Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010407.1

Orthogroup ID

OG0010496

Physical Location & Seq

Genomic Coordinates Reverse (-)

5791 .. 7330

Gene Structure 1540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010407.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

atggctggaacaatcttggtccaggctcgagacccggctaagttaaatgtggagatacaaaatgcagttgatgagcatagactaaatgatgcgtggaagttttatgagcagtatatgcagatggatgggtttcctaggaaatctgttgttaataagcttttagcgggttttgtagaaagctgtgatgttcagtggcttgagagggcttatggattggtagagaaggctattggggaaagtaaacagaacttgttggagagaaacacgctgatttatgtttcttttggtcttgcgagagttgggttaccagttcctgcgtggactgttttgagaagaatgctcaaggggctaaatgttgctgctgagttgattcttgagataggttacttgttccaagatcacaggatcgacccacgtaagaagtgtaatgcacctctgattgctatgaagcctaatactactgctttcaacattgctttggctggttgtctcttgtttggaacaactaagaaagcagagcagctccttgacatgatgcctcgagttggtatcaaaacggatgctaacttattgatattaatggcacaaatatatgagagaaatggatggagagatgagcttagaaaacttcaaagatacgtagatgaagcccataacctaagtgatgtccagttttgccagttctacaattgcttgctggcatgccatttgaaattcggggatttagactctgcatctaacatggttttggaaatgctgcggaaagcaaaagaagcaagaggttctcttgcagtagcaacgctggtatttgatgctgctggaaggggaagcaagttccctcatggagttaattctggatcctggcattattcaagccatggagaatcatatgcttatggagacaataggttacctggtaatcttgtattatcttacgaagagttttcaagggatagaaatttcttgagacttgaggttgaggctaaggaagtgctgggtgcattgttagctaaattgcagagccaagttgaattggtaacaactgaccacagtatcctcccgccaactgaaaaagtatttgtgaaattagtcaaggcctttctagaagcagacaaaactaaggatttggctgcctttcttataaaggcagataaagaagcttccccagcttccagtgatgattcagccttggttcatgtcattaattcatgcatatcgcttggatggttaaacaaggcacatgaccttcttgatgaaatgtgcttggctggtgtaagaactggttcttccgtatacgccgctcttttaaaagcatattgtgaagcaaaccaagcaggaaatgcagcatcactattaagagatgctcgtaaggctggtatccagctagatgcaagcagttatgaggcactgatccgatcaaaggtgcttcaaaatgatacacaggtgtacacagagaggttgagaggttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

490

Amino Acids

54.64

Weight (kDa)

