Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000353.1

Orthogroup ID

OG0012197

Physical Location & Seq

Genomic Coordinates Forward (+)

45 .. 1636

Gene Structure 1592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000353.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggcagggattgcgtttggcacttgctgttcaactatctcttccaccagcaatttccccacttcttggttgaaacttgagactcgtactcatcgtggaggaaccatcttaaagaagccaaacagtgttagaactctggcaattagagcagaagtgaactttgtaaatgcagacgaagctaaagaactaattgcagaaggatatacggttattgatgttcgggacaaatctcaatacgatcgagctcatatcaaatcatgttatcatgtgcctcttttcattgaaaatcaggacaatgacatcggcacaattgtaaagaggactgtgcacaacaatttctcaggtctgttcttcgggttacctttcactaaacccaaccctgagtttgtacaatctgttaaaggccagttttcacctcagagtaaactgttactggtgtgccaggaaggattgaggtctgctgctgctgctagtaagttggagcaggctggtttccaagacatagcatgtataacatcagggctgcaaaaagtaaaaccaggagcatttgatgctgttggatccactgagttgcaagatgctggcaaagcaggtttgatcacagtacaaggaaagatctcagctgtacttggaactgtactagtctgtgcatatttgttcatcaccttcttccctgatcaagcagagaagctacttcaattggctcctacaggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

238

Amino Acids

25.72

Weight (kDa)

