Rw7G034240

Pentatricopeptide repeat-containing protein At1g03100

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
50674357 .. 50676152
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G034240.1

Sequence Viewer

Length: 1737 bp
ATGGAAGAATACCCTCCTGTTGCTGCTTGGTCTGCTGTCTTGGCCTACATGTCTCAAACAGCTCAAGGGGCTTATGTTGCTGCTGAGTTGATTCTTGAGATAGGTTACTTGTTCCAAGATCACAGGATCGACCCACGTAAGAAGTGTAATGCACCTCTGATTGCTATGAAGCCTAATACTACTGCTTTCAACATTGCTTTGGCTGGTTGTCTCTTGTTTGGAACAACTAAGAAAGCAGAGCAGCTCCTTGACATGATGCCTCGAGTTGGTATCAAAACGGATGCTAACTTATTGATATTAATGGCACAAATATACGAGAGAAATGGACGGAGAGATGAGCTTAGAAAACTTCAAAGATACGTAGATGAAGCCCATAACCTAAGTGATGTCCAGTTTCGCCAGTTCTACAATTGCTTGCTGGCATGCCATTTGAAATTTGGGGATTTAGACTCTGCATCTAACATGGTTTTGGAAATGCTGCGGAAAGCAAAAGAAGCAAGAGGTTCTCTTGCAGTAGCAACTCTGGAATTTGATGCTGCTGGAAGGGGAAGCAAGTTCCCTCATGGAGTTAATTCTGGATCCTGGCATTATTCAAGCCATGGAGAATCATATGCTTATGGAAACAATAGGTTACCTGGTAATCTTGTATTATCTTACGAAGAGTTTTCAAGGGATAGAAATTTCTTGAGACTTGAGGGTGAGGCTAAGGAAGTGCTGGGTGCATTGTTAGCTAAATTGCAGAGCCAAGTTGAATTGGCCTTTCTAGAAGCAGACAAAACCAAGGATTTGGCTGCCTTTCTTATAAAGGCAGATAAAGAAGATTCCCCAGCTTCCAATGATGACTCAGCCTTGGTTCATGTCATTAGTTCATGCATATCGCTTGGATGGTTAGACAAGGCACATGACCTTCTTGATGAAATGTGCTTGGCTGGTGTAAGAACTGGTTCTTCTGTATACGCTGCTCTTTTAAAAGCATATTGTGAAGCAAACCAAGCCGGAAATGCAGCATCACTATTAAGAGATGCTCGTAAGGCTGGTATCCAGCTAGATGCAAGCAGTTATGAGGCACTGATCCGATCGAAGGTGCTTCAAAATGATACACAGGGAGCTCTTCATTTGTACACAGAGATGAAAGAGGCTAAGATTCCAAAAGCCGGTCATCAGGAGTTTGAGAGGTTGGTGAAGGAATGTGCAGAGGGTTGTGAACCGAGGTTGATGGTAAAGCTGTTGCAGGAAATAAAGGAAGGGCAGGTGACGTTGGATTCTGCGGTTCATGACTGGAACAATGTAATCCACTTTTTCTGCAGGAAGAGATTGATGCAAGATGCTGAGAAGGCTCTGAAAAAGATGAGAAGTCTGGGGCATGCCCCAAATGCTCAAACTTTCCATTCTATGGTTACTGGGTATGCTGCTGTAGGAGGAAAGTATATAGAGGTAACAGAGCTGTGGGGAGAGATGAAGTCTCTAGCTTATAACACCTCAATGAAATTTGATCAGGAACTCCTGGATTCTGTTCTTTACACTTTCGTTAGGGGTGGGTTTTTCAGTAGAGCAAATGAAGTCTTGGACATGATGGAGAAAGCGAAGATGTTCATTGACAAGTACAAGTACAGAACACTCTTCTTGAAGTACCATAAAACACTTCACAAAGGCAAAGCTCCCAAATTCCAGACAGAATCCCAACATAAAAAGAGAGAAGCAGCATTAGCATTTAAGAACTGGATAGGAGTGTGCTGA

Protein Analysis

578

Amino Acids

64.87

Weight (kDa)

