Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0012197

Physical Location & Seq

Genomic Coordinates Forward (+)

7098425 .. 7100785

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1061100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCAGGGATTGGCTGTTGCTGTACAACTCTGTCGTCCACAAGCAATCTCCACACATCTTGGTTGAAATTTGAGACTCGTACTCATGGTGAAGGAACCATCTTAGGGCAACCAACCCGTCCTCGTCGGAATTTCTCAATCAGAGCAGAAGTGAATTTTGTAAGTGCAGAAGAAGCAAAAGAACTTATTGCAGTCGAGGGATATACTGTCATTGATGTCCGGGACAAATCTCAGTACGAACGAGCTCATATCAAATCTTGCCATCATGTGCCTCTCTTCATTGAAAACCAAGACAATGATTTTGGAACAATCATAAAGAGGACTCTCCACAACAATTTTTCTGGTCTTTTCTATGGGTTGCCTTTTACCAAACCGAACCCTGAATTTGTAGAGTCAGTAAAAAACCGGTTCTCACCTGAAAGTAAACTGTTACTGGTGTGTCAGGAAGGATTGAGGTCTACTGCTGCTGCTGATAAGTTGGAGCAAGCGGGTTTCGAAAACATAGCGTGTATAACTTCGGGTCTTCAAAGCATAAAACAAGGAGCATTTGATTCCGTTGGTTCGACGGAGTTGCAAAATGCCGGCAAAGCCGGATTAGTCACTATTCAGGGAAAGATCTCGGCTGTACTTGGAACTGTGCTAATCTGTGCATATTTGTTCATCACCTTCTTCCCCGATCAAGCAGAGAAGCTACTCGCAATTTTCACGACCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

239

Amino Acids

26.13

Weight (kDa)