8.5

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42220
fragaria_vesca	FvH4_6g22700 FvH4_6g22700 FvH4_6g22700
malus_domestica	MD12G1061100.v1.1 MD14G1060800.v1.1
prunus_persica	Prupe.7G073600_v2.0.a1 Prupe.7G073600_v2.0.a1
pyrus_communis	pycom12g05400
rosa_chinensis	RchiOBHm_Chr3g0480311
rosa_laevigata	RLG00000023493
rosa_multiflora	Rmu_ssc0000353.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401570
rosa_rugosa	Rorug03G0182400
rosa_samantha	Rh3AG234300 Rh3BG266600 Rh3CG264100 Rh3DG259600
rosa_wichuraiana	Rw3G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	581
AccB7I	CCANNNNNTGG	1 cut(s)	66
AclWI	GGATC	2 cut(s)	555, 568
AfaI	GTAC	5 cut(s)	88, 390, 606, 627, 639
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	4 cut(s)	33, 73, 284, 698
AhlI	ACTAGT	1 cut(s)	640
AjnI	CCWGG	2 cut(s)	441, 538
AluBI	AGCT	4 cut(s)	179, 245, 623, 691
AluI	AGCT	4 cut(s)	179, 245, 623, 691
Alw21I	GWGCWC	2 cut(s)	247, 330
Alw26I	GTCTC	1 cut(s)	74
Alw44I	GTGCAC	1 cut(s)	326
AlwI	GGATC	2 cut(s)	555, 568
AoxI	GGCC	1 cut(s)	403
ApaLI	GTGCAC	1 cut(s)	326
ApeKI	GCWGC	4 cut(s)	461, 464, 467, 523
AsuHPI	GGTGA	2 cut(s)	405, 655
BaeGI	GKGCMC	1 cut(s)	330
BamHI	GGATCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	2 cut(s)	247, 330
BbvI	GCAGC	4 cut(s)	448, 451, 454, 510
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	2 cut(s)	443, 540
BclI	TGATCA	2 cut(s)	597, 676
BcoDI	GTCTC	1 cut(s)	74
BcuI	ACTAGT	1 cut(s)	640
BfaI	CTAG	3 cut(s)	471, 641, 715
BfmI	CTRYAG	1 cut(s)	708
BfuAI	ACCTGC	1 cut(s)	581
BglII	AGATCT	1 cut(s)	615
BisI	GCNGC	4 cut(s)	462, 465, 468, 524
BlsI	GCNGC	4 cut(s)	463, 466, 469, 525
Bme1390I	CCNGG	2 cut(s)	443, 540
BmiI	GGNNCC	3 cut(s)	103, 562, 705
BmrFI	CCNGG	2 cut(s)	443, 540
BmsI	GCATC	2 cut(s)	541, 568
BpuEI	CTTGAG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	406, 438
BseBI	CCWGG	2 cut(s)	443, 540
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	5 cut(s)	354, 372, 431, 558, 633
BseNI	ACTGG	2 cut(s)	406, 438
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	4 cut(s)	448, 451, 454, 510
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	1 cut(s)	405
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	2 cut(s)	247, 330
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	405
Bsp1286I	GDGCHC	2 cut(s)	247, 330
Bsp1407I	TGTACA	1 cut(s)	388
Bsp143I	GATC	5 cut(s)	238, 560, 597, 615, 676
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	5 cut(s)	353, 373, 430, 559, 632
BspLI	GGNNCC	3 cut(s)	103, 562, 705
BspMI	ACCTGC	1 cut(s)	581
BspPI	GGATC	2 cut(s)	555, 568
BsrGI	TGTACA	1 cut(s)	388
BsrI	ACTGG	2 cut(s)	406, 438
BssMI	GATC	5 cut(s)	238, 560, 597, 615, 676
Bst2UI	CCWGG	2 cut(s)	443, 540
Bst4CI	ACNGT	6 cut(s)	125, 208, 325, 429, 604, 637
Bst6I	CTCTTC	1 cut(s)	46
BstAPI	GCANNNNNTGC	2 cut(s)	11, 551
BstAUI	TGTACA	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	486, 583
BstDEI	CTNAG	5 cut(s)	340, 381, 417, 567, 619
BstEII	GGTNACC	1 cut(s)	357
BstKTI	GATC	5 cut(s)	241, 563, 600, 618, 679
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	5 cut(s)	238, 560, 597, 615, 676
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 146, 176, 467, 551, 587
BstNI	CCWGG	2 cut(s)	443, 540
BstNSI	RCATGY	1 cut(s)	510
BstPI	GGTNACC	1 cut(s)	357
BstSCI	CCNGG	2 cut(s)	441, 538
BstSFI	CTRYAG	1 cut(s)	708
BstSLI	GKGCMC	1 cut(s)	330
BstV1I	GCAGC	4 cut(s)	448, 451, 454, 510
BstX2I	RGATCY	2 cut(s)	560, 615
BstYI	RGATCY	2 cut(s)	560, 615
BsuRI	GGCC	1 cut(s)	405
BtsIMutI	CAGTG	2 cut(s)	130, 564
BveI	ACCTGC	1 cut(s)	581
Cac8I	GCNNGC	2 cut(s)	486, 583
Csp6I	GTAC	5 cut(s)	87, 389, 605, 626, 638
CviAII	CATG	3 cut(s)	258, 266, 507
CviQI	GTAC	5 cut(s)	87, 389, 605, 626, 638
DdeI	CTNAG	5 cut(s)	340, 381, 417, 567, 619
DpnI	GATC	5 cut(s)	240, 562, 599, 617, 678
DpnII	GATC	5 cut(s)	238, 560, 597, 615, 676
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	357
EcoICRI	GAGCTC	1 cut(s)	245
EcoO65I	GGTNACC	1 cut(s)	357
EcoRII	CCWGG	2 cut(s)	441, 538
EcoT38I	GRGCYC	1 cut(s)	247
FaeI	CATG	3 cut(s)	261, 269, 510
FaiI	YATR	8 cut(s)	204, 249, 259, 267, 503, 508, 512, 652
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	3 cut(s)	257, 265, 506
FbaI	TGATCA	2 cut(s)	597, 676
Fnu4HI	GCNGC	4 cut(s)	462, 465, 468, 524
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	4 cut(s)	462, 465, 468, 524
FspBI	CTAG	3 cut(s)	471, 641, 715
GluI	GCNGC	4 cut(s)	462, 465, 468, 524
HaeIII	GGCC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	261, 269, 510
HinfI	GANTC	1 cut(s)	82
HphI	GGTGA	2 cut(s)	405, 655
Hpy166II	GTNNAC	3 cut(s)	157, 328, 425
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	2 cut(s)	221, 290
Hpy8I	GTNNAC	3 cut(s)	157, 328, 425
HpyAV	CCTTC	3 cut(s)	191, 440, 676
HpyCH4III	ACNGT	6 cut(s)	125, 208, 325, 429, 604, 637
HpyCH4V	TGCA	6 cut(s)	170, 194, 328, 526, 574, 650
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 146, 176, 467, 551, 587
HpyF3I	CTNAG	5 cut(s)	340, 381, 417, 567, 619
Hsp92II	CATG	3 cut(s)	261, 269, 510
Ksp22I	TGATCA	2 cut(s)	597, 676
Kzo9I	GATC	5 cut(s)	238, 560, 597, 615, 676
LmnI	GCTCC	3 cut(s)	481, 542, 709
Lsp1109I	GCAGC	4 cut(s)	448, 451, 454, 510
LweI	GCATC	2 cut(s)	541, 568
MaeI	CTAG	3 cut(s)	471, 641, 715
MaeIII	GTNAC	2 cut(s)	357, 429
MalI	GATC	5 cut(s)	240, 562, 599, 617, 678
MboI	GATC	5 cut(s)	238, 560, 597, 615, 676
MboII	GAAGA	3 cut(s)	33, 343, 661
MfeI	CAATTG	2 cut(s)	309, 698
MflI	RGATCY	2 cut(s)	560, 615
MhlI	GDGCHC	2 cut(s)	247, 330
MluCI	AATT	6 cut(s)	52, 141, 189, 309, 334, 698
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	2 cut(s)	459, 538
MnlI	CCTC	5 cut(s)	92, 282, 312, 426, 447
MseI	TTAA	2 cut(s)	110, 399
MspA1I	CMGCKG	1 cut(s)	623
MspR9I	CCNGG	2 cut(s)	443, 540
MunI	CAATTG	2 cut(s)	309, 698
MvaI	CCWGG	2 cut(s)	443, 540
MwoI	GCNNNNNNNGC	6 cut(s)	11, 146, 176, 467, 551, 587
NdeII	GATC	5 cut(s)	238, 560, 597, 615, 676
NlaIII	CATG	3 cut(s)	261, 269, 510
NlaIV	GGNNCC	3 cut(s)	103, 562, 705
NspI	RCATGY	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	91
PflMI	CCANNNNNTGG	1 cut(s)	66
PkrI	GCNGC	4 cut(s)	463, 466, 469, 525
Ple19I	CGATCG	1 cut(s)	241
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	441, 538
PspEI	GGTNACC	1 cut(s)	357
PspGI	CCWGG	2 cut(s)	441, 538
PspN4I	GGNNCC	3 cut(s)	103, 562, 705
PsuI	RGATCY	2 cut(s)	560, 615
PvuI	CGATCG	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	5 cut(s)	88, 390, 606, 627, 639
RsaNI	GTAC	5 cut(s)	87, 389, 605, 626, 638
SacI	GAGCTC	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	110, 399
SatI	GCNGC	4 cut(s)	462, 465, 468, 524
Sau3AI	GATC	5 cut(s)	238, 560, 597, 615, 676
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	2 cut(s)	443, 540
SduI	GDGCHC	2 cut(s)	247, 330
SfaNI	GCATC	2 cut(s)	541, 568
SfcI	CTRYAG	1 cut(s)	708
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SpeI	ACTAGT	1 cut(s)	640
Sse9I	AATT	6 cut(s)	52, 141, 189, 309, 334, 698
SspMI	CTAG	3 cut(s)	471, 641, 715
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	2 cut(s)	441, 538
TaaI	ACNGT	6 cut(s)	125, 208, 325, 429, 604, 637
TaqI	TCGA	1 cut(s)	241
TasI	AATT	6 cut(s)	52, 141, 189, 309, 334, 698
TatI	WGTACW	4 cut(s)	388, 604, 625, 637
Tru1I	TTAA	2 cut(s)	110, 399
Tru9I	TTAA	2 cut(s)	110, 399
TscAI	CASTG	2 cut(s)	130, 571
TseI	GCWGC	4 cut(s)	461, 464, 467, 523
TspDTI	ATGAA	2 cut(s)	268, 649
TspRI	CASTG	2 cut(s)	130, 571
Van91I	CCANNNNNTGG	1 cut(s)	66
VneI	GTGCAC	1 cut(s)	326
XceI	RCATGY	1 cut(s)	510
XspI	CTAG	3 cut(s)	471, 641, 715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.