8.3

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 427 - 470 6.7e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 803, 1473
AarI CACCTGC 1 cut(s) 1240
Acc36I ACCTGC 1 cut(s) 1240
AccB7I CCANNNNNTGG 1 cut(s) 1393
AccI GTMKAC 1 cut(s) 954
AciI CCGC 2 cut(s) 481, 1268
AclWI GGATC 4 cut(s) 134, 573, 586, 1066
AcsI RAATTY 5 cut(s) 434, 527, 679, 1487, 1664
AfaI GTAC 4 cut(s) 1121, 1604, 1610, 1631
AfiI CCNNNNNNNGG 4 cut(s) 266, 1081, 1154, 1393
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 8 cut(s) 190, 353, 433, 594, 669, 752, 1091, 1627
AjnI CCWGG 3 cut(s) 581, 634, 1503
Alw21I GWGCWC 1 cut(s) 1111
Alw26I GTCTC 4 cut(s) 57, 215, 682, 1467
AlwI GGATC 4 cut(s) 134, 573, 586, 1066
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 2 cut(s) 42, 756
ApoI RAATTY 5 cut(s) 434, 527, 679, 1487, 1664
AseI ATTAAT 1 cut(s) 299
Asp700I GAANNNNTTC 2 cut(s) 943, 1589
AsuHPI GGTGA 3 cut(s) 710, 1192, 1264
AvaI CYCGRG 1 cut(s) 261
BamHI GGATCC 1 cut(s) 578
BanII GRGCYC 1 cut(s) 1111
Bbv12I GWGCWC 1 cut(s) 1111
BccI CCATC 3 cut(s) 879, 1210, 1567
BciT130I CCWGG 3 cut(s) 583, 636, 1505
BciVI GTATCC 1 cut(s) 1049
BclI TGATCA 1 cut(s) 1492
BcoDI GTCTC 4 cut(s) 57, 215, 682, 1467
BfaI CTAG 3 cut(s) 764, 1046, 1466
BfmI CTRYAG 2 cut(s) 1303, 1413
BfuAI ACCTGC 1 cut(s) 1240
BfuI GTATCC 1 cut(s) 1049
Bme1390I CCNGG 3 cut(s) 583, 636, 1505
BmeT110I CYCGRG 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 580
BmrFI CCNGG 3 cut(s) 583, 636, 1505
BmrI ACTGGG 1 cut(s) 1410
BmsI GCATC 9 cut(s) 246, 271, 464, 523, 1012, 1016, 1039, 1308, 1315
BmuI ACTGGG 1 cut(s) 1410
Bpu10I CCTNAGC 1 cut(s) 705
BpuEI CTTGAG 4 cut(s) 48, 116, 706, 713
BsaAI YACGTR 2 cut(s) 137, 361
BsaJI CCNNGG 4 cut(s) 598, 780, 849, 1208
Bsc4I CCNNNNNNNGG 4 cut(s) 266, 1081, 1154, 1393
Bse118I RCCGGY 1 cut(s) 1154
Bse1I ACTGG 6 cut(s) 391, 400, 946, 1283, 1405, 1724
Bse3DI GCAATG 1 cut(s) 192
BseBI CCWGG 3 cut(s) 583, 636, 1505
BseDI CCNNGG 4 cut(s) 598, 780, 849, 1208
BseGI GGATG 2 cut(s) 286, 890
BseLI CCNNNNNNNGG 4 cut(s) 266, 1081, 1154, 1393
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 3 cut(s) 75, 858, 1320
BseNI ACTGG 6 cut(s) 391, 400, 946, 1283, 1405, 1724
BseYI CCCAGC 2 cut(s) 715, 826
BsgI GTGCAG 1 cut(s) 1212
Bsh1285I CGRYCG 1 cut(s) 1079
BshFI GGCC 2 cut(s) 44, 758
BsiEI CGRYCG 1 cut(s) 1079
BsiHKAI GWGCWC 1 cut(s) 1111
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 996, 1155
BslI CCNNNNNNNGG 4 cut(s) 266, 1081, 1154, 1393