6.59

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	55 - 179	1.2e-11	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42220
fragaria_vesca	FvH4_6g22700 FvH4_6g22700 FvH4_6g22700
malus_domestica	MD12G1061100.v1.1 MD14G1060800.v1.1
prunus_persica	Prupe.7G073600_v2.0.a1 Prupe.7G073600_v2.0.a1
pyrus_communis	pycom12g05400
rosa_chinensis	RchiOBHm_Chr3g0480311
rosa_laevigata	RLG00000023493
rosa_multiflora	Rmu_ssc0000353.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401570
rosa_rugosa	Rorug03G0182400
rosa_samantha	Rh3AG234300 Rh3BG266600 Rh3CG264100 Rh3DG259600
rosa_wichuraiana	Rw3G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	458
AciI	CCGC	1 cut(s)	488
AcsI	RAATTY	4 cut(s)	68, 130, 154, 383
AfaI	GTAC	4 cut(s)	25, 82, 236, 627
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgeI	ACCGGT	1 cut(s)	405
AgsI	TTSAA	3 cut(s)	67, 284, 527
AluBI	AGCT	2 cut(s)	245, 691
AluI	AGCT	2 cut(s)	245, 691
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	464, 467
ApoI	RAATTY	4 cut(s)	68, 130, 154, 383
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AsiGI	ACCGGT	1 cut(s)	405
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	101, 405, 655
AsuII	TTCGAA	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	451, 454
BccI	CCATC	2 cut(s)	107, 270
BcgI	CGANNNNNNTGC	2 cut(s)	553, 587
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	715
BglII	AGATCT	1 cut(s)	615
BisI	GCNGC	2 cut(s)	465, 468
BlsI	GCNGC	2 cut(s)	466, 469
Bme1390I	CCNGG	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	515
Bpu14I	TTCGAA	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse118I	RCCGGY	2 cut(s)	405, 581
Bse1I	ACTGG	1 cut(s)	438
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	438
BseXI	GCAGC	2 cut(s)	451, 454
BsgI	GTGCAG	1 cut(s)	186
BshTI	ACCGGT	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	4 cut(s)	220, 406, 582, 591
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	236
Bsp119I	TTCGAA	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp1407I	TGTACA	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	615, 676
BspACI	CCGC	1 cut(s)	488
BspCNI	CTCAG	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	97
BspT104I	TTCGAA	1 cut(s)	495
BsrFI	RCCGGY	2 cut(s)	405, 581
BsrGI	TGTACA	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	438
BssAI	RCCGGY	2 cut(s)	405, 581
BssMI	GATC	2 cut(s)	615, 676
Bst4CI	ACNGT	3 cut(s)	208, 429, 637
Bst6I	CTCTTC	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	495
BstC8I	GCNNGC	2 cut(s)	486, 583
BstDEI	CTNAG	2 cut(s)	103, 231
BstKTI	GATC	2 cut(s)	618, 679
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	2 cut(s)	615, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 587
BstSCI	CCNGG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	451, 454
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	615
BstYI	RGATCY	1 cut(s)	615
Cac8I	GCNNGC	2 cut(s)	486, 583
Cfr10I	RCCGGY	2 cut(s)	405, 581
Csp6I	GTAC	4 cut(s)	24, 81, 235, 626
CspAI	ACCGGT	1 cut(s)	405
CspCI	CAANNNNNGTGG	2 cut(s)	41, 76
CviAII	CATG	2 cut(s)	86, 266
CviJI	RGCY	5 cut(s)	15, 245, 590, 623, 691
CviKI_1	RGCY	5 cut(s)	15, 245, 590, 623, 691
CviQI	GTAC	4 cut(s)	24, 81, 235, 626
DdeI	CTNAG	2 cut(s)	103, 231
DpnI	GATC	2 cut(s)	617, 678
DpnII	GATC	2 cut(s)	615, 676
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	247
FaeI	CATG	2 cut(s)	89, 269
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	2 cut(s)	85, 265
FauI	CCCGC	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	2 cut(s)	465, 468
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	2 cut(s)	465, 468
FspBI	CTAG	1 cut(s)	715
GluI	GCNGC	2 cut(s)	465, 468
HapII	CCGG	4 cut(s)	220, 406, 582, 591
Hin1II	CATG	2 cut(s)	89, 269
HinfI	GANTC	4 cut(s)	76, 322, 392, 551
HpaII	CCGG	4 cut(s)	220, 406, 582, 591
HphI	GGTGA	3 cut(s)	101, 405, 655
Hpy166II	GTNNAC	3 cut(s)	39, 425, 459
Hpy188I	TCNGA	2 cut(s)	129, 143
Hpy188III	TCNNGA	2 cut(s)	443, 706
Hpy8I	GTNNAC	3 cut(s)	39, 425, 459
Hpy99I	CGWCG	2 cut(s)	129, 568
HpyAV	CCTTC	3 cut(s)	86, 440, 676
HpyCH4III	ACNGT	3 cut(s)	208, 429, 637
HpyCH4V	TGCA	4 cut(s)	167, 191, 574, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 587
HpyF3I	CTNAG	2 cut(s)	103, 231
Hsp92II	CATG	2 cut(s)	89, 269
KroI	GCCGGC	1 cut(s)	581
KroNI	GCCGGC	1 cut(s)	583
Kzo9I	GATC	2 cut(s)	615, 676
LmnI	GCTCC	2 cut(s)	481, 542
Lsp1109I	GCAGC	2 cut(s)	451, 454
MaeI	CTAG	1 cut(s)	715
MaeIII	GTNAC	2 cut(s)	429, 598
MalI	GATC	2 cut(s)	617, 678
MboI	GATC	2 cut(s)	615, 676
MboII	GAAGA	4 cut(s)	182, 268, 515, 661
MflI	RGATCY	1 cut(s)	615
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	6 cut(s)	68, 130, 154, 334, 383, 699
MlyI	GAGTC	3 cut(s)	70, 316, 401
MmeI	TCCRAC	2 cut(s)	107, 459
MnlI	CCTC	5 cut(s)	132, 190, 282, 312, 447
MroNI	GCCGGC	1 cut(s)	581
MspI	CCGG	4 cut(s)	220, 406, 582, 591
MspR9I	CCNGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	173, 587
NaeI	GCCGGC	1 cut(s)	583
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	2 cut(s)	615, 676
NgoMIV	GCCGGC	1 cut(s)	581
NlaIII	CATG	2 cut(s)	89, 269
NlaIV	GGNNCC	1 cut(s)	97
NmeAIII	GCCGAG	1 cut(s)	599
NmuCI	GTSAC	1 cut(s)	598
NspV	TTCGAA	1 cut(s)	495
PdiI	GCCGGC	1 cut(s)	583
PfeI	GAWTC	1 cut(s)	551
PfoI	TCCNGGA	1 cut(s)	219
PinAI	ACCGGT	1 cut(s)	405
PkrI	GCNGC	2 cut(s)	466, 469
PleI	GAGTC	3 cut(s)	70, 316, 400
PpsI	GAGTC	3 cut(s)	70, 316, 400
Psp124BI	GAGCTC	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	615
RsaI	GTAC	4 cut(s)	25, 82, 236, 627
RsaNI	GTAC	4 cut(s)	24, 81, 235, 626
SacI	GAGCTC	1 cut(s)	247
SatI	GCNGC	2 cut(s)	465, 468
Sau3AI	GATC	2 cut(s)	615, 676
SchI	GAGTC	3 cut(s)	70, 316, 401
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	6 cut(s)	247, 418, 458, 668, 693, 716
SfuI	TTCGAA	1 cut(s)	495
Sse9I	AATT	6 cut(s)	68, 130, 154, 334, 383, 699
SsiI	CCGC	1 cut(s)	488
SspMI	CTAG	1 cut(s)	715
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	208, 429, 637
TaqI	TCGA	3 cut(s)	195, 495, 563
TasI	AATT	6 cut(s)	68, 130, 154, 334, 383, 699
TatI	WGTACW	2 cut(s)	23, 625
TfiI	GAWTC	1 cut(s)	551
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	2 cut(s)	464, 467
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	2 cut(s)	268, 649
TspGWI	ACGGA	2 cut(s)	544, 581
XapI	RAATTY	4 cut(s)	68, 130, 154, 383
XmiI	GTMKAC	1 cut(s)	458
XspI	CTAG	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.