Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010496

Physical Location & Seq

Genomic Coordinates Reverse (-)

55786496 .. 55790049

Gene Structure 3554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG414900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTCTCAAACAGCTCAAGGGGCTTATGTTGCTGCTGAGTTGATTCTTGAGATAGGTTACTTGTTCCAAGATCACAGGGTCGACCCACGTAAGAAGTGTAATGCGCCTTTGATTGCTATGAAGCCTAATACTACTGCTTTCAACATTGCTTTGGCTGGTTGTCTCTTGTTTGGAACAACTAAGAAAGCAGAGCAGCTCCTTGACACGATGCCTCGAGTTGGTATCAAAACGGATGCTAACTTATTGATATTAATGGCACAAATATATGAGAGAAATGGATGGAGAGATGAGCTTAGAAAACTTCAAAGATACATAGATGAAGCCCATAACCTAAGTGATGTCCAGTTTTGCCAGTTCTACAATTGCTTGCTGGCATGCCATTTGAAATTCGGGGATTTAGACTCTGCATCTAACATGGTTTTGGAAATGCTGCGGAAAGCAAAAGAAGTAAGAGGTTCTCTTGCAGTAGCAACGCTGGTATTTGATGCTGCTGGAAGGGGAAGCAAGTTCCCTCATGGAGTTAATTCTGGATCCTGGCATTATTCAAGCCATGGAGAATCATATGCTTATGGAGACAATAGGTTACCTGGTAATCTTGTATTATCTTACAAAGAGTTTTCAAGGGATAGAAATTTCTTGAGACTTGAGGTTGAGGCTAAGGAAGTGCTGGGTGCATTGTTAGCTAAATTGCAGAGCCAAGTTGAATTGGTAACAACTGACCACAGTATCCTCCAGCCAACTGAAAAAATATTTGCGAAATTAGTCAAGGCCTTCCTAGAAGCAGACAAAACCAAGGATTTGGCTGCCTTTCTTATAAAGGCAGATAAAGAAGCTTCCCCAGCTTCCAGTGATGATTCAGCCTTGGTTCATGTCATTAATTCATGCATATCGCTTGGATGGTTAAACAAGGCACATGACCTTCTTGATGAAATGTGCTTGGCTGGTGTAAGAACTGGTTCTTCTGTATACGCCGCTCTTTTAAAAGCATATTGTGAAGCAAACCAAGCAGGAAATGCAGCATCACTATTAAGAGATGCTCGTAAGGCTGGTATCCAGCTAGATGCAAGCAGTTATGAGGCACTGATCCGATCAATGGTGCTTCAAAATGATACACAGGGAGCTCTTCATTTGTACACAGAGAGGTTGAGAGGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

385

Amino Acids

42.55

Weight (kDa)