BsmAI GTCTC 4 cut(s) 57, 215, 682, 1467
BsnI GGCC 2 cut(s) 44, 758
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 1111
Bsp1407I TGTACA 1 cut(s) 1119
Bsp143I GATC 6 cut(s) 118, 126, 578, 1071, 1076, 1492
Bsp19I CCATGG 1 cut(s) 598
BspACI CCGC 2 cut(s) 481, 1268
BspANI GGCC 2 cut(s) 44, 758
BspCNI CTCAG 3 cut(s) 76, 857, 1321
BspHI TCATGA 1 cut(s) 1273
BspLI GGNNCC 1 cut(s) 580
BspMAI CTGCAG 1 cut(s) 1307
BspMI ACCTGC 1 cut(s) 1240
BspPI GGATC 4 cut(s) 134, 573, 586, 1066
BspQI GCTCTTC 1 cut(s) 1116
BsrDI GCAATG 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 1154
BsrGI TGTACA 1 cut(s) 1119
BsrI ACTGG 6 cut(s) 391, 400, 946, 1283, 1405, 1724
BssAI RCCGGY 1 cut(s) 1154
BssECI CCNNGG 4 cut(s) 598, 780, 849, 1208
BssMI GATC 6 cut(s) 118, 126, 578, 1071, 1076, 1492
BssNAI GTATAC 1 cut(s) 955
BssT1I CCWWGG 3 cut(s) 598, 780, 849
Bst1107I GTATAC 1 cut(s) 955
Bst2UI CCWGG 3 cut(s) 583, 636, 1505
Bst6I CTCTTC 4 cut(s) 654, 1116, 1304, 1625
BstAUI TGTACA 1 cut(s) 1119
BstBAI YACGTR 2 cut(s) 137, 361
BstC8I GCNNGC 5 cut(s) 416, 420, 424, 1054, 1365
BstDEI CTNAG 8 cut(s) 84, 228, 341, 380, 705, 844, 1140, 1329
BstDSI CCRYGG 1 cut(s) 598
BstEII GGTNACC 1 cut(s) 630
BstF5I GGATG 2 cut(s) 286, 890
BstKTI GATC 6 cut(s) 121, 129, 581, 1074, 1079, 1495
BstMAI GTCTC 4 cut(s) 57, 215, 682, 1467
BstMBI GATC 6 cut(s) 118, 126, 578, 1071, 1076, 1492
BstMCI CGRYCG 1 cut(s) 1079
BstNI CCWGG 3 cut(s) 583, 636, 1505
BstNSI RCATGY 3 cut(s) 52, 426, 1367
BstPI GGTNACC 1 cut(s) 630
BstSCI CCNGG 3 cut(s) 581, 634, 1503
BstSFI CTRYAG 2 cut(s) 1303, 1413
BstSNI TACGTA 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 578
BstXI CCANNNNNNTGG 1 cut(s) 787
BstYI RGATCY 1 cut(s) 578
BstZ17I GTATAC 1 cut(s) 955
BsuI GTATCC 1 cut(s) 1049
BsuRI GGCC 2 cut(s) 44, 758
BtgI CCRYGG 1 cut(s) 598
BtsCI GGATG 2 cut(s) 286, 890
BtsIMutI CAGTG 1 cut(s) 1067
BveI ACCTGC 1 cut(s) 1240
Cac8I GCNNGC 5 cut(s) 416, 420, 424, 1054, 1365
CciI TCATGA 1 cut(s) 1273
Cfr10I RCCGGY 1 cut(s) 1154
CsiI ACCWGGT 1 cut(s) 634
Csp6I GTAC 4 cut(s) 1120, 1603, 1609, 1630
CviQI GTAC 4 cut(s) 1120, 1603, 1609, 1630
DdeI CTNAG 8 cut(s) 84, 228, 341, 380, 705, 844, 1140, 1329
DpnI GATC 6 cut(s) 120, 128, 580, 1073, 1078, 1494
DpnII GATC 6 cut(s) 118, 126, 578, 1071, 1076, 1492
DraI TTTAAA 1 cut(s) 969
Eam1104I CTCTTC 4 cut(s) 654, 1116, 1304, 1625
EarI CTCTTC 4 cut(s) 654, 1116, 1304, 1625
Ecl136II GAGCTC 1 cut(s) 1109
Eco105I TACGTA 1 cut(s) 361
Eco130I CCWWGG 3 cut(s) 598, 780, 849
