Rorug07G0262500

Pentatricopeptide repeat-containing protein At1g03100

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0010496
Physical Location & Seq
Forward (+)
24701144 .. 24702299
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0262500.1

Sequence Viewer

Length: 297 bp
ATGGGAGCCTCCAGTGGGCCAAGGCTTTCTGGAATGCAGAGACAAGTACTTGGTCTATACAGAGAGTTCTTGCGGGCAGCTCGTTTAAAATCTGCTGAAGATCGACACAAGATTGAGTCACTTGTGTCGAATGAGTTCCGCCACAATGCCAAGAATGTAGACCGCAAGAATTTTCTTTACATTGAGTACTTGGTTCGCCGCGGAAGGAAACAGCTTGATCAGCTCAAGAGCCCCGATACTGTTGGATTATCAGCCCTGAATGTGAGTTTCTCTGAAACGAAACGTCCTACGCATTGA

Protein Analysis

98

Amino Acids

11.27

Weight (kDa)

10.51

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 14 - 74 5.6e-12 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 201
AciI CCGC 5 cut(s) 73, 139, 163, 199, 201
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 2 cut(s) 48, 188
AfiI CCNNNNNNNGG 1 cut(s) 15
AluBI AGCT 3 cut(s) 80, 214, 223
AluI AGCT 3 cut(s) 80, 214, 223
Alw26I GTCTC 1 cut(s) 34
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 169
Asp700I GAANNNNTTC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 89
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 34
BisI GCNGC 2 cut(s) 78, 199
BlsI GCNGC 2 cut(s) 79, 200
BmcAI AGTACT 2 cut(s) 48, 188
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 209
BsaJI CCNNGG 2 cut(s) 20, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 20, 199
BseLI CCNNNNNNNGG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 34
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 100, 217
BspACI CCGC 5 cut(s) 73, 139, 163, 199, 201
BspANI GGCC 1 cut(s) 19
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 7
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 20, 199
BssMI GATC 2 cut(s) 100, 217
BssT1I CCWWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 75
BstDSI CCRYGG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 2 cut(s) 103, 220
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 100, 217
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 17
Cfr42I CCGCGG 1 cut(s) 202
Csp6I GTAC 2 cut(s) 47, 187
CviJI RGCY 8 cut(s) 8, 19, 25, 80, 214, 223, 231, 254
CviKI_1 RGCY 8 cut(s) 8, 19, 25, 80, 214, 223, 231, 254
CviQI GTAC 2 cut(s) 47, 187
DpnI GATC 2 cut(s) 102, 219
DpnII GATC 2 cut(s) 100, 217
DraI TTTAAA 1 cut(s) 87
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 20
FaiI YATR 1 cut(s) 58
FauI CCCGC 1 cut(s) 66
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 2 cut(s) 78, 199
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 78, 199
GluI GCNGC 2 cut(s) 78, 199
HaeIII GGCC 1 cut(s) 19
HinfI GANTC 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 2 cut(s) 30, 226
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpySE526I ACGT 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 217
KspI CCGCGG 1 cut(s) 202
Kzo9I GATC 2 cut(s) 100, 217
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 3 cut(s) 15, 25, 269
Lsp1109I GCAGC 1 cut(s) 89
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 117
MalI GATC 2 cut(s) 102, 219
MboI GATC 2 cut(s) 100, 217
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 169
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 1 cut(s) 19
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 39
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 2 cut(s) 100, 217
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 117
PctI GAATGC 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 79, 200
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 17
RsaI GTAC 2 cut(s) 48, 188
RsaNI GTAC 2 cut(s) 47, 187
SacII CCGCGG 1 cut(s) 202
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 2 cut(s) 78, 199
Sau3AI GATC 2 cut(s) 100, 217
Sau96I GGNCC 1 cut(s) 17
ScaI AGTACT 2 cut(s) 48, 188
SchI GAGTC 1 cut(s) 125
SduI GDGCHC 1 cut(s) 233
SetI ASST 4 cut(s) 82, 216, 225, 286
Sfr303I CCGCGG 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 169
SsiI CCGC 5 cut(s) 73, 139, 163, 199, 201
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 1 cut(s) 286
TaqI TCGA 2 cut(s) 103, 128
TasI AATT 1 cut(s) 169
TatI WGTACW 2 cut(s) 46, 186
TauI GCSGC 1 cut(s) 201
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 117
TspRI CASTG 1 cut(s) 19
XapI RAATTY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 134
ZrmI AGTACT 2 cut(s) 48, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.