Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010496

Physical Location & Seq

Genomic Coordinates Forward (+)

14330382 .. 14333653

Gene Structure 3272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2385 bp

ATGCTGTCTGCGAGGAAATTCAGCCATGGGAGAGCTTCAGTTTGCCCTTGTGTTTTATATGTTGTACAAGCATCGTATGCTAGTTTAAGTTTAGCTGGGTTGTTTGAATCTCAGGTTCGAGCTTATTCAAATGTTGGGTATGTTTCTGGGTCTGTTACTTCTCATTGTTTGGCCAAGTCCATTGTGCAAGATTGTATTTTGAGATTACCCAAAAAGTCTATATCTGAAGTCGGTTCATTTTCGACTATGGCTGGAACAATCTTGGTCCAGGCTCGAGACCCGGCTAAGTTAAATGTGGAGATACAAAATGCAGTTGATGAGCATAGACTAAATGATGCGTGGAAGTATTATGAGCAGTATATGCAGATGGATGGGTTTCCTAGGAAATCTGTTATTAATAGGCTTTTAGCGGGTTTTGTAGAAAGCTCTGATGTTCAGTGGCTTGAGAAGGCTTATGGGTTGGTAGAGCAGGCTATTGGGGAAAGCAAACAGAACTTGTTGGAGAGAAACACGCTGATTTATGTTTCTTTTGGTCTTGCGAGAGCTGGGTTACCAGTTCCTGCATCGACTGTTTTGAGAAGAATGGTAGAAATGGAAGAATACCCTCCTGTTGCTGCTTGGTCTGCTGTCTTGGCCTACATGTCTCAAACAGCTCAAGGGGCTTATGTTGCTGCTGAGTTGATTCTTGAGATAGGTTACCTGTTCCAAGATCACAGGATCGACCCACGTAAGAAGTGTAATGCGCCTTTGATTGCTATGAAGCCTAATACTACTGCTTTCAATATTGCTTTGGCTGGTTGTCTCTTGTTCGGAACAACTAAGAAAGCAGAGCAGCTCCTTGACATGATGCCTCGAGTTGGTATCAAAACGGATGCTAACTTATTGATATTAATGGCACAAATATACGAGAGAAATGGACGGAGAGATGAGCTTAGAAAACTTCAAAGATACGTAGATGAAGCCCATAACCTAAGTGATGTCCAGTTTCGCCAGATCTACAATTGCTTGCTGGCATGCCATTTGAAATTCGGGGATTTAGACGCTGCATCTAACATGGTTTTGGAAATGCGGCGGAAAGCCAAAGAAGCAAGAGGTTCTCTTGCTGTAGCAATGCTGGTATTCGATGCTGCTGGAAGGGGAAACAAATTCCCTCATGGAGTTAATTCTGGATCCTGGCTTTCAAGCCATGGAGAATCATATGCTTATGGAGACAATAGGTTACCCGGTAATCTTGTATTATCTTATGAAGAGTTTTCTAGGGATAGAAATTTCTTGAGACTTGAGGGTGAGGCTAAGGAAGTGCTGGGTGCATTGTTAGCTAAATTGCAGAGCCAAGTTGAATTGGTAACAACTGACCGTGGTATCCTCCAGCCAACTGAAAAAATATTTGCAAAATTAGTCAAGGCCTTTCTGGAAGCAGACAAAACCAAGGATTTGGCAGCCTTTCTTATAAAGGCAGATAAAGAAGATTCCCCAGCTTCCAATGATGATTCAGCCTTGGTTCATGTCATTAATTCATGCATATCGCTTGGATGGTTAGACAAGGCACATGACCTTCTTGATGAAATGTGCTTGGCTGGTGTAAGAACTGGTTCTTCTGTATACACCGCTCTTTTAAAAGCATATTGTGAAGCAAACCAAGCAGGAAATGCAGCATCACTATTAAGAGATGCTCGTAAGGCTGGGATCCAGCTAGATGCAAGCAGTTATGAGGCACTGATCCGATCAAAGGTGCTTCAAAATGATACACAGGGAGCTCTTCATTTGTACACAGAGATGAAAGAGGCTAAGATTCCAAAAGCCGGTCATCAGGAGTTTGAGAGGTTGGTGAAGGAATGTGCAGAGGGTTGTGAACCGAGGTTGATGGTAAAGCTGTTGCAGGAAATAAAGGAAGGGCAGGCGACGTTGGATTCTGCGGTTCATGACTGGAACAACGTAATCCACTTTTTTTGCAGGAAGAGATTGATGCAAGATGCTGAGAAGGCTCTGAAGAAGATGAGAAGTCTGGGGCATGCCCCAAATGCTCAAACTTTCCATTCTATGGTCACTGGGTATGCTGCTGTAGGAGGAAAATATATAGAGGTAACAGAGCTCTGGGGAGAGATGAAGTCACTAGCATATAACACCTCAATGGAATTTGATCAGGAACTCCTGGATTCTGTTCTTTACACTTTCGCGAGGGGTGGGTTTTTCAGTAGAGCAAATGAAGTTTTGGACATGATGGAGAAAGCGAAGATGTTCATCGACAAATACAAGTACCGAACACTCTTCTTGAAGTACCATAAAACACTTCACAAAGGCAAAGCTCCCAAATTCCAGACAGAATCCCAACATAAAAAGAGAGAAGCAGCATTAGCATTTAAGAACTGGATAGGAGTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

794

Amino Acids

88.7

Weight (kDa)

8.63

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_At1g68980	PF25245	92 - 221	4.6e-10	At1g68980, TPR repeats
PPR_2	PF13041	643 - 686	1e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03100
fragaria_vesca	FvH4_5g32870
malus_domestica	MD11G1281500.v1.1
prunus_persica	Prupe.8G237400_v2.0.a1
pyrus_communis	pycom11g24960
rosa_chinensis	RchiOBHm_Chr7g0230741 RchiOBHm_Chr7g0230851
rosa_laevigata	RLG00000001478
rosa_multiflora	Rmu_sc0007883.1_g000006 Rmu_sc0010407.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229770
rosa_rugosa	Rorug07G0262500
rosa_samantha	Rh7AG414200 Rh7AG414900 Rh7BG391400 Rh7CG433100 Rh7CG433600 Rh7DG409800
rosa_wichuraiana	Rw7G034240 Rw7G034270 Rw7G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1451
AccB7I	CCANNNNNTGG	1 cut(s)	2041
AccBSI	CCGCTC	1 cut(s)	1610
AccI	GTMKAC	1 cut(s)	1602
AccII	CGCG	1 cut(s)	2177
AciI	CCGC	5 cut(s)	410, 1069, 1072, 1608, 1916
AclWI	GGATC	6 cut(s)	725, 1164, 1177, 1681, 1694, 1714
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	6 cut(s)	17, 1025, 1145, 1267, 2135, 2312
AcuI	CTGAAG	3 cut(s)	21, 246, 2009
AfaI	GTAC	4 cut(s)	66, 1769, 2258, 2279
AfiI	CCNNNNNNNGG	4 cut(s)	857, 1729, 1802, 2041
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	9 cut(s)	107, 129, 781, 944, 1024, 1182, 1340, 1739, 2275
AjnI	CCWGG	3 cut(s)	267, 1172, 2151
Alw21I	GWGCWC	2 cut(s)	1759, 2094
Alw26I	GTCTC	5 cut(s)	270, 648, 806, 1203, 1270
AlwI	GGATC	6 cut(s)	725, 1164, 1177, 1681, 1694, 1714
AlwNI	CAGNNNCTG	1 cut(s)	560
Ama87I	CYCGRG	2 cut(s)	273, 852
AoxI	GGCC	3 cut(s)	171, 633, 1404
ApeKI	GCWGC	9 cut(s)	614, 671, 832, 1043, 1127, 1439, 1652, 2057, 2348
ApoI	RAATTY	6 cut(s)	17, 1025, 1145, 1267, 2135, 2312
AseI	ATTAAT	3 cut(s)	396, 890, 1512
Asp700I	GAANNNNTTC	2 cut(s)	1591, 2237
AspA2I	CCTAGG	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	745
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	2 cut(s)	281, 1224