7.13

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03100
fragaria_vesca	FvH4_5g32870
malus_domestica	MD11G1281500.v1.1
prunus_persica	Prupe.8G237400_v2.0.a1
pyrus_communis	pycom11g24960
rosa_chinensis	RchiOBHm_Chr7g0230741 RchiOBHm_Chr7g0230851
rosa_laevigata	RLG00000001478
rosa_multiflora	Rmu_sc0007883.1_g000006 Rmu_sc0010407.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229770
rosa_rugosa	Rorug07G0262500
rosa_samantha	Rh7AG414200 Rh7AG414900 Rh7BG391400 Rh7CG433100 Rh7CG433600 Rh7DG409800
rosa_wichuraiana	Rw7G034240 Rw7G034270 Rw7G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	815
AccBSI	CCGCTC	1 cut(s)	974
AccI	GTMKAC	2 cut(s)	81, 966
AciI	CCGC	2 cut(s)	433, 972
AclWI	GGATC	3 cut(s)	525, 538, 1078
AcsI	RAATTY	2 cut(s)	386, 631
AfaI	GTAC	1 cut(s)	1133
AfiI	CCNNNNNNNGG	2 cut(s)	218, 1093
AgsI	TTSAA	7 cut(s)	142, 305, 385, 546, 621, 704, 1103
AjnI	CCWGG	2 cut(s)	533, 586
AluBI	AGCT	8 cut(s)	14, 196, 292, 683, 833, 842, 1057, 1121
AluI	AGCT	8 cut(s)	14, 196, 292, 683, 833, 842, 1057, 1121
Alw21I	GWGCWC	1 cut(s)	1123
Alw26I	GTCTC	4 cut(s)	9, 167, 567, 634
AlwI	GGATC	3 cut(s)	525, 538, 1078
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	1 cut(s)	768
ApeKI	GCWGC	6 cut(s)	32, 193, 430, 488, 803, 1016
ApoI	RAATTY	2 cut(s)	386, 631
AseI	ATTAAT	2 cut(s)	251, 876
Asp700I	GAANNNNTTC	1 cut(s)	955
AspLEI	GCGC	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	213
BaeI	ACNNNNGTAYC	2 cut(s)	709, 742
BamHI	GGATCC	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	1123
Bbv12I	GWGCWC	1 cut(s)	1123
BbvI	GCAGC	6 cut(s)	19, 205, 417, 475, 790, 1028
BccI	CCATC	2 cut(s)	273, 891
BciT130I	CCWGG	2 cut(s)	535, 588
BciVI	GTATCC	2 cut(s)	737, 1061
BcoDI	GTCTC	4 cut(s)	9, 167, 567, 634
BfaI	CTAG	2 cut(s)	776, 1058
BfuI	GTATCC	2 cut(s)	737, 1061
BisI	GCNGC	7 cut(s)	33, 194, 431, 489, 804, 972, 1017
BlsI	GCNGC	7 cut(s)	34, 195, 432, 490, 805, 973, 1018
Bme1390I	CCNGG	2 cut(s)	535, 588
BmeT110I	CYCGRG	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	2 cut(s)	535, 588
BmsI	GCATC	7 cut(s)	198, 223, 416, 475, 1024, 1028, 1051
BpmI	CTGGAG	1 cut(s)	716
Bpu10I	CCTNAGC	1 cut(s)	657
BpuEI	CTTGAG	3 cut(s)	68, 658, 665
BsaAI	YACGTR	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	550, 792, 861
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 1093
Bse1I	ACTGG	4 cut(s)	343, 352, 846, 958
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	535, 588
BseDI	CCNNGG	3 cut(s)	550, 792, 861
BseGI	GGATG	3 cut(s)	238, 284, 902
BseLI	CCNNNNNNNGG	2 cut(s)	218, 1093
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	4 cut(s)	343, 352, 846, 958
