Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010496

Physical Location & Seq

Genomic Coordinates Forward (+)

16118924 .. 16121925

Gene Structure 3002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001478

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2388 bp

ATGCTTTGTGCGAGGAAATTGAGCCATGGGAGAGCTTCGGTTTGCCCTTGTGTTTTATATGTTGTACAAGCATCGTATGCTAGTTTAAGTTTAGCTGGGTTGTTTGAATCTCAGGTTCGAGCTTATTCAAATGTTGGGTATGTTTCTGGGTCTGTTATTTCTTATTGTTTGGCCAAGTCCATTGTGCAAGATTGTATTTTGAGATTACCCAAAAAGTCTATATCTGAAGTCGGTTCATTTTCGACTATGGCTGGAACAATCTTGGTCCAGGCTCGAGACCCGGCTAAGTTAAATGTGGAGATACAAAATGCAGTTGATGAGCATAGACTAAATGATGCGTGGAAGTTTTATGAGCAGTATATGCAGATGGATGGGTTTCCTAGGAAATCTCTTGTTAATAAGCTTTTAGCGGGTTTTGTAGAAAGCTGTGATGTTCAGTGGCTTGAGAAGGCTTATGGGTTGGTAGAGCAGGCTATTGGGGAAAGCAAACAGAACTTGTTGGAGAGAAACATGCTGATTTATGTTTCTTTTGGTCTTGCGAGAGCTGGGTTACCAGTTCCTGCGTCGACTGTTTTGAGAAGAGTGGTAGAAATGGAAGAATACCCTCCTGTTGCTGCTTGGTCTGCTGTCTTGGCCTACATGTCTCAAACAGCCCAAGGGGCTTATGTTGCTGCTGAGTTGATTCTTGAGATAGGTTACTTGTTCCAAGATCACAGGATCGACCCACGTAAGAAGTGTAATGCGCCTTTGATTGCTATGAAGCCTAATACTACTGCTTTCAACATTGCTTTGGCTGGTTGTCTCTTGTTTGGAACAACTAAGAAAGCAGAGCAGCTCCTTGAAATGATGCCTCGAGTTGGTATCAAAACGGATGCTAACTTATTGATATTAATGGCACAAATATACGAGAGAAATGGACGGAGAGATGAGCTTAGAAAACTTCAAAGATACGTAGATGAAGCCCATAACCTTAGTGACGTCCAGTTTCGCCAGTTCTACAATTGCTTGCTGGCATGCCATTTGAAATTCGGGGATTTAGATGCTGCAGCTAACATGGTTTTGGAAATGCTGCGGAAAGCAAAAGAAGCAAGCGGTTCTCTTGCAGTAGCAACACTGGTATTTGATGCTGCTGGAAGGGGAAACCAATTCCCTCATGGAGTTAATTCTGGATCCTGGCATCATTCAAGCCATGGAGAATCATATGCTTATGAAGACAATAGGCTACCTGGTAATCTTGTATTATCTTATGAAGAGTTTTCTAGGGATAGAAATTTCTTGAGACTTGAGGGTGAGGCTAAGGAAGTGCTGGGTGCATTGTTAGCTAAATTGCAGAGCCAAGTTGAATTGGTAACAACTGACCGTGGTATCCTCCAGCCAACTGAAAAGATATTTGCGAAATTAGTCAAGGCCTTTCTGGAAGCAGACAAGACCAAGGATTTGGCAGCCTTTCTTGTAAAGGCAGATAAAGAAGATTCCCCAGCTTCCAATGATGATTCAGCCTTGGTTCATGTCATTAATTCATGCATATCGCTTGGATGGTTAGACAAGGCACATGACCTTCTTGATGAAATGTGCTTGGCTGGTGTAAGAACTGGTTCATCTGTATACACCGCTCTTTTAAAAGCATATTGTGAAGCAAACCAAGCAGGAAATGCAGCATCACTATTAAGAGATGCTCGTAAGGCTGGGATCCAGCTAGATGCAAGCAGTTATGAGGCACTGATCCGATCGAAGGTGCTTCAAAATGATACACAGGGAGCTCTTCATTTGTACACAGAGATGAAAGTGGCTAAGATTCCAAAAGCTGGTCATCAGGAGTTTGAGAGATTGGTGAAGGAATGTGCAGAGGGTTGTGAACCGAGGTTGATGGTAAAGCTGTTGCAGGAAATAAAGGAAGGGCAGGCGACGTTGGATTCTGCTGTTCATGATTGGAACAACGTAATCCACTTTTTTTGCAGGAAGAGATTGATGCAAGATGCTGAGAAGGCTCTGAAGAAGATGAGAAGTCTGGGGCATGCCCCAAATGCTCAAACTTTCCATTCTATGGTCACTGGGTATGCTGCTGTGGGAGGAAAATATATAGAGGTAACAGAGCTCTGGGGAGAGATGAAGTCTCTAGCATATAACACCTCAATGGAATTTGATCAGGAACTCCTGGATTCTGTTCTTTACACTTTCGTGAGGGGTGGGTTTTTCAGTAGAGCAAATGAAGTCTTGGACATGATGGAGAAAGCGAAGATGTTCATTGACAAGTACAAGTACAGAACACTCTTCTTGAAGTACCATAAAACACTTCACAAAGGCAAAGCTCCCAAATTCCAGACAGAATCCCAACATAAAAAGAGAGAAGCAGCATTAGCATTTAAGAACTGGATAGGAGTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

796

Amino Acids

88.79

Weight (kDa)

8.36

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_At1g68980	PF25245	92 - 221	2.6e-08	At1g68980, TPR repeats
PPR_2	PF13041	644 - 687	1e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03100
fragaria_vesca	FvH4_5g32870
malus_domestica	MD11G1281500.v1.1
prunus_persica	Prupe.8G237400_v2.0.a1
pyrus_communis	pycom11g24960
rosa_chinensis	RchiOBHm_Chr7g0230741 RchiOBHm_Chr7g0230851
rosa_laevigata	RLG00000001478
rosa_multiflora	Rmu_sc0007883.1_g000006 Rmu_sc0010407.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229770
rosa_rugosa	Rorug07G0262500
rosa_samantha	Rh7AG414200 Rh7AG414900 Rh7BG391400 Rh7CG433100 Rh7CG433600 Rh7DG409800
rosa_wichuraiana	Rw7G034240 Rw7G034270 Rw7G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	981
AccB7I	CCANNNNNTGG	2 cut(s)	1805, 2044
AccBSI	CCGCTC	1 cut(s)	1613
AccI	GTMKAC	2 cut(s)	566, 1605
AciI	CCGC	4 cut(s)	410, 1072, 1092, 1611
AclWI	GGATC	6 cut(s)	725, 1164, 1177, 1684, 1697, 1717
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	4 cut(s)	1025, 1270, 2138, 2315
AcuI	CTGAAG	2 cut(s)	246, 2012
AcyI	GRCGYC	1 cut(s)	978
AfaI	GTAC	5 cut(s)	66, 1772, 2255, 2261, 2282
AfiI	CCNNNNNNNGG	4 cut(s)	857, 1732, 1805, 2044
AflIII	ACRYGT	1 cut(s)	639
AjnI	CCWGG	4 cut(s)	267, 1172, 1225, 2154
AleI	CACNNNNGTG	1 cut(s)	2177
Alw21I	GWGCWC	2 cut(s)	1762, 2097
Alw26I	GTCTC	5 cut(s)	270, 648, 806, 1273, 2118
AlwI	GGATC	6 cut(s)	725, 1164, 1177, 1684, 1697, 1717
AlwNI	CAGNNNCTG	1 cut(s)	560
Ama87I	CYCGRG	2 cut(s)	273, 852
AoxI	GGCC	3 cut(s)	171, 633, 1407
ApoI	RAATTY	4 cut(s)	1025, 1270, 2138, 2315
ArsI	GACNNNNNNTTYG	2 cut(s)	1420, 1452
AseI	ATTAAT	2 cut(s)	890, 1515
Asp700I	GAANNNNTTC	2 cut(s)	1594, 2240
AspA2I	CCTAGG	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	745
