MD11G1297400.v1.1

breast cancer carboxy-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011125
Physical Location & Seq
Reverse (-)
41482193 .. 41483233
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1297400.v1.1.491

Sequence Viewer

Length: 264 bp
ATGATGATTAGCTTGGTGAAGGCAGTTCAAGGCCAGCCAGTGAAGAAGGTTCAGATGTCTGCAGCAAAAGATAAAAAGAATTTCAAGGACGTTTTGATGCTTTCTTGCGAAGAAGACCGTGCGGTCTGCCTGCCTTTTCTTGAGCAAGGGGCAGCAGCTTACAGTTCAGAACTTCTGCTAAATGGTATTGTTATCCAGAGACTGGAATACAAGAGACATCGGCTCTTCACAACTGAAGTTAGAGGAGTTGTCCACCGGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RTT107_BRCT_5

Protein Analysis

88

Amino Acids

9.86

Weight (kDa)

9.51

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRCT_2 PF16589 2 - 70 1.7e-10 BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03130 AT4G03130 AT4G03130 AT4G03130
fragaria_vesca FvH4_2g24660
malus_domestica MD11G1297400.v1.1 MD11G1297500.v1.1
prunus_persica Prupe.8G251900_v2.0.a1 Prupe.8G251900_v2.0.a1
pyrus_communis pycom11g26140
rosa_chinensis RchiOBHm_Chr6g0292491
rosa_laevigata RLG00000012019
rosa_multiflora Rmu_sc0001354.1_g000027
rosa_roxburghii Rroxscaffold_7G00175010
rosa_rugosa Rorug06G0227200
rosa_samantha Rh6AG340400 Rh6BG347700 Rh6CG354700 Rh6DG340500
rosa_wichuraiana Rw6G029640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 202
AciI CCGC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 2 cut(s) 29, 85
AluBI AGCT 2 cut(s) 12, 158
AluI AGCT 2 cut(s) 12, 158
Alw26I GTCTC 2 cut(s) 193, 208
AlwNI CAGNNNCTG 1 cut(s) 202
AoxI GGCC 2 cut(s) 31, 257
ApeKI GCWGC 3 cut(s) 62, 152, 155
ApoI RAATTY 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 74, 164, 167
BcoDI GTCTC 2 cut(s) 193, 208
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 3 cut(s) 63, 153, 156
BlsI GCNGC 3 cut(s) 64, 154, 157
BmsI GCATC 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse118I RCCGGY 1 cut(s) 255
Bse1I ACTGG 2 cut(s) 38, 207
BseLI CCNNNNNNNGG 1 cut(s) 202
BseNI ACTGG 2 cut(s) 38, 207
BseRI GAGGAG 1 cut(s) 258
BseXI GCAGC 3 cut(s) 74, 164, 167
BshFI GGCC 2 cut(s) 33, 259
BsiSI CCGG 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 2 cut(s) 193, 208
BsnI GGCC 2 cut(s) 33, 259
BspACI CCGC 1 cut(s) 122
BspANI GGCC 2 cut(s) 33, 259
BspMAI CTGCAG 1 cut(s) 64
BspQI GCTCTTC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 255
BsrI ACTGG 2 cut(s) 38, 207
BssAI RCCGGY 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 119, 164
Bst6I CTCTTC 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 35, 131
BstDEI CTNAG 1 cut(s) 261
BstMAI GTCTC 2 cut(s) 193, 208
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 74, 164, 167
BstV2I GAAGAC 1 cut(s) 120
BsuRI GGCC 2 cut(s) 33, 259
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 35, 131
CaiI CAGNNNCTG 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 255
CviJI RGCY 6 cut(s) 12, 33, 37, 158, 223, 259
CviKI_1 RGCY 6 cut(s) 12, 33, 37, 158, 223, 259
DdeI CTNAG 1 cut(s) 261
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 63, 153, 156
Fsp4HI GCNGC 3 cut(s) 63, 153, 156
GluI GCNGC 3 cut(s) 63, 153, 156
HaeIII GGCC 2 cut(s) 33, 259
HapII CCGG 1 cut(s) 256
HpaII CCGG 1 cut(s) 256
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 54, 169
Hpy188III TCNNGA 2 cut(s) 140, 196
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 2 cut(s) 13, 40
HpyCH4III ACNGT 2 cut(s) 119, 164
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 90
LguI GCTCTTC 1 cut(s) 230
LpnPI CCDG 5 cut(s) 47, 51, 143, 188, 209
Lsp1109I GCAGC 3 cut(s) 74, 164, 167
LweI GCATC 1 cut(s) 87
MaeII ACGT 1 cut(s) 90
MboII GAAGA 4 cut(s) 55, 122, 125, 217
MluCI AATT 1 cut(s) 79
MnlI CCTC 1 cut(s) 236
MspI CCGG 1 cut(s) 256
PciSI GCTCTTC 1 cut(s) 230
PflMI CCANNNNNTGG 1 cut(s) 202
PkrI GCNGC 3 cut(s) 64, 154, 157
PstI CTGCAG 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 202
SapI GCTCTTC 1 cut(s) 230
SatI GCNGC 3 cut(s) 63, 153, 156
SetI ASST 4 cut(s) 14, 51, 93, 160
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 1 cut(s) 79
SsiI CCGC 1 cut(s) 122
TaaI ACNGT 2 cut(s) 119, 164
TaiI ACGT 1 cut(s) 93
TasI AATT 1 cut(s) 79
TscAI CASTG 1 cut(s) 45
TseI GCWGC 3 cut(s) 62, 152, 155
TspRI CASTG 1 cut(s) 45
Van91I CCANNNNNTGG 1 cut(s) 202
XapI RAATTY 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.