BseXI	GCAGC	6 cut(s)	19, 205, 417, 475, 790, 1028
BseYI	CCCAGC	2 cut(s)	667, 838
BshFI	GGCC	1 cut(s)	770
BsiHKAI	GWGCWC	1 cut(s)	1123
BsiHKCI	CYCGRG	1 cut(s)	213
BslI	CCNNNNNNNGG	2 cut(s)	218, 1093
BsmAI	GTCTC	4 cut(s)	9, 167, 567, 634
BsnI	GGCC	1 cut(s)	770
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	1123
Bsp1407I	TGTACA	1 cut(s)	1131
Bsp143I	GATC	4 cut(s)	70, 530, 1083, 1088
Bsp19I	CCATGG	1 cut(s)	550
BspACI	CCGC	2 cut(s)	433, 972
BspANI	GGCC	1 cut(s)	770
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	532
BspPI	GGATC	3 cut(s)	525, 538, 1078
BspQI	GCTCTTC	1 cut(s)	1128
BsrBI	CCGCTC	1 cut(s)	974
BsrDI	GCAATG	1 cut(s)	144
BsrGI	TGTACA	1 cut(s)	1131
BsrI	ACTGG	4 cut(s)	343, 352, 846, 958
BssECI	CCNNGG	3 cut(s)	550, 792, 861
BssMI	GATC	4 cut(s)	70, 530, 1083, 1088
BssNAI	GTATAC	1 cut(s)	967
BssT1I	CCWWGG	3 cut(s)	550, 792, 861
Bst1107I	GTATAC	1 cut(s)	967
Bst2UI	CCWGG	2 cut(s)	535, 588
Bst4CI	ACNGT	1 cut(s)	725
Bst6I	CTCTTC	1 cut(s)	1128
BstAPI	GCANNNNNTGC	1 cut(s)	1013
BstAUI	TGTACA	1 cut(s)	1131
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	4 cut(s)	368, 372, 376, 1066
BstDEI	CTNAG	5 cut(s)	36, 180, 293, 332, 657
BstDSI	CCRYGG	1 cut(s)	550
BstEII	GGTNACC	1 cut(s)	582
BstF5I	GGATG	3 cut(s)	238, 284, 902
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	4 cut(s)	73, 533, 1086, 1091
BstMAI	GTCTC	4 cut(s)	9, 167, 567, 634
BstMBI	GATC	4 cut(s)	70, 530, 1083, 1088
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 29, 680, 839, 1004, 1013, 1043
BstNI	CCWGG	2 cut(s)	535, 588
BstNSI	RCATGY	1 cut(s)	378
BstPI	GGTNACC	1 cut(s)	582
BstSCI	CCNGG	2 cut(s)	533, 586
BstV1I	GCAGC	6 cut(s)	19, 205, 417, 475, 790, 1028
BstX2I	RGATCY	1 cut(s)	530
BstXI	CCANNNNNNTGG	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	530
BstZ17I	GTATAC	1 cut(s)	967
BsuI	GTATCC	2 cut(s)	737, 1061
BsuRI	GGCC	1 cut(s)	770
BtgI	CCRYGG	1 cut(s)	550
BtsCI	GGATG	3 cut(s)	238, 284, 902
BtsIMutI	CAGTG	2 cut(s)	853, 1079
Cac8I	GCNNGC	4 cut(s)	368, 372, 376, 1066
CfoI	GCGC	1 cut(s)	106
CsiI	ACCWGGT	1 cut(s)	586
Csp6I	GTAC	1 cut(s)	1132
CviAII	CATG	7 cut(s)	375, 415, 515, 551, 869, 882, 914
CviQI	GTAC	1 cut(s)	1132
DdeI	CTNAG	5 cut(s)	36, 180, 293, 332, 657
DpnI	GATC	4 cut(s)	72, 532, 1085, 1090
DpnII	GATC	4 cut(s)	70, 530, 1083, 1088
DraI	TTTAAA	1 cut(s)	981
Eam1104I	CTCTTC	1 cut(s)	1128
EarI	CTCTTC	1 cut(s)	1128
Ecl136II	GAGCTC	1 cut(s)	1121
Eco130I	CCWWGG	3 cut(s)	550, 792, 861
Eco147I	AGGCCT	1 cut(s)	770
Eco24I	GRGCYC	1 cut(s)	1123
Eco53kI	GAGCTC	1 cut(s)	1121
Eco88I	CYCGRG	1 cut(s)	213