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	2 cut(s)	1301, 1843
AvaI	CYCGRG	2 cut(s)	273, 852
AvaII	GGWCC	1 cut(s)	265
AvrII	CCTAGG	1 cut(s)	380
BaeI	ACNNNNGTAYC	2 cut(s)	1348, 1381
BalI	TGGCCA	1 cut(s)	173
BamHI	GGATCC	2 cut(s)	1169, 1689
BanII	GRGCYC	2 cut(s)	1762, 2097
BbsI	GAAGAC	1 cut(s)	1218
Bbv12I	GWGCWC	2 cut(s)	1762, 2097
BccI	CCATC	5 cut(s)	361, 365, 1530, 1861, 2218
BciT130I	CCWGG	4 cut(s)	269, 1174, 1227, 2156
BciVI	GTATCC	1 cut(s)	1376
BclI	TGATCA	1 cut(s)	2143
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	5 cut(s)	270, 648, 806, 1273, 2118
BfaI	CTAG	5 cut(s)	81, 381, 1260, 1697, 2117
BfmI	CTRYAG	1 cut(s)	1044
BfuI	GTATCC	1 cut(s)	1376
BglI	GCCNNNNNGGC	1 cut(s)	659
BlnI	CCTAGG	1 cut(s)	380
Bme1390I	CCNGG	5 cut(s)	269, 281, 1174, 1227, 2156
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	2 cut(s)	273, 852
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	1171, 1691
BmrFI	CCNGG	5 cut(s)	269, 281, 1174, 1227, 2156
BmrI	ACTGGG	1 cut(s)	2061
BmuI	ACTGGG	1 cut(s)	2061
BpiI	GAAGAC	1 cut(s)	1218
BpmI	CTGGAG	1 cut(s)	1355
Bpu10I	CCTNAGC	1 cut(s)	1296
BpuEI	CTTGAG	4 cut(s)	464, 707, 1297, 1304
BpuMI	CCSGG	1 cut(s)	281
BsaAI	YACGTR	2 cut(s)	728, 952
BsaHI	GRCGYC	1 cut(s)	978
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	8 cut(s)	25, 380, 655, 1189, 1360, 1431, 1500, 1859
Bsc4I	CCNNNNNNNGG	4 cut(s)	857, 1732, 1805, 2044
Bse1I	ACTGG	7 cut(s)	554, 982, 991, 1119, 1597, 2056, 2375
Bse3DI	GCAATG	1 cut(s)	783
BseBI	CCWGG	4 cut(s)	269, 1174, 1227, 2156
BseDI	CCNNGG	8 cut(s)	25, 380, 655, 1189, 1360, 1431, 1500, 1859
BseGI	GGATG	3 cut(s)	376, 877, 1541
BseLI	CCNNNNNNNGG	4 cut(s)	857, 1732, 1805, 2044
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	3 cut(s)	125, 666, 1971
BseNI	ACTGG	7 cut(s)	554, 982, 991, 1119, 1597, 2056, 2375
BseYI	CCCAGC	5 cut(s)	95, 545, 1306, 1477, 1685
BsgI	GTGCAG	1 cut(s)	1863
Bsh1285I	CGRYCG	1 cut(s)	1730
BshFI	GGCC	3 cut(s)	173, 635, 1409
BsiEI	CGRYCG	1 cut(s)	1730
BsiHKAI	GWGCWC	2 cut(s)	1762, 2097
BsiHKCI	CYCGRG	2 cut(s)	273, 852
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	4 cut(s)	857, 1732, 1805, 2044
BsmAI	GTCTC	5 cut(s)	270, 648, 806, 1273, 2118
BsnI	GGCC	3 cut(s)	173, 635, 1409
Bso31I	GGTCTC	1 cut(s)	270
BsoBI	CYCGRG	2 cut(s)	273, 852
Bsp1286I	GDGCHC	2 cut(s)	1762, 2097