Eco24I GRGCYC 1 cut(s) 1111
Eco53kI GAGCTC 1 cut(s) 1109
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 630
EcoICRI GAGCTC 1 cut(s) 1109
EcoO65I GGTNACC 1 cut(s) 630
EcoRII CCWGG 3 cut(s) 581, 634, 1503
EcoT14I CCWWGG 3 cut(s) 598, 780, 849
EcoT22I ATGCAT 1 cut(s) 875
EcoT38I GRGCYC 1 cut(s) 1111
ErhI CCWWGG 3 cut(s) 598, 780, 849
FauNDI CATATG 1 cut(s) 610
FbaI TGATCA 1 cut(s) 1492
FblI GTMKAC 1 cut(s) 954
FokI GGATG 2 cut(s) 293, 897
FriOI GRGCYC 1 cut(s) 1111
FspBI CTAG 3 cut(s) 764, 1046, 1466
GsaI CCCAGC 2 cut(s) 719, 830
HaeIII GGCC 2 cut(s) 44, 758
HapII CCGG 2 cut(s) 996, 1155
HinfI GANTC 9 cut(s) 91, 449, 605, 821, 842, 1144, 1262, 1508, 1676
HpaII CCGG 2 cut(s) 996, 1155
HphI GGTGA 3 cut(s) 710, 1192, 1264
Hpy166II GTNNAC 3 cut(s) 955, 1122, 1205
Hpy188I TCNGA 3 cut(s) 159, 1076, 1341
Hpy8I GTNNAC 3 cut(s) 955, 1122, 1205
HpyAV CCTTC 6 cut(s) 537, 917, 1075, 1177, 1238, 1327
HpyCH4IV ACGT 3 cut(s) 136, 360, 1256
HpyF3I CTNAG 8 cut(s) 84, 228, 341, 380, 705, 844, 1140, 1329
HpySE526I ACGT 3 cut(s) 136, 360, 1256
Ksp22I TGATCA 1 cut(s) 1492
Kzo9I GATC 6 cut(s) 118, 126, 578, 1071, 1076, 1492
LguI GCTCTTC 1 cut(s) 1116
LmnI GCTCC 3 cut(s) 249, 1106, 1663
LweI GCATC 9 cut(s) 246, 271, 464, 523, 1012, 1016, 1039, 1308, 1315
MabI ACCWGGT 1 cut(s) 634
MaeI CTAG 3 cut(s) 764, 1046, 1466
MaeII ACGT 3 cut(s) 136, 360, 1256
MaeIII GTNAC 5 cut(s) 104, 630, 1252, 1396, 1435
MalI GATC 6 cut(s) 120, 128, 580, 1073, 1078, 1494
MboI GATC 6 cut(s) 118, 126, 578, 1071, 1076, 1492
MboII GAAGA 8 cut(s) 17, 671, 830, 939, 1103, 1321, 1597, 1612
MfeI CAATTG 1 cut(s) 409
MflI RGATCY 1 cut(s) 578
MhlI GDGCHC 1 cut(s) 1111
MluCI AATT 9 cut(s) 409, 434, 527, 571, 679, 734, 752, 1487, 1664
MlyI GAGTC 2 cut(s) 443, 836
MmeI TCCRAC 1 cut(s) 1239
Mph1103I ATGCAT 1 cut(s) 875
MroXI GAANNNNTTC 2 cut(s) 943, 1589
MseI TTAA 5 cut(s) 299, 570, 968, 1016, 1713
MslI CAYNNNNRTG 2 cut(s) 1127, 1481
MspI CCGG 2 cut(s) 996, 1155
MspR9I CCNGG 3 cut(s) 583, 636, 1505
MunI CAATTG 1 cut(s) 409
MvaI CCWGG 3 cut(s) 583, 636, 1505
NcoI CCATGG 1 cut(s) 598
NdeI CATATG 1 cut(s) 610
NdeII GATC 6 cut(s) 118, 126, 578, 1071, 1076, 1492
NlaIV GGNNCC 1 cut(s) 580
NmuCI GTSAC 1 cut(s) 1252
NsiI ATGCAT 1 cut(s) 875
NspI RCATGY 3 cut(s) 52, 426, 1367
PaeI GCATGC 2 cut(s) 426, 1367
PaeR7I CTCGAG 1 cut(s) 261
PagI TCATGA 1 cut(s) 1273
PaqCI CACCTGC 1 cut(s) 1240
PciI ACATGT 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 1116