AsuHPI	GGTGA	2 cut(s)	1298, 1840
AvaI	CYCGRG	2 cut(s)	273, 852
AvaII	GGWCC	1 cut(s)	265
AvrII	CCTAGG	1 cut(s)	380
BaeI	ACNNNNGTAYC	2 cut(s)	1345, 1378
BalI	TGGCCA	1 cut(s)	173
BamHI	GGATCC	2 cut(s)	1169, 1686
BanII	GRGCYC	2 cut(s)	1759, 2094
Bbv12I	GWGCWC	2 cut(s)	1759, 2094
BbvI	GCAGC	9 cut(s)	601, 658, 844, 1030, 1114, 1451, 1664, 2044, 2360
BccI	CCATC	5 cut(s)	361, 365, 1527, 1858, 2215
BciT130I	CCWGG	3 cut(s)	269, 1174, 2153
BciVI	GTATCC	1 cut(s)	1373
BclI	TGATCA	1 cut(s)	2140
BcnI	CCSGG	2 cut(s)	281, 1224
BcoDI	GTCTC	5 cut(s)	270, 648, 806, 1203, 1270
BfaI	CTAG	5 cut(s)	81, 381, 1257, 1694, 2114
BfmI	CTRYAG	2 cut(s)	1104, 2061
BfuI	GTATCC	1 cut(s)	1373
BglII	AGATCT	1 cut(s)	993
BlnI	CCTAGG	1 cut(s)	380
Bme1390I	CCNGG	5 cut(s)	269, 281, 1174, 1224, 2153
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	2 cut(s)	273, 852
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	1171, 1688
BmrFI	CCNGG	5 cut(s)	269, 281, 1174, 1224, 2153
BmrI	ACTGGG	1 cut(s)	2058
BmuI	ACTGGG	1 cut(s)	2058
BpmI	CTGGAG	1 cut(s)	1352
Bpu10I	CCTNAGC	1 cut(s)	1293
BpuEI	CTTGAG	5 cut(s)	464, 639, 707, 1294, 1301
BpuMI	CCSGG	2 cut(s)	281, 1224
BsaAI	YACGTR	2 cut(s)	728, 952
BsaBI	GATNNNNATC	1 cut(s)	2240
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	7 cut(s)	25, 380, 1186, 1357, 1428, 1497, 1856
Bsc4I	CCNNNNNNNGG	4 cut(s)	857, 1729, 1802, 2041
Bse118I	RCCGGY	1 cut(s)	1802
Bse1I	ACTGG	6 cut(s)	554, 982, 1594, 1931, 2053, 2372
Bse3DI	GCAATG	1 cut(s)	1116
Bse8I	GATNNNNATC	1 cut(s)	2240
BseBI	CCWGG	3 cut(s)	269, 1174, 2153
BseDI	CCNNGG	7 cut(s)	25, 380, 1186, 1357, 1428, 1497, 1856
BseGI	GGATG	3 cut(s)	376, 877, 1538
BseJI	GATNNNNATC	1 cut(s)	2240
BseLI	CCNNNNNNNGG	4 cut(s)	857, 1729, 1802, 2041
BseMI	GCAATG	1 cut(s)	1116
BseMII	CTCAG	3 cut(s)	125, 666, 1968
BseNI	ACTGG	6 cut(s)	554, 982, 1594, 1931, 2053, 2372
BseXI	GCAGC	9 cut(s)	601, 658, 844, 1030, 1114, 1451, 1664, 2044, 2360
BseYI	CCCAGC	5 cut(s)	95, 545, 1303, 1474, 1682
BsgI	GTGCAG	1 cut(s)	1860
Bsh1236I	CGCG	1 cut(s)	2177
BshFI	GGCC	3 cut(s)	173, 635, 1406
BsiHKAI	GWGCWC	2 cut(s)	1759, 2094
BsiHKCI	CYCGRG	2 cut(s)	273, 852
BsiSI	CCGG	3 cut(s)	281, 1224, 1803
BslI	CCNNNNNNNGG	4 cut(s)	857, 1729, 1802, 2041
BsmAI	GTCTC	5 cut(s)	270, 648, 806, 1203, 1270
BsnI	GGCC	3 cut(s)	173, 635, 1406
Bso31I	GGTCTC	1 cut(s)	270