7.57

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03100
fragaria_vesca	FvH4_5g32870
malus_domestica	MD11G1281500.v1.1
prunus_persica	Prupe.8G237400_v2.0.a1
pyrus_communis	pycom11g24960
rosa_chinensis	RchiOBHm_Chr7g0230741 RchiOBHm_Chr7g0230851
rosa_laevigata	RLG00000001478
rosa_multiflora	Rmu_sc0007883.1_g000006 Rmu_sc0010407.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229770
rosa_rugosa	Rorug07G0262500
rosa_samantha	Rh7AG414200 Rh7AG414900 Rh7BG391400 Rh7CG433100 Rh7CG433600 Rh7DG409800
rosa_wichuraiana	Rw7G034240 Rw7G034270 Rw7G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1142
AccBSI	CCGCTC	1 cut(s)	1301
AccI	GTMKAC	1 cut(s)	1293
AciI	CCGC	4 cut(s)	164, 760, 1061, 1299
AclWI	GGATC	4 cut(s)	413, 852, 865, 1405
AcsI	RAATTY	2 cut(s)	713, 958
AfaI	GTAC	1 cut(s)	1448
AfiI	CCNNNNNNNGG	2 cut(s)	545, 1420
AgsI	TTSAA	7 cut(s)	469, 632, 712, 873, 948, 1031, 1430
AjnI	CCWGG	3 cut(s)	21, 860, 913
AluBI	AGCT	8 cut(s)	157, 180, 523, 619, 1010, 1160, 1169, 1384
AluI	AGCT	8 cut(s)	157, 180, 523, 619, 1010, 1160, 1169, 1384
Alw26I	GTCTC	4 cut(s)	24, 494, 894, 961
AlwI	GGATC	4 cut(s)	413, 852, 865, 1405
AlwNI	CAGNNNCTG	1 cut(s)	314
Ama87I	CYCGRG	2 cut(s)	27, 540
AoxI	GGCC	1 cut(s)	1095
ApeKI	GCWGC	6 cut(s)	359, 520, 757, 815, 1130, 1343
ApoI	RAATTY	2 cut(s)	713, 958
AseI	ATTAAT	2 cut(s)	578, 1203
Asp700I	GAANNNNTTC	1 cut(s)	1282
AspA2I	CCTAGG	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	19
AsuC2I	CCSGG	1 cut(s)	35
AvaI	CYCGRG	2 cut(s)	27, 540
AvaII	GGWCC	1 cut(s)	19
AvrII	CCTAGG	1 cut(s)	134
BaeI	ACNNNNGTAYC	4 cut(s)	1036, 1069, 1428, 1461
BamHI	GGATCC	1 cut(s)	857
BbvI	GCAGC	6 cut(s)	346, 532, 744, 802, 1117, 1355
BccI	CCATC	4 cut(s)	115, 119, 600, 1218
BciT130I	CCWGG	3 cut(s)	23, 862, 915
BciVI	GTATCC	2 cut(s)	1064, 1388
BcnI	CCSGG	1 cut(s)	35
BcoDI	GTCTC	4 cut(s)	24, 494, 894, 961
BfaI	CTAG	3 cut(s)	135, 1103, 1385
BfuI	GTATCC	2 cut(s)	1064, 1388
BisI	GCNGC	7 cut(s)	360, 521, 758, 816, 1131, 1299, 1344
BlnI	CCTAGG	1 cut(s)	134
BlsI	GCNGC	7 cut(s)	361, 522, 759, 817, 1132, 1300, 1345
Bme1390I	CCNGG	4 cut(s)	23, 35, 862, 915
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	2 cut(s)	27, 540
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	859
BmrFI	CCNGG	4 cut(s)	23, 35, 862, 915
BmsI	GCATC	8 cut(s)	79, 525, 550, 743, 802, 1351, 1355, 1378
Bpu10I	CCTNAGC	1 cut(s)	984
BpuEI	CTTGAG	5 cut(s)	218, 326, 395, 985, 992
BpuMI	CCSGG	1 cut(s)	35
BsaAI	YACGTR	2 cut(s)	416, 640
BsaI	GGTCTC	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	134, 877, 1188
Bsc4I	CCNNNNNNNGG	2 cut(s)	545, 1420
Bse1I	ACTGG	5 cut(s)	308, 670, 679, 1173, 1285
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	3 cut(s)	23, 862, 915
BseDI	CCNNGG	3 cut(s)	134, 877, 1188