Bsp1407I	TGTACA	2 cut(s)	64, 1770
Bsp143I	GATC	7 cut(s)	709, 717, 1169, 1689, 1722, 1727, 2143
Bsp19I	CCATGG	2 cut(s)	25, 1189
BspACI	CCGC	4 cut(s)	410, 1072, 1092, 1611
BspANI	GGCC	3 cut(s)	173, 635, 1409
BspCNI	CTCAG	3 cut(s)	124, 667, 1972
BspHI	TCATGA	1 cut(s)	1924
BspLI	GGNNCC	2 cut(s)	1171, 1691
BspMAI	CTGCAG	1 cut(s)	1048
BspPI	GGATC	6 cut(s)	725, 1164, 1177, 1684, 1697, 1717
BspQI	GCTCTTC	1 cut(s)	1767
BspTNI	GGTCTC	1 cut(s)	270
BsrBI	CCGCTC	1 cut(s)	1613
BsrDI	GCAATG	1 cut(s)	783
BsrGI	TGTACA	2 cut(s)	64, 1770
BsrI	ACTGG	7 cut(s)	554, 982, 991, 1119, 1597, 2056, 2375
BssECI	CCNNGG	8 cut(s)	25, 380, 655, 1189, 1360, 1431, 1500, 1859
BssMI	GATC	7 cut(s)	709, 717, 1169, 1689, 1722, 1727, 2143
BssNAI	GTATAC	1 cut(s)	1606
BssNI	GRCGYC	1 cut(s)	978
BssT1I	CCWWGG	6 cut(s)	25, 380, 655, 1189, 1431, 1500
Bst1107I	GTATAC	1 cut(s)	1606
Bst2UI	CCWGG	4 cut(s)	269, 1174, 1227, 2156
Bst4CI	ACNGT	2 cut(s)	571, 1361
Bst6I	CTCTTC	5 cut(s)	574, 1245, 1767, 1955, 2276
BstACI	GRCGYC	1 cut(s)	978
BstAPI	GCANNNNNTGC	3 cut(s)	77, 361, 1652
BstAUI	TGTACA	2 cut(s)	64, 1770
BstBAI	YACGTR	2 cut(s)	728, 952
BstC8I	GCNNGC	8 cut(s)	471, 1007, 1011, 1015, 1090, 1705, 1902, 2016
BstDEI	CTNAG	9 cut(s)	111, 285, 675, 819, 932, 971, 1296, 1791, 1980
BstDSI	CCRYGG	3 cut(s)	25, 1189, 1360
BstEII	GGTNACC	1 cut(s)	549
BstF5I	GGATG	3 cut(s)	376, 877, 1541
BstHHI	GCGC	1 cut(s)	745
BstKTI	GATC	7 cut(s)	712, 720, 1172, 1692, 1725, 1730, 2146
BstMAI	GTCTC	5 cut(s)	270, 648, 806, 1273, 2118
BstMBI	GATC	7 cut(s)	709, 717, 1169, 1689, 1722, 1727, 2143
BstMCI	CGRYCG	1 cut(s)	1730
BstNI	CCWGG	4 cut(s)	269, 1174, 1227, 2156
BstNSI	RCATGY	4 cut(s)	514, 643, 1017, 2018
BstPI	GGTNACC	1 cut(s)	549
BstSCI	CCNGG	5 cut(s)	267, 279, 1172, 1225, 2154
BstSFI	CTRYAG	1 cut(s)	1044
BstSNI	TACGTA	1 cut(s)	952
BstV2I	GAAGAC	1 cut(s)	1218
BstX2I	RGATCY	2 cut(s)	1169, 1689
BstXI	CCANNNNNNTGG	1 cut(s)	1438
BstYI	RGATCY	2 cut(s)	1169, 1689
BstZ17I	GTATAC	1 cut(s)	1606
BsuI	GTATCC	1 cut(s)	1376
BsuRI	GGCC	3 cut(s)	173, 635, 1409
BtgI	CCRYGG	3 cut(s)	25, 1189, 1360
BtsCI	GGATG	3 cut(s)	376, 877, 1541
BtsIMutI	CAGTG	4 cut(s)	443, 1112, 1718, 2049
Cac8I	GCNNGC	8 cut(s)	471, 1007, 1011, 1015, 1090, 1705, 1902, 2016
CaiI	CAGNNNCTG	1 cut(s)	560
CciI	TCATGA	1 cut(s)	1924