BsoBI	CYCGRG	2 cut(s)	273, 852
Bsp1286I	GDGCHC	2 cut(s)	1759, 2094
Bsp1407I	TGTACA	2 cut(s)	64, 1767
Bsp143I	GATC	8 cut(s)	709, 717, 993, 1169, 1686, 1719, 1724, 2140
Bsp19I	CCATGG	2 cut(s)	25, 1186
Bsp68I	TCGCGA	1 cut(s)	2177
BspACI	CCGC	5 cut(s)	410, 1069, 1072, 1608, 1916
BspANI	GGCC	3 cut(s)	173, 635, 1406
BspCNI	CTCAG	3 cut(s)	124, 667, 1969
BspFNI	CGCG	1 cut(s)	2177
BspHI	TCATGA	1 cut(s)	1921
BspLI	GGNNCC	2 cut(s)	1171, 1688
BspPI	GGATC	6 cut(s)	725, 1164, 1177, 1681, 1694, 1714
BspQI	GCTCTTC	1 cut(s)	1764
BspTNI	GGTCTC	1 cut(s)	270
BsrBI	CCGCTC	1 cut(s)	1610
BsrDI	GCAATG	1 cut(s)	1116
BsrFI	RCCGGY	1 cut(s)	1802
BsrGI	TGTACA	2 cut(s)	64, 1767
BsrI	ACTGG	6 cut(s)	554, 982, 1594, 1931, 2053, 2372
BssAI	RCCGGY	1 cut(s)	1802
BssECI	CCNNGG	7 cut(s)	25, 380, 1186, 1357, 1428, 1497, 1856
BssMI	GATC	8 cut(s)	709, 717, 993, 1169, 1686, 1719, 1724, 2140
BssNAI	GTATAC	1 cut(s)	1603
BssT1I	CCWWGG	5 cut(s)	25, 380, 1186, 1428, 1497
Bst1107I	GTATAC	1 cut(s)	1603
Bst2UI	CCWGG	3 cut(s)	269, 1174, 2153
Bst4CI	ACNGT	2 cut(s)	571, 1358
Bst6I	CTCTTC	4 cut(s)	1242, 1764, 1952, 2273
BstAPI	GCANNNNNTGC	3 cut(s)	77, 361, 1649
BstAUI	TGTACA	2 cut(s)	64, 1767
BstBAI	YACGTR	2 cut(s)	728, 952
BstC8I	GCNNGC	7 cut(s)	471, 1007, 1011, 1015, 1702, 1899, 2013
BstDEI	CTNAG	9 cut(s)	111, 285, 675, 819, 932, 971, 1293, 1788, 1977
BstDSI	CCRYGG	3 cut(s)	25, 1186, 1357
BstEII	GGTNACC	3 cut(s)	549, 695, 1218
BstF5I	GGATG	3 cut(s)	376, 877, 1538
BstFNI	CGCG	1 cut(s)	2177
BstHHI	GCGC	1 cut(s)	745
BstKTI	GATC	8 cut(s)	712, 720, 996, 1172, 1689, 1722, 1727, 2143
BstMAI	GTCTC	5 cut(s)	270, 648, 806, 1203, 1270
BstMBI	GATC	8 cut(s)	709, 717, 993, 1169, 1686, 1719, 1724, 2140
BstNI	CCWGG	3 cut(s)	269, 1174, 2153
BstNSI	RCATGY	3 cut(s)	643, 1017, 2015
BstPI	GGTNACC	3 cut(s)	549, 695, 1218
BstSCI	CCNGG	5 cut(s)	267, 279, 1172, 1222, 2151
BstSFI	CTRYAG	2 cut(s)	1104, 2061
BstSNI	TACGTA	1 cut(s)	952
BstUI	CGCG	1 cut(s)	2177
BstV1I	GCAGC	9 cut(s)	601, 658, 844, 1030, 1114, 1451, 1664, 2044, 2360
BstX2I	RGATCY	3 cut(s)	993, 1169, 1686
BstXI	CCANNNNNNTGG	1 cut(s)	1435
BstYI	RGATCY	3 cut(s)	993, 1169, 1686
BstZ17I	GTATAC	1 cut(s)	1603
BsuI	GTATCC	1 cut(s)	1373
BsuRI	GGCC	3 cut(s)	173, 635, 1406
BtgI	CCRYGG	3 cut(s)	25, 1186, 1357
BtsCI	GGATG	3 cut(s)	376, 877, 1538
BtsIMutI	CAGTG	3 cut(s)	443, 1715, 2046