PdmI GAANNNNTTC 2 cut(s) 943, 1589
PfeI GAWTC 7 cut(s) 91, 605, 821, 1144, 1262, 1508, 1676
PflMI CCANNNNNTGG 1 cut(s) 1393
PfoI TCCNGGA 1 cut(s) 1503
Ple19I CGATCG 1 cut(s) 1079
PleI GAGTC 2 cut(s) 443, 836
PpsI GAGTC 2 cut(s) 443, 836
Ppu21I YACGTR 2 cut(s) 137, 361
PscI ACATGT 1 cut(s) 48
PshBI ATTAAT 1 cut(s) 299
PsiI TTATAA 2 cut(s) 803, 1473
Psp124BI GAGCTC 1 cut(s) 1111
Psp6I CCWGG 3 cut(s) 581, 634, 1503
PspEI GGTNACC 1 cut(s) 630
PspFI CCCAGC 2 cut(s) 715, 826
PspGI CCWGG 3 cut(s) 581, 634, 1503
PspN4I GGNNCC 1 cut(s) 580
PspXI VCTCGAGB 1 cut(s) 261
PstI CTGCAG 1 cut(s) 1307
PsuI RGATCY 1 cut(s) 578
PvuI CGATCG 1 cut(s) 1079
RsaI GTAC 4 cut(s) 1121, 1604, 1610, 1631
RsaNI GTAC 4 cut(s) 1120, 1603, 1609, 1630
RseI CAYNNNNRTG 2 cut(s) 1127, 1481
SacI GAGCTC 1 cut(s) 1111
SapI GCTCTTC 1 cut(s) 1116
SaqAI TTAA 5 cut(s) 299, 570, 968, 1016, 1713
Sau3AI GATC 6 cut(s) 118, 126, 578, 1071, 1076, 1492
SchI GAGTC 2 cut(s) 443, 836
ScrFI CCNGG 3 cut(s) 583, 636, 1505
SduI GDGCHC 1 cut(s) 1111
SexAI ACCWGGT 1 cut(s) 634
SfaNI GCATC 9 cut(s) 246, 271, 464, 523, 1012, 1016, 1039, 1308, 1315
SfcI CTRYAG 2 cut(s) 1303, 1413
Sfr274I CTCGAG 1 cut(s) 261
SlaI CTCGAG 1 cut(s) 261
SmiMI CAYNNNNRTG 2 cut(s) 1127, 1481
SmlI CTYRAG 5 cut(s) 63, 95, 261, 685, 692
SmoI CTYRAG 5 cut(s) 63, 95, 261, 685, 692
SnaBI TACGTA 1 cut(s) 361
SphI GCATGC 2 cut(s) 426, 1367
Sse9I AATT 9 cut(s) 409, 434, 527, 571, 679, 734, 752, 1487, 1664
SsiI CCGC 2 cut(s) 481, 1268
SspMI CTAG 3 cut(s) 764, 1046, 1466
SstI GAGCTC 1 cut(s) 1111
StyD4I CCNGG 3 cut(s) 581, 634, 1503
StyI CCWWGG 3 cut(s) 598, 780, 849
TaiI ACGT 3 cut(s) 139, 363, 1259
TaqI TCGA 3 cut(s) 129, 262, 1079
TasI AATT 9 cut(s) 409, 434, 527, 571, 679, 734, 752, 1487, 1664
TatI WGTACW 3 cut(s) 1119, 1602, 1608
TfiI GAWTC 7 cut(s) 91, 605, 821, 1144, 1262, 1508, 1676
Tru1I TTAA 5 cut(s) 299, 570, 968, 1016, 1713
Tru9I TTAA 5 cut(s) 299, 570, 968, 1016, 1713
TscAI CASTG 1 cut(s) 1074
TseFI GTSAC 1 cut(s) 1252
Tsp45I GTSAC 1 cut(s) 1252
TspGWI ACGGA 2 cut(s) 293, 343
TspRI CASTG 1 cut(s) 1074
Van91I CCANNNNNTGG 1 cut(s) 1393
VspI ATTAAT 1 cut(s) 299
XapI RAATTY 5 cut(s) 434, 527, 679, 1487, 1664
XbaI TCTAGA 1 cut(s) 763
XceI RCATGY 3 cut(s) 52, 426, 1367
XcmI CCANNNNNNNNNTGG 1 cut(s) 434
XhoI CTCGAG 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 954
XmnI GAANNNNTTC 2 cut(s) 943, 1589
XspI CTAG 3 cut(s) 764, 1046, 1466
Zsp2I ATGCAT 1 cut(s) 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.