CfoI	GCGC	1 cut(s)	745
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	1 cut(s)	552
CsiI	ACCWGGT	1 cut(s)	1225
Csp6I	GTAC	5 cut(s)	65, 1771, 2254, 2260, 2281
CspCI	CAANNNNNGTGG	2 cut(s)	1934, 1969
CviQI	GTAC	5 cut(s)	65, 1771, 2254, 2260, 2281
DdeI	CTNAG	9 cut(s)	111, 285, 675, 819, 932, 971, 1296, 1791, 1980
DpnI	GATC	7 cut(s)	711, 719, 1171, 1691, 1724, 1729, 2145
DpnII	GATC	7 cut(s)	709, 717, 1169, 1689, 1722, 1727, 2143
DraI	TTTAAA	1 cut(s)	1620
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	5 cut(s)	574, 1245, 1767, 1955, 2276
EarI	CTCTTC	5 cut(s)	574, 1245, 1767, 1955, 2276
Ecl136II	GAGCTC	2 cut(s)	1760, 2095
Eco105I	TACGTA	1 cut(s)	952
Eco130I	CCWWGG	6 cut(s)	25, 380, 655, 1189, 1431, 1500
Eco147I	AGGCCT	1 cut(s)	1409
Eco24I	GRGCYC	2 cut(s)	1762, 2097
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	2 cut(s)	1760, 2095
Eco57I	CTGAAG	2 cut(s)	246, 2012
Eco88I	CYCGRG	2 cut(s)	273, 852
Eco91I	GGTNACC	1 cut(s)	549
EcoICRI	GAGCTC	2 cut(s)	1760, 2095
EcoO65I	GGTNACC	1 cut(s)	549
EcoRII	CCWGG	4 cut(s)	267, 1172, 1225, 2154
EcoT14I	CCWWGG	6 cut(s)	25, 380, 655, 1189, 1431, 1500
EcoT22I	ATGCAT	1 cut(s)	1526
EcoT38I	GRGCYC	2 cut(s)	1762, 2097
ErhI	CCWWGG	6 cut(s)	25, 380, 655, 1189, 1431, 1500
FauI	CCCGC	1 cut(s)	403
FauNDI	CATATG	1 cut(s)	1201
FbaI	TGATCA	1 cut(s)	2143
FblI	GTMKAC	2 cut(s)	566, 1605
FokI	GGATG	3 cut(s)	383, 884, 1548
FriOI	GRGCYC	2 cut(s)	1762, 2097
FspBI	CTAG	5 cut(s)	81, 381, 1260, 1697, 2117
GlaI	GCGC	1 cut(s)	744
GsaI	CCCAGC	5 cut(s)	99, 549, 1310, 1481, 1689
GsuI	CTGGAG	1 cut(s)	1355
HaeIII	GGCC	3 cut(s)	173, 635, 1409
HapII	CCGG	1 cut(s)	281
HgaI	GACGC	1 cut(s)	552
HhaI	GCGC	1 cut(s)	745
Hin1I	GRCGYC	1 cut(s)	978
Hin6I	GCGC	1 cut(s)	743
HinP1I	GCGC	1 cut(s)	743
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	9 cut(s)	107, 682, 1196, 1472, 1493, 1795, 1913, 2159, 2327
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	2 cut(s)	1301, 1843
Hpy166II	GTNNAC	4 cut(s)	567, 1606, 1773, 1856
Hpy188I	TCNGA	3 cut(s)	226, 1727, 1992
Hpy8I	GTNNAC	4 cut(s)	567, 1606, 1773, 1856
Hpy99I	CGWCG	2 cut(s)	568, 1909
HpyAV	CCTTC	7 cut(s)	442, 1128, 1568, 1726, 1828, 1889, 1978
HpyCH4III	ACNGT	2 cut(s)	571, 1361
HpyCH4IV	ACGT	5 cut(s)	727, 951, 978, 1907, 1938
HpyF3I	CTNAG	9 cut(s)	111, 285, 675, 819, 932, 971, 1296, 1791, 1980