BtuMI	TCGCGA	1 cut(s)	2177
Cac8I	GCNNGC	7 cut(s)	471, 1007, 1011, 1015, 1702, 1899, 2013
CaiI	CAGNNNCTG	1 cut(s)	560
CciI	TCATGA	1 cut(s)	1921
CfoI	GCGC	1 cut(s)	745
Cfr10I	RCCGGY	1 cut(s)	1802
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	1 cut(s)	1049
Csp6I	GTAC	4 cut(s)	65, 1768, 2257, 2278
CspCI	CAANNNNNGTGG	2 cut(s)	1931, 1966
CviQI	GTAC	4 cut(s)	65, 1768, 2257, 2278
DdeI	CTNAG	9 cut(s)	111, 285, 675, 819, 932, 971, 1293, 1788, 1977
DpnI	GATC	8 cut(s)	711, 719, 995, 1171, 1688, 1721, 1726, 2142
DpnII	GATC	8 cut(s)	709, 717, 993, 1169, 1686, 1719, 1724, 2140
DraI	TTTAAA	1 cut(s)	1617
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	4 cut(s)	1242, 1764, 1952, 2273
EarI	CTCTTC	4 cut(s)	1242, 1764, 1952, 2273
EciI	GGCGGA	1 cut(s)	1087
Ecl136II	GAGCTC	2 cut(s)	1757, 2092
Eco105I	TACGTA	1 cut(s)	952
Eco130I	CCWWGG	5 cut(s)	25, 380, 1186, 1428, 1497
Eco147I	AGGCCT	1 cut(s)	1406
Eco24I	GRGCYC	2 cut(s)	1759, 2094
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	2 cut(s)	1757, 2092
Eco57I	CTGAAG	3 cut(s)	21, 246, 2009
Eco88I	CYCGRG	2 cut(s)	273, 852
Eco91I	GGTNACC	3 cut(s)	549, 695, 1218
EcoICRI	GAGCTC	2 cut(s)	1757, 2092
EcoO65I	GGTNACC	3 cut(s)	549, 695, 1218
EcoRII	CCWGG	3 cut(s)	267, 1172, 2151
EcoT14I	CCWWGG	5 cut(s)	25, 380, 1186, 1428, 1497
EcoT22I	ATGCAT	1 cut(s)	1523
EcoT38I	GRGCYC	2 cut(s)	1759, 2094
ErhI	CCWWGG	5 cut(s)	25, 380, 1186, 1428, 1497
FauI	CCCGC	1 cut(s)	403
FauNDI	CATATG	1 cut(s)	1198
FbaI	TGATCA	1 cut(s)	2140
FblI	GTMKAC	1 cut(s)	1602
FokI	GGATG	3 cut(s)	383, 884, 1545
FriOI	GRGCYC	2 cut(s)	1759, 2094
FspBI	CTAG	5 cut(s)	81, 381, 1257, 1694, 2114
GlaI	GCGC	1 cut(s)	744
GsaI	CCCAGC	5 cut(s)	99, 549, 1307, 1478, 1686
GsuI	CTGGAG	1 cut(s)	1352
HaeIII	GGCC	3 cut(s)	173, 635, 1406
HapII	CCGG	3 cut(s)	281, 1224, 1803
HgaI	GACGC	1 cut(s)	1049
HhaI	GCGC	1 cut(s)	745
Hin6I	GCGC	1 cut(s)	743
HinP1I	GCGC	1 cut(s)	743
HinfI	GANTC	9 cut(s)	107, 682, 1193, 1469, 1490, 1792, 1910, 2156, 2324
HpaII	CCGG	3 cut(s)	281, 1224, 1803
HphI	GGTGA	2 cut(s)	1298, 1840
Hpy166II	GTNNAC	3 cut(s)	1603, 1770, 1853
Hpy188I	TCNGA	5 cut(s)	226, 430, 812, 1724, 1989
Hpy8I	GTNNAC	3 cut(s)	1603, 1770, 1853
Hpy99I	CGWCG	1 cut(s)	1906
HpyAV	CCTTC	6 cut(s)	442, 1128, 1565, 1825, 1886, 1975
HpyCH4III	ACNGT	2 cut(s)	571, 1358
HpyCH4IV	ACGT	4 cut(s)	727, 951, 1904, 1935