BseGI	GGATG	4 cut(s)	130, 565, 611, 1229
BseLI	CCNNNNNNNGG	2 cut(s)	545, 1420
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	5 cut(s)	308, 670, 679, 1173, 1285
BseXI	GCAGC	6 cut(s)	346, 532, 744, 802, 1117, 1355
BseYI	CCCAGC	2 cut(s)	994, 1165
BshFI	GGCC	1 cut(s)	1097
BsiHKCI	CYCGRG	2 cut(s)	27, 540
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	545, 1420
BsmAI	GTCTC	4 cut(s)	24, 494, 894, 961
BsmI	GAATGC	1 cut(s)	342
BsnI	GGCC	1 cut(s)	1097
Bso31I	GGTCTC	1 cut(s)	24
BsoBI	CYCGRG	2 cut(s)	27, 540
Bsp1407I	TGTACA	1 cut(s)	1446
Bsp143I	GATC	5 cut(s)	397, 405, 857, 1410, 1415
Bsp19I	CCATGG	1 cut(s)	877
BspACI	CCGC	4 cut(s)	164, 760, 1061, 1299
BspANI	GGCC	1 cut(s)	1097
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	859
BspPI	GGATC	4 cut(s)	413, 852, 865, 1405
BspTNI	GGTCTC	1 cut(s)	24
BsrBI	CCGCTC	1 cut(s)	1301
BsrDI	GCAATG	1 cut(s)	471
BsrGI	TGTACA	1 cut(s)	1446
BsrI	ACTGG	5 cut(s)	308, 670, 679, 1173, 1285
BssECI	CCNNGG	3 cut(s)	134, 877, 1188
BssMI	GATC	5 cut(s)	397, 405, 857, 1410, 1415
BssNAI	GTATAC	1 cut(s)	1294
BssT1I	CCWWGG	3 cut(s)	134, 877, 1188
Bst1107I	GTATAC	1 cut(s)	1294
Bst2UI	CCWGG	3 cut(s)	23, 862, 915
Bst4CI	ACNGT	2 cut(s)	325, 1052
Bst6I	CTCTTC	1 cut(s)	933
BstAPI	GCANNNNNTGC	2 cut(s)	115, 1340
BstAUI	TGTACA	1 cut(s)	1446
BstBAI	YACGTR	2 cut(s)	416, 640
BstC8I	GCNNGC	4 cut(s)	695, 699, 703, 1393
BstDEI	CTNAG	7 cut(s)	39, 363, 507, 620, 659, 984, 1119
BstDSI	CCRYGG	1 cut(s)	877
BstEII	GGTNACC	2 cut(s)	303, 909
BstF5I	GGATG	4 cut(s)	130, 565, 611, 1229
BstKTI	GATC	5 cut(s)	400, 408, 860, 1413, 1418
BstMAI	GTCTC	4 cut(s)	24, 494, 894, 961
BstMBI	GATC	5 cut(s)	397, 405, 857, 1410, 1415
BstMWI	GCNNNNNNNGC	8 cut(s)	115, 346, 773, 1007, 1166, 1331, 1340, 1370
BstNI	CCWGG	3 cut(s)	23, 862, 915
BstNSI	RCATGY	1 cut(s)	705
BstPI	GGTNACC	2 cut(s)	303, 909
BstSCI	CCNGG	4 cut(s)	21, 33, 860, 913
BstSNI	TACGTA	1 cut(s)	640
BstV1I	GCAGC	6 cut(s)	346, 532, 744, 802, 1117, 1355
BstX2I	RGATCY	1 cut(s)	857
BstYI	RGATCY	1 cut(s)	857
BstZ17I	GTATAC	1 cut(s)	1294
BsuI	GTATCC	2 cut(s)	1064, 1388
BsuRI	GGCC	1 cut(s)	1097
BtgI	CCRYGG	1 cut(s)	877
BtsCI	GGATG	4 cut(s)	130, 565, 611, 1229
BtsIMutI	CAGTG	3 cut(s)	197, 1180, 1406
Cac8I	GCNNGC	4 cut(s)	695, 699, 703, 1393
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	19
CsiI	ACCWGGT	1 cut(s)	913
Csp6I	GTAC	1 cut(s)	1447
CviAII	CATG	8 cut(s)	532, 702, 742, 842, 878, 1196, 1209, 1241
CviQI	GTAC	1 cut(s)	1447
DdeI	CTNAG	7 cut(s)	39, 363, 507, 620, 659, 984, 1119
DpnI	GATC	5 cut(s)	399, 407, 859, 1412, 1417
DpnII	GATC	5 cut(s)	397, 405, 857, 1410, 1415
DraI	TTTAAA	1 cut(s)	1308
Eam1104I	CTCTTC	1 cut(s)	933
EarI	CTCTTC	1 cut(s)	933
Eco105I	TACGTA	1 cut(s)	640
Eco130I	CCWWGG	3 cut(s)	134, 877, 1188