HpySE526I	ACGT	5 cut(s)	727, 951, 978, 1907, 1938
Hsp92I	GRCGYC	1 cut(s)	978
HspAI	GCGC	1 cut(s)	743
Ksp22I	TGATCA	1 cut(s)	2143
Kzo9I	GATC	7 cut(s)	709, 717, 1169, 1689, 1722, 1727, 2143
LguI	GCTCTTC	1 cut(s)	1767
LmnI	GCTCC	3 cut(s)	840, 1757, 2314
MabI	ACCWGGT	1 cut(s)	1225
MaeI	CTAG	5 cut(s)	81, 381, 1260, 1697, 2117
MaeII	ACGT	5 cut(s)	727, 951, 978, 1907, 1938
MaeIII	GTNAC	6 cut(s)	549, 695, 974, 1348, 2047, 2086
MalI	GATC	7 cut(s)	711, 719, 1171, 1691, 1724, 1729, 2145
MbiI	CCGCTC	1 cut(s)	1613
MboI	GATC	7 cut(s)	709, 717, 1169, 1689, 1722, 1727, 2143
MfeI	CAATTG	1 cut(s)	1000
MflI	RGATCY	2 cut(s)	1169, 1689
MhlI	GDGCHC	2 cut(s)	1762, 2097
MlsI	TGGCCA	1 cut(s)	173
MluNI	TGGCCA	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	480, 1890
Mox20I	TGGCCA	1 cut(s)	173
Mph1103I	ATGCAT	1 cut(s)	1526
MroXI	GAANNNNTTC	2 cut(s)	1594, 2240
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	9 cut(s)	86, 290, 396, 890, 1161, 1515, 1619, 1667, 2364
MslI	CAYNNNNRTG	3 cut(s)	1778, 2132, 2177
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	5 cut(s)	269, 281, 1174, 1227, 2156
MunI	CAATTG	1 cut(s)	1000
MvaI	CCWGG	4 cut(s)	269, 1174, 1227, 2156
NciI	CCSGG	1 cut(s)	281
NcoI	CCATGG	2 cut(s)	25, 1189
NdeI	CATATG	1 cut(s)	1201
NdeII	GATC	7 cut(s)	709, 717, 1169, 1689, 1722, 1727, 2143
NlaIV	GGNNCC	2 cut(s)	1171, 1691
NmuCI	GTSAC	2 cut(s)	974, 2047
NsiI	ATGCAT	1 cut(s)	1526
NspI	RCATGY	4 cut(s)	514, 643, 1017, 2018
OliI	CACNNNNGTG	1 cut(s)	2177
PaeI	GCATGC	2 cut(s)	1017, 2018
PaeR7I	CTCGAG	2 cut(s)	273, 852
PagI	TCATGA	1 cut(s)	1924
PceI	AGGCCT	1 cut(s)	1409
PciI	ACATGT	1 cut(s)	639
PciSI	GCTCTTC	1 cut(s)	1767
PdmI	GAANNNNTTC	2 cut(s)	1594, 2240
PfeI	GAWTC	9 cut(s)	107, 682, 1196, 1472, 1493, 1795, 1913, 2159, 2327
PflMI	CCANNNNNTGG	2 cut(s)	1805, 2044
PfoI	TCCNGGA	1 cut(s)	2154
Ple19I	CGATCG	1 cut(s)	1730
Ppu21I	YACGTR	2 cut(s)	728, 952
PscI	ACATGT	1 cut(s)	639
PshBI	ATTAAT	2 cut(s)	890, 1515
Psp124BI	GAGCTC	2 cut(s)	1762, 2097
Psp6I	CCWGG	4 cut(s)	267, 1172, 1225, 2154
PspEI	GGTNACC	1 cut(s)	549
PspFI	CCCAGC	5 cut(s)	95, 545, 1306, 1477, 1685
PspGI	CCWGG	4 cut(s)	267, 1172, 1225, 2154
PspN4I	GGNNCC	2 cut(s)	1171, 1691
PspPI	GGNCC	1 cut(s)	265
PspXI	VCTCGAGB	1 cut(s)	852
PstI	CTGCAG	1 cut(s)	1048