Eco91I	GGTNACC	1 cut(s)	582
EcoICRI	GAGCTC	1 cut(s)	1121
EcoO65I	GGTNACC	1 cut(s)	582
EcoRII	CCWGG	2 cut(s)	533, 586
EcoT14I	CCWWGG	3 cut(s)	550, 792, 861
EcoT22I	ATGCAT	1 cut(s)	887
EcoT38I	GRGCYC	1 cut(s)	1123
ErhI	CCWWGG	3 cut(s)	550, 792, 861
FaeI	CATG	7 cut(s)	378, 418, 518, 554, 872, 885, 917
FatI	CATG	7 cut(s)	374, 414, 514, 550, 868, 881, 913
FauNDI	CATATG	1 cut(s)	562
FblI	GTMKAC	2 cut(s)	81, 966
Fnu4HI	GCNGC	7 cut(s)	33, 194, 431, 489, 804, 972, 1017
FokI	GGATG	3 cut(s)	245, 291, 909
FriOI	GRGCYC	1 cut(s)	1123
Fsp4HI	GCNGC	7 cut(s)	33, 194, 431, 489, 804, 972, 1017
FspBI	CTAG	2 cut(s)	776, 1058
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	7 cut(s)	33, 194, 431, 489, 804, 972, 1017
GsaI	CCCAGC	2 cut(s)	671, 842
GsuI	CTGGAG	1 cut(s)	716
HaeIII	GGCC	1 cut(s)	770
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	7 cut(s)	378, 418, 518, 554, 872, 885, 917
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	4 cut(s)	43, 401, 557, 854
Hpy166II	GTNNAC	3 cut(s)	82, 967, 1134
Hpy188I	TCNGA	1 cut(s)	1088
Hpy188III	TCNNGA	4 cut(s)	47, 528, 637, 923
Hpy8I	GTNNAC	3 cut(s)	82, 967, 1134
HpyAV	CCTTC	3 cut(s)	489, 781, 929
HpyCH4III	ACNGT	1 cut(s)	725
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	7 cut(s)	407, 464, 674, 691, 885, 1016, 1064
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 29, 680, 839, 1004, 1013, 1043
HpyF3I	CTNAG	5 cut(s)	36, 180, 293, 332, 657
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	7 cut(s)	378, 418, 518, 554, 872, 885, 917
HspAI	GCGC	1 cut(s)	104
Kzo9I	GATC	4 cut(s)	70, 530, 1083, 1088
LguI	GCTCTTC	1 cut(s)	1128
LmnI	GCTCC	2 cut(s)	201, 1118
Lsp1109I	GCAGC	6 cut(s)	19, 205, 417, 475, 790, 1028
LweI	GCATC	7 cut(s)	198, 223, 416, 475, 1024, 1028, 1051
MabI	ACCWGGT	1 cut(s)	586
MaeI	CTAG	2 cut(s)	776, 1058
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	3 cut(s)	56, 582, 709
MalI	GATC	4 cut(s)	72, 532, 1085, 1090
MbiI	CCGCTC	1 cut(s)	974
MboI	GATC	4 cut(s)	70, 530, 1083, 1088
MboII	GAAGA	2 cut(s)	951, 1115
MfeI	CAATTG	1 cut(s)	361
MflI	RGATCY	1 cut(s)	530
MhlI	GDGCHC	1 cut(s)	1123
MluCI	AATT	8 cut(s)	361, 386, 523, 631, 686, 704, 758, 877
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	9 cut(s)	222, 446, 522, 640, 646, 740, 1069, 1134, 1142
Mph1103I	ATGCAT	1 cut(s)	887
MroXI	GAANNNNTTC	1 cut(s)	955
MseI	TTAA	6 cut(s)	251, 522, 876, 902, 980, 1028
MspR9I	CCNGG	2 cut(s)	535, 588
MunI	CAATTG	1 cut(s)	361
MvaI	CCWGG	2 cut(s)	535, 588
MwoI	GCNNNNNNNGC	7 cut(s)	20, 29, 680, 839, 1004, 1013, 1043
NcoI	CCATGG	1 cut(s)	550