Eco147I	AGGCCT	1 cut(s)	1097
Eco31I	GGTCTC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	19
Eco88I	CYCGRG	2 cut(s)	27, 540
Eco91I	GGTNACC	2 cut(s)	303, 909
EcoO65I	GGTNACC	2 cut(s)	303, 909
EcoRII	CCWGG	3 cut(s)	21, 860, 913
EcoT14I	CCWWGG	3 cut(s)	134, 877, 1188
EcoT22I	ATGCAT	1 cut(s)	1214
ErhI	CCWWGG	3 cut(s)	134, 877, 1188
FaeI	CATG	8 cut(s)	535, 705, 745, 845, 881, 1199, 1212, 1244
FatI	CATG	8 cut(s)	531, 701, 741, 841, 877, 1195, 1208, 1240
FauI	CCCGC	2 cut(s)	157, 1068
FauNDI	CATATG	1 cut(s)	889
FblI	GTMKAC	1 cut(s)	1293
Fnu4HI	GCNGC	7 cut(s)	360, 521, 758, 816, 1131, 1299, 1344
FokI	GGATG	4 cut(s)	137, 572, 618, 1236
Fsp4HI	GCNGC	7 cut(s)	360, 521, 758, 816, 1131, 1299, 1344
FspBI	CTAG	3 cut(s)	135, 1103, 1385
GluI	GCNGC	7 cut(s)	360, 521, 758, 816, 1131, 1299, 1344
GsaI	CCCAGC	2 cut(s)	998, 1169
HaeIII	GGCC	1 cut(s)	1097
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	8 cut(s)	535, 705, 745, 845, 881, 1199, 1212, 1244
HindIII	AAGCTT	2 cut(s)	155, 1158
HinfI	GANTC	4 cut(s)	370, 728, 884, 1181
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	5 cut(s)	242, 321, 1294, 1447, 1449
Hpy188I	TCNGA	2 cut(s)	438, 1415
Hpy188III	TCNNGA	6 cut(s)	29, 374, 855, 964, 1103, 1250
Hpy8I	GTNNAC	5 cut(s)	242, 321, 1294, 1447, 1449
HpyAV	CCTTC	3 cut(s)	217, 816, 1256
HpyCH4III	ACNGT	2 cut(s)	325, 1052
HpyCH4IV	ACGT	2 cut(s)	415, 639
HpyF10VI	GCNNNNNNNGC	8 cut(s)	115, 346, 773, 1007, 1166, 1331, 1340, 1370
HpyF3I	CTNAG	7 cut(s)	39, 363, 507, 620, 659, 984, 1119
HpySE526I	ACGT	2 cut(s)	415, 639
Hsp92II	CATG	8 cut(s)	535, 705, 745, 845, 881, 1199, 1212, 1244
Kzo9I	GATC	5 cut(s)	397, 405, 857, 1410, 1415
LmnI	GCTCC	1 cut(s)	528
Lsp1109I	GCAGC	6 cut(s)	346, 532, 744, 802, 1117, 1355
LweI	GCATC	8 cut(s)	79, 525, 550, 743, 802, 1351, 1355, 1378
MabI	ACCWGGT	1 cut(s)	913
MaeI	CTAG	3 cut(s)	135, 1103, 1385
MaeII	ACGT	2 cut(s)	415, 639
MaeIII	GTNAC	4 cut(s)	303, 383, 909, 1036
MalI	GATC	5 cut(s)	399, 407, 859, 1412, 1417
MbiI	CCGCTC	1 cut(s)	1301
MboI	GATC	5 cut(s)	397, 405, 857, 1410, 1415
MboII	GAAGA	3 cut(s)	345, 950, 1278
MfeI	CAATTG	1 cut(s)	688
MflI	RGATCY	1 cut(s)	857
MluCI	AATT	8 cut(s)	688, 713, 850, 958, 1013, 1031, 1085, 1204
MlyI	GAGTC	1 cut(s)	722
MmeI	TCCRAC	1 cut(s)	234
Mph1103I	ATGCAT	1 cut(s)	1214
MroXI	GAANNNNTTC	1 cut(s)	1282
MseI	TTAA	8 cut(s)	44, 150, 578, 849, 1203, 1229, 1307, 1355
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	4 cut(s)	23, 35, 862, 915
MunI	CAATTG	1 cut(s)	688
Mva1269I	GAATGC	1 cut(s)	342
MvaI	CCWGG	3 cut(s)	23, 862, 915
MwoI	GCNNNNNNNGC	8 cut(s)	115, 346, 773, 1007, 1166, 1331, 1340, 1370
NciI	CCSGG	1 cut(s)	35
NcoI	CCATGG	1 cut(s)	877
NdeI	CATATG	1 cut(s)	889
NdeII	GATC	5 cut(s)	397, 405, 857, 1410, 1415