HpyF3I	CTNAG	9 cut(s)	111, 285, 675, 819, 932, 971, 1293, 1788, 1977
HpySE526I	ACGT	4 cut(s)	727, 951, 1904, 1935
HspAI	GCGC	1 cut(s)	743
Ksp22I	TGATCA	1 cut(s)	2140
Kzo9I	GATC	8 cut(s)	709, 717, 993, 1169, 1686, 1719, 1724, 2140
LguI	GCTCTTC	1 cut(s)	1764
LmnI	GCTCC	3 cut(s)	840, 1754, 2311
Lsp1109I	GCAGC	9 cut(s)	601, 658, 844, 1030, 1114, 1451, 1664, 2044, 2360
MaeI	CTAG	5 cut(s)	81, 381, 1257, 1694, 2114
MaeII	ACGT	4 cut(s)	727, 951, 1904, 1935
MaeIII	GTNAC	8 cut(s)	154, 549, 695, 1218, 1345, 2044, 2083, 2109
MalI	GATC	8 cut(s)	711, 719, 995, 1171, 1688, 1721, 1726, 2142
MbiI	CCGCTC	1 cut(s)	1610
MboI	GATC	8 cut(s)	709, 717, 993, 1169, 1686, 1719, 1724, 2140
MfeI	CAATTG	1 cut(s)	1000
MflI	RGATCY	3 cut(s)	993, 1169, 1686
MhlI	GDGCHC	2 cut(s)	1759, 2094
MlsI	TGGCCA	1 cut(s)	173
MluNI	TGGCCA	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	480, 1887
Mox20I	TGGCCA	1 cut(s)	173
Mph1103I	ATGCAT	1 cut(s)	1523
MroXI	GAANNNNTTC	2 cut(s)	1591, 2237
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	9 cut(s)	86, 290, 396, 890, 1161, 1512, 1616, 1664, 2361
MslI	CAYNNNNRTG	2 cut(s)	1775, 2129
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	3 cut(s)	281, 1224, 1803
MspR9I	CCNGG	5 cut(s)	269, 281, 1174, 1224, 2153
MunI	CAATTG	1 cut(s)	1000
MvaI	CCWGG	3 cut(s)	269, 1174, 2153
MvnI	CGCG	1 cut(s)	2177
NciI	CCSGG	2 cut(s)	281, 1224
NcoI	CCATGG	2 cut(s)	25, 1186
NdeI	CATATG	1 cut(s)	1198
NdeII	GATC	8 cut(s)	709, 717, 993, 1169, 1686, 1719, 1724, 2140
NlaIV	GGNNCC	2 cut(s)	1171, 1688
NmuCI	GTSAC	2 cut(s)	2044, 2109
NruI	TCGCGA	1 cut(s)	2177
NsiI	ATGCAT	1 cut(s)	1523
NspI	RCATGY	3 cut(s)	643, 1017, 2015
PaeI	GCATGC	2 cut(s)	1017, 2015
PaeR7I	CTCGAG	2 cut(s)	273, 852
PagI	TCATGA	1 cut(s)	1921
PceI	AGGCCT	1 cut(s)	1406
PciI	ACATGT	1 cut(s)	639
PciSI	GCTCTTC	1 cut(s)	1764
PdmI	GAANNNNTTC	2 cut(s)	1591, 2237
PfeI	GAWTC	9 cut(s)	107, 682, 1193, 1469, 1490, 1792, 1910, 2156, 2324
PflMI	CCANNNNNTGG	1 cut(s)	2041
PfoI	TCCNGGA	1 cut(s)	2151
Ppu21I	YACGTR	2 cut(s)	728, 952
PscI	ACATGT	1 cut(s)	639
PshBI	ATTAAT	3 cut(s)	396, 890, 1512
PsiI	TTATAA	1 cut(s)	1451
Psp124BI	GAGCTC	2 cut(s)	1759, 2094
Psp6I	CCWGG	3 cut(s)	267, 1172, 2151
PspEI	GGTNACC	3 cut(s)	549, 695, 1218
PspFI	CCCAGC	5 cut(s)	95, 545, 1303, 1474, 1682
PspGI	CCWGG	3 cut(s)	267, 1172, 2151
PspN4I	GGNNCC	2 cut(s)	1171, 1688