PstNI	CAGNNNCTG	1 cut(s)	560
PsuI	RGATCY	2 cut(s)	1169, 1689
PvuI	CGATCG	1 cut(s)	1730
RsaI	GTAC	5 cut(s)	66, 1772, 2255, 2261, 2282
RsaNI	GTAC	5 cut(s)	65, 1771, 2254, 2260, 2281
RseI	CAYNNNNRTG	3 cut(s)	1778, 2132, 2177
SacI	GAGCTC	2 cut(s)	1762, 2097
SalI	GTCGAC	1 cut(s)	565
SapI	GCTCTTC	1 cut(s)	1767
SaqAI	TTAA	9 cut(s)	86, 290, 396, 890, 1161, 1515, 1619, 1667, 2364
Sau3AI	GATC	7 cut(s)	709, 717, 1169, 1689, 1722, 1727, 2143
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	5 cut(s)	269, 281, 1174, 1227, 2156
SduI	GDGCHC	2 cut(s)	1762, 2097
SexAI	ACCWGGT	1 cut(s)	1225
SfcI	CTRYAG	1 cut(s)	1044
Sfr274I	CTCGAG	2 cut(s)	273, 852
SinI	GGWCC	1 cut(s)	265
SlaI	CTCGAG	2 cut(s)	273, 852
SmiMI	CAYNNNNRTG	3 cut(s)	1778, 2132, 2177
SmlI	CTYRAG	6 cut(s)	273, 443, 686, 852, 1276, 1283
SmoI	CTYRAG	6 cut(s)	273, 443, 686, 852, 1276, 1283
SnaBI	TACGTA	1 cut(s)	952
SphI	GCATGC	2 cut(s)	1017, 2018
SseBI	AGGCCT	1 cut(s)	1409
SsiI	CCGC	4 cut(s)	410, 1072, 1092, 1611
SspMI	CTAG	5 cut(s)	81, 381, 1260, 1697, 2117
SstI	GAGCTC	2 cut(s)	1762, 2097
StuI	AGGCCT	1 cut(s)	1409
StyD4I	CCNGG	5 cut(s)	267, 279, 1172, 1225, 2154
StyI	CCWWGG	6 cut(s)	25, 380, 655, 1189, 1431, 1500
TaaI	ACNGT	2 cut(s)	571, 1361
TaiI	ACGT	5 cut(s)	730, 954, 981, 1910, 1941
TaqI	TCGA	7 cut(s)	118, 242, 274, 566, 720, 853, 1730
TatI	WGTACW	4 cut(s)	64, 1770, 2253, 2259
TfiI	GAWTC	9 cut(s)	107, 682, 1196, 1472, 1493, 1795, 1913, 2159, 2327
Tru1I	TTAA	9 cut(s)	86, 290, 396, 890, 1161, 1515, 1619, 1667, 2364
Tru9I	TTAA	9 cut(s)	86, 290, 396, 890, 1161, 1515, 1619, 1667, 2364
TscAI	CASTG	4 cut(s)	443, 1119, 1725, 2056
TseFI	GTSAC	2 cut(s)	974, 2047
Tsp45I	GTSAC	2 cut(s)	974, 2047
TspGWI	ACGGA	2 cut(s)	884, 934
TspRI	CASTG	4 cut(s)	443, 1119, 1725, 2056
Van91I	CCANNNNNTGG	2 cut(s)	1805, 2044
VpaK11BI	GGWCC	1 cut(s)	265
VspI	ATTAAT	2 cut(s)	890, 1515
XapI	RAATTY	4 cut(s)	1025, 1270, 2138, 2315
XceI	RCATGY	4 cut(s)	514, 643, 1017, 2018
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1151
XhoI	CTCGAG	2 cut(s)	273, 852
XmaJI	CCTAGG	1 cut(s)	380
XmiI	GTMKAC	2 cut(s)	566, 1605
XmnI	GAANNNNTTC	2 cut(s)	1594, 2240
XspI	CTAG	5 cut(s)	81, 381, 1260, 1697, 2117
ZraI	GACGTC	1 cut(s)	979
Zsp2I	ATGCAT	1 cut(s)	1526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.