NlaIII	CATG	8 cut(s)	535, 705, 745, 845, 881, 1199, 1212, 1244
NlaIV	GGNNCC	1 cut(s)	859
NsiI	ATGCAT	1 cut(s)	1214
NspI	RCATGY	1 cut(s)	705
PaeI	GCATGC	1 cut(s)	705
PaeR7I	CTCGAG	2 cut(s)	27, 540
PceI	AGGCCT	1 cut(s)	1097
PctI	GAATGC	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	1282
PfeI	GAWTC	3 cut(s)	370, 884, 1181
PkrI	GCNGC	7 cut(s)	361, 522, 759, 817, 1132, 1300, 1345
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
Ppu21I	YACGTR	2 cut(s)	416, 640
PshBI	ATTAAT	2 cut(s)	578, 1203
PsiI	TTATAA	1 cut(s)	1142
Psp6I	CCWGG	3 cut(s)	21, 860, 913
PspEI	GGTNACC	2 cut(s)	303, 909
PspFI	CCCAGC	2 cut(s)	994, 1165
PspGI	CCWGG	3 cut(s)	21, 860, 913
PspN4I	GGNNCC	1 cut(s)	859
PspPI	GGNCC	1 cut(s)	19
PspXI	VCTCGAGB	1 cut(s)	540
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	857
RsaI	GTAC	1 cut(s)	1448
RsaNI	GTAC	1 cut(s)	1447
SaqAI	TTAA	8 cut(s)	44, 150, 578, 849, 1203, 1229, 1307, 1355
SatI	GCNGC	7 cut(s)	360, 521, 758, 816, 1131, 1299, 1344
Sau3AI	GATC	5 cut(s)	397, 405, 857, 1410, 1415
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	722
ScrFI	CCNGG	4 cut(s)	23, 35, 862, 915
SexAI	ACCWGGT	1 cut(s)	913
SfaNI	GCATC	8 cut(s)	79, 525, 550, 743, 802, 1351, 1355, 1378
Sfr274I	CTCGAG	2 cut(s)	27, 540
SinI	GGWCC	1 cut(s)	19
SlaI	CTCGAG	2 cut(s)	27, 540
SmlI	CTYRAG	7 cut(s)	27, 197, 341, 374, 540, 964, 971
SmoI	CTYRAG	7 cut(s)	27, 197, 341, 374, 540, 964, 971
SnaBI	TACGTA	1 cut(s)	640
SphI	GCATGC	1 cut(s)	705
Sse9I	AATT	8 cut(s)	688, 713, 850, 958, 1013, 1031, 1085, 1204
SseBI	AGGCCT	1 cut(s)	1097
SsiI	CCGC	4 cut(s)	164, 760, 1061, 1299
SspMI	CTAG	3 cut(s)	135, 1103, 1385
StuI	AGGCCT	1 cut(s)	1097
StyD4I	CCNGG	4 cut(s)	21, 33, 860, 913
StyI	CCWWGG	3 cut(s)	134, 877, 1188
TaaI	ACNGT	2 cut(s)	325, 1052
TaiI	ACGT	2 cut(s)	418, 642
TaqI	TCGA	3 cut(s)	28, 408, 541
TasI	AATT	8 cut(s)	688, 713, 850, 958, 1013, 1031, 1085, 1204
TatI	WGTACW	1 cut(s)	1446
TauI	GCSGC	1 cut(s)	1301
TfiI	GAWTC	3 cut(s)	370, 884, 1181
Tru1I	TTAA	8 cut(s)	44, 150, 578, 849, 1203, 1229, 1307, 1355
Tru9I	TTAA	8 cut(s)	44, 150, 578, 849, 1203, 1229, 1307, 1355
TscAI	CASTG	3 cut(s)	197, 1180, 1413
TseI	GCWGC	6 cut(s)	359, 520, 757, 815, 1130, 1343
TspDTI	ATGAA	5 cut(s)	461, 660, 1184, 1197, 1269
TspGWI	ACGGA	2 cut(s)	572, 1279
TspRI	CASTG	3 cut(s)	197, 1180, 1413
VpaK11BI	GGWCC	1 cut(s)	19
VspI	ATTAAT	2 cut(s)	578, 1203
XapI	RAATTY	2 cut(s)	713, 958
XbaI	TCTAGA	1 cut(s)	1102
XceI	RCATGY	1 cut(s)	705
XcmI	CCANNNNNNNNNTGG	1 cut(s)	315
XhoI	CTCGAG	2 cut(s)	27, 540
XmaJI	CCTAGG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	1293
XmnI	GAANNNNTTC	1 cut(s)	1282
XspI	CTAG	3 cut(s)	135, 1103, 1385
Zsp2I	ATGCAT	1 cut(s)	1214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.