PspPI	GGNCC	1 cut(s)	265
PspXI	VCTCGAGB	1 cut(s)	852
PstNI	CAGNNNCTG	1 cut(s)	560
PsuI	RGATCY	3 cut(s)	993, 1169, 1686
RruI	TCGCGA	1 cut(s)	2177
RsaI	GTAC	4 cut(s)	66, 1769, 2258, 2279
RsaNI	GTAC	4 cut(s)	65, 1768, 2257, 2278
RseI	CAYNNNNRTG	2 cut(s)	1775, 2129
SacI	GAGCTC	2 cut(s)	1759, 2094
SapI	GCTCTTC	1 cut(s)	1764
SaqAI	TTAA	9 cut(s)	86, 290, 396, 890, 1161, 1512, 1616, 1664, 2361
Sau3AI	GATC	8 cut(s)	709, 717, 993, 1169, 1686, 1719, 1724, 2140
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	5 cut(s)	269, 281, 1174, 1224, 2153
SduI	GDGCHC	2 cut(s)	1759, 2094
SfcI	CTRYAG	2 cut(s)	1104, 2061
Sfr274I	CTCGAG	2 cut(s)	273, 852
SinI	GGWCC	1 cut(s)	265
SlaI	CTCGAG	2 cut(s)	273, 852
SmiMI	CAYNNNNRTG	2 cut(s)	1775, 2129
SmlI	CTYRAG	7 cut(s)	273, 443, 654, 686, 852, 1273, 1280
SmoI	CTYRAG	7 cut(s)	273, 443, 654, 686, 852, 1273, 1280
SnaBI	TACGTA	1 cut(s)	952
SphI	GCATGC	2 cut(s)	1017, 2015
SseBI	AGGCCT	1 cut(s)	1406
SsiI	CCGC	5 cut(s)	410, 1069, 1072, 1608, 1916
SspI	AATATT	2 cut(s)	784, 1386
SspMI	CTAG	5 cut(s)	81, 381, 1257, 1694, 2114
SstI	GAGCTC	2 cut(s)	1759, 2094
StuI	AGGCCT	1 cut(s)	1406
StyD4I	CCNGG	5 cut(s)	267, 279, 1172, 1222, 2151
StyI	CCWWGG	5 cut(s)	25, 380, 1186, 1428, 1497
TaaI	ACNGT	2 cut(s)	571, 1358
TaiI	ACGT	4 cut(s)	730, 954, 1907, 1938
TaqI	TCGA	8 cut(s)	118, 242, 274, 566, 720, 853, 1122, 2244
TatI	WGTACW	2 cut(s)	64, 1767
TauI	GCSGC	1 cut(s)	1072
TfiI	GAWTC	9 cut(s)	107, 682, 1193, 1469, 1490, 1792, 1910, 2156, 2324
Tru1I	TTAA	9 cut(s)	86, 290, 396, 890, 1161, 1512, 1616, 1664, 2361
Tru9I	TTAA	9 cut(s)	86, 290, 396, 890, 1161, 1512, 1616, 1664, 2361
TscAI	CASTG	3 cut(s)	443, 1722, 2053
TseFI	GTSAC	2 cut(s)	2044, 2109
TseI	GCWGC	9 cut(s)	614, 671, 832, 1043, 1127, 1439, 1652, 2057, 2348
Tsp45I	GTSAC	2 cut(s)	2044, 2109
TspGWI	ACGGA	2 cut(s)	884, 934
TspRI	CASTG	3 cut(s)	443, 1722, 2053
Van91I	CCANNNNNTGG	1 cut(s)	2041
VpaK11BI	GGWCC	1 cut(s)	265
VspI	ATTAAT	3 cut(s)	396, 890, 1512
XapI	RAATTY	6 cut(s)	17, 1025, 1145, 1267, 2135, 2312
XceI	RCATGY	3 cut(s)	643, 1017, 2015
XhoI	CTCGAG	2 cut(s)	273, 852
XmaJI	CCTAGG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	1602
XmnI	GAANNNNTTC	2 cut(s)	1591, 2237
XspI	CTAG	5 cut(s)	81, 381, 1257, 1694, 2114
Zsp2I	ATGCAT	1 cut(s)	1523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.