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	4 cut(s)	70, 530, 1083, 1088
NlaIII	CATG	7 cut(s)	378, 418, 518, 554, 872, 885, 917
NlaIV	GGNNCC	1 cut(s)	532
NsiI	ATGCAT	1 cut(s)	887
NspI	RCATGY	1 cut(s)	378
PaeI	GCATGC	1 cut(s)	378
PaeR7I	CTCGAG	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	770
PciSI	GCTCTTC	1 cut(s)	1128
PdmI	GAANNNNTTC	1 cut(s)	955
PfeI	GAWTC	3 cut(s)	43, 557, 854
PkrI	GCNGC	7 cut(s)	34, 195, 432, 490, 805, 973, 1018
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
Ppu21I	YACGTR	1 cut(s)	89
PshBI	ATTAAT	2 cut(s)	251, 876
PsiI	TTATAA	1 cut(s)	815
Psp124BI	GAGCTC	1 cut(s)	1123
Psp6I	CCWGG	2 cut(s)	533, 586
PspEI	GGTNACC	1 cut(s)	582
PspFI	CCCAGC	2 cut(s)	667, 838
PspGI	CCWGG	2 cut(s)	533, 586
PspN4I	GGNNCC	1 cut(s)	532
PspXI	VCTCGAGB	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	530
RsaI	GTAC	1 cut(s)	1133
RsaNI	GTAC	1 cut(s)	1132
SacI	GAGCTC	1 cut(s)	1123
SalI	GTCGAC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	1128
SaqAI	TTAA	6 cut(s)	251, 522, 876, 902, 980, 1028
SatI	GCNGC	7 cut(s)	33, 194, 431, 489, 804, 972, 1017
Sau3AI	GATC	4 cut(s)	70, 530, 1083, 1088
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	2 cut(s)	535, 588
SduI	GDGCHC	1 cut(s)	1123
SexAI	ACCWGGT	1 cut(s)	586
SfaNI	GCATC	7 cut(s)	198, 223, 416, 475, 1024, 1028, 1051
Sfr274I	CTCGAG	1 cut(s)	213
SlaI	CTCGAG	1 cut(s)	213
SmlI	CTYRAG	5 cut(s)	15, 47, 213, 637, 644
SmoI	CTYRAG	5 cut(s)	15, 47, 213, 637, 644
SphI	GCATGC	1 cut(s)	378
Sse9I	AATT	8 cut(s)	361, 386, 523, 631, 686, 704, 758, 877
SseBI	AGGCCT	1 cut(s)	770
SsiI	CCGC	2 cut(s)	433, 972
SspI	AATATT	1 cut(s)	750
SspMI	CTAG	2 cut(s)	776, 1058
SstI	GAGCTC	1 cut(s)	1123
StuI	AGGCCT	1 cut(s)	770
StyD4I	CCNGG	2 cut(s)	533, 586
StyI	CCWWGG	3 cut(s)	550, 792, 861
TaaI	ACNGT	1 cut(s)	725
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	81, 214
TasI	AATT	8 cut(s)	361, 386, 523, 631, 686, 704, 758, 877
TatI	WGTACW	1 cut(s)	1131
TauI	GCSGC	1 cut(s)	974
TfiI	GAWTC	3 cut(s)	43, 557, 854
Tru1I	TTAA	6 cut(s)	251, 522, 876, 902, 980, 1028
Tru9I	TTAA	6 cut(s)	251, 522, 876, 902, 980, 1028
TscAI	CASTG	2 cut(s)	853, 1086
TseI	GCWGC	6 cut(s)	32, 193, 430, 488, 803, 1016
TspDTI	ATGAA	6 cut(s)	134, 333, 857, 870, 942, 1115
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	2 cut(s)	853, 1086
VspI	ATTAAT	2 cut(s)	251, 876
XapI	RAATTY	2 cut(s)	386, 631
XceI	RCATGY	1 cut(s)	378
XhoI	CTCGAG	1 cut(s)	213
XmiI	GTMKAC	2 cut(s)	81, 966
XmnI	GAANNNNTTC	1 cut(s)	955
XspI	CTAG	2 cut(s)	776, 1058
Zsp2I	ATGCAT	1 cut(s)	887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.