Prupe.7G073600_v2.0.a1

Rhodanese-like domain-containing protein 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012197
Physical Location & Seq
Reverse (-)
11127055 .. 11129300
2246 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G073600.1

Sequence Viewer

Length: 723 bp
ATGGCAGCCTTGGCAGGGATTGGCTCTTGTTGTTCAACTCTCTCTTCCACAAGCAATTTCCGCACATCTTGGTTGAAATTTGAGACTCAAACTCATGGTGGAGGAACCATCTTAGGGATATCATACCGTCGTCGAACTTTGGCCATTAGAGCAGAAGTGAATTTTGTGACTGCAGAAGAAGCAAAAGAACTTATTGCAGTTGATGGATACACAGTTGTTGATGTTCGGGACAAATCTCAATTTGAACGAGCTCACATCAAATCATGCCATCATGTCCCTCTTTTCATTGