 1633, 1883, 1948, 2040, 2103, 2272
Hpy188I	TCNGA	6 cut(s)	93, 159, 166, 248, 618, 1936
Hpy8I	GTNNAC	9 cut(s)	333, 609, 1053, 1633, 1883, 1948, 2040, 2103, 2272
Hpy99I	CGWCG	1 cut(s)	1520
HpyAV	CCTTC	7 cut(s)	407, 541, 1595, 1804, 1916, 2002, 2209
HpyCH4III	ACNGT	4 cut(s)	337, 613, 642, 1880
HpyCH4IV	ACGT	2 cut(s)	825, 1962
HpyF3I	CTNAG	9 cut(s)	6, 327, 371, 617, 1112, 1350, 1818, 1887, 2004
HpySE526I	ACGT	2 cut(s)	825, 1962
HspAI	GCGC	2 cut(s)	1577, 2012
KspAI	GTTAAC	1 cut(s)	333
KspI	CCGCGG	1 cut(s)	1390
Kzo9I	GATC	8 cut(s)	319, 759, 763, 876, 1075, 1202, 1716, 1749
LguI	GCTCTTC	1 cut(s)	226
LmnI	GCTCC	4 cut(s)	1784, 2173, 2181, 2338
MaeI	CTAG	5 cut(s)	141, 423, 861, 1079, 1287
MaeII	ACGT	2 cut(s)	825, 1962
MaeIII	GTNAC	7 cut(s)	36, 448, 737, 1375, 2071, 2110, 2318
MalI	GATC	8 cut(s)	321, 761, 765, 878, 1077, 1204, 1718, 1751
MboI	GATC	8 cut(s)	319, 759, 763, 876, 1075, 1202, 1716, 1749
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	5 cut(s)	319, 876, 1075, 1202, 1716
MhlI	GDGCHC	4 cut(s)	366, 1789, 2042, 2178
MlsI	TGGCCA	2 cut(s)	233, 1836
MluNI	TGGCCA	2 cut(s)	233, 1836
MlyI	GAGTC	3 cut(s)	1493, 1721, 1983
MmeI	TCCRAC	4 cut(s)	1116, 1423, 1536, 2380
Mox20I	TGGCCA	2 cut(s)	233, 1836
MroXI	GAANNNNTTC	3 cut(s)	417, 642, 1621
MscI	TGGCCA	2 cut(s)	233, 1836
MseI	TTAA	7 cut(s)	332, 534, 932, 1542, 1646, 1694, 2388
MslI	CAYNNNNRTG	4 cut(s)	1561, 1866, 2156, 2201
Msp20I	TGGCCA	2 cut(s)	233, 1836
MspA1I	CMGCKG	2 cut(s)	1389, 1628
MspI	CCGG	5 cut(s)	195, 323, 1199, 1713, 2287
MspR9I	CCNGG	7 cut(s)	196, 311, 661, 1200, 1714, 2171, 2180
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	355
MvaI	CCWGG	4 cut(s)	311, 661, 2171, 2180
MvnI	CGCG	2 cut(s)	769, 1389
NciI	CCSGG	3 cut(s)	196, 1200, 1714
NdeI	CATATG	1 cut(s)	402
NdeII	GATC	8 cut(s)	319, 759, 763, 876, 1075, 1202, 1716, 1749
NlaIV	GGNNCC	3 cut(s)	1718, 1786, 2334
NmeAIII	GCCGAG	3 cut(s)	195, 895, 2249
NmuCI	GTSAC	1 cut(s)	2110
NspI	RCATGY	2 cut(s)	515, 685
OliI	CACNNNNGTG	1 cut(s)	2201
PaeR7I	CTCGAG	2 cut(s)	315, 728
PciI	ACATGT	1 cut(s)	681
PciSI	GCTCTTC	1 cut(s)	226
PctI	GAATGC	1 cut(s)	355
PdmI	GAANNNNTTC	3 cut(s)	417, 642, 1621
PfeI	GAWTC	7 cut(s)	167, 724, 1082, 1235, 1520, 2183, 2351
Pfl23II	CGTACG	1 cut(s)	495
PflMI	CCANNNNNTGG	2 cut(s)	1832, 2068
PfoI	TCCNGGA	1 cut(s)	2178
PleI	GAGTC	3 cut(s)	1493, 1721, 1983
PpsI	GAGTC	3 cut(s)	1493, 1721, 1983
PscI	ACATGT	1 cut(s)	681
PshBI	ATTAAT	2 cut(s)	932, 1542
PsiI	TTATAA	1 cut(s)	1481
Psp124BI	GAGCTC	1 cut(s)	2178
Psp1406I	AACGTT	1 cut(s)	825
Psp6I	CCWGG	4 cut(s)	309, 659, 2169, 2178
PspEI	GGTNACC	1 cut(s)	737
PspFI	CCCAGC	2 cut(s)	1504, 1940
PspGI	CCWGG	4 cut(s)	309, 659, 2169, 2178
PspLI	CGTACG	1 cut(s)	495
PspN4I	GGNNCC	3 cut(s)	1718, 1786, 2334
PspPI	GGNCC	2 cut(s)	307, 1196
PstI	CTGCAG	1 cut(s)	718
PstNI	CAGNNNCTG	1 cut(s)	484
PsuI	RGATCY	5 cut(s)	319, 876, 1075, 1202, 1716
PvuII	CAGCTG	1 cut(s)	1628
RsaI	GTAC	6 cut(s)	497, 1332, 1799, 1860, 2285, 2306
RsaNI	GTAC	6 cut(s)	496, 1331, 1798, 1859, 2284, 2305
RseI	CAYNNNNRTG	4 cut(s)	1561, 1866, 2156, 2201
SacI	GAGCTC	1 cut(s)	2178
SacII	CCGCGG	1 cut(s)	1390
SalI	GTCGAC	2 cut(s)	607, 2270
SapI	GCTCTTC	1 cut(s)	226
SaqAI	TTAA	7 cut(s)	332, 534, 932, 1542, 1646, 1694, 2388
Sau3AI	GATC	8 cut(s)	319, 759, 763, 876, 1075, 1202, 1716, 1749
Sau96I	GGNCC	2 cut(s)	307, 1196
ScaI	AGTACT	1 cut(s)	1332
SchI	GAGTC	3 cut(s)	1493, 1721, 1983
ScrFI	CCNGG	7 cut(s)	196, 311, 661, 1200, 1714, 2171, 2180
SduI	GDGCHC	4 cut(s)	366, 1789, 2042, 2178
SfcI	CTRYAG	2 cut(s)	714, 2088
Sfr274I	CTCGAG	2 cut(s)	315, 728
Sfr303I	CCGCGG	1 cut(s)	1390
SgrBI	CCGCGG	1 cut(s)	1390
SinI	GGWCC	2 cut(s)	307, 1196
SlaI	CTCGAG	2 cut(s)	315, 728
SmiMI	CAYNNNNRTG	4 cut(s)	1561, 1866, 2156, 2201
SmlI	CTYRAG	5 cut(s)	315, 696, 728, 1310, 1729
SmoI	CTYRAG	5 cut(s)	315, 696, 728, 1310, 1729
SsiI	CCGC	7 cut(s)	20, 293, 767, 1387, 1389, 1448, 2211
SspMI	CTAG	5 cut(s)	141, 423, 861, 1079, 1287
SstI	GAGCTC	1 cut(s)	2178
StyD4I	CCNGG	7 cut(s)	194, 309, 659, 1198, 1712, 2169, 2178
StyI	CCWWGG	2 cut(s)	422, 1458
TaaI	ACNGT	4 cut(s)	337, 613, 642, 1880
TaiI	ACGT	2 cut(s)	828, 1965
TaqII	GACCGA	1 cut(s)	2129
TatI	WGTACW	3 cut(s)	1330, 1797, 1858
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	7 cut(s)	167, 724, 1082, 1235, 1520, 2183, 2351
Tru1I	TTAA	7 cut(s)	332, 534, 932, 1542, 1646, 1694, 2388
Tru9I	TTAA	7 cut(s)	332, 534, 932, 1542, 1646, 1694, 2388
TscAI	CASTG	3 cut(s)	485, 1161, 1347
TseFI	GTSAC	1 cut(s)	2110
Tsp45I	GTSAC	1 cut(s)	2110
TspDTI	ATGAA	9 cut(s)	452, 815, 1014, 1523, 1823, 1878, 2147, 2174, 2247
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	3 cut(s)	485, 1161, 1347
Van91I	CCANNNNNTGG	2 cut(s)	1832, 2068
VneI	GTGCAC	1 cut(s)	2038
VpaK11BI	GGWCC	2 cut(s)	307, 1196
VspI	ATTAAT	2 cut(s)	932, 1542
XagI	CCTNNNNNAGG	1 cut(s)	2203
XapI	RAATTY	7 cut(s)	57, 80, 1067, 1135, 1297, 2162, 2339
XbaI	TCTAGA	1 cut(s)	1078
XceI	RCATGY	2 cut(s)	515, 685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1099
XhoI	CTCGAG	2 cut(s)	315, 728
XmaJI	CCTAGG	1 cut(s)	422
XmiI	GTMKAC	4 cut(s)	608, 1632, 2102, 2271
XmnI	GAANNNNTTC	3 cut(s)	417, 642, 1621
XspI	CTAG	5 cut(s)	141, 423, 861, 1079, 1287
ZrmI	AGTACT	1 cut(s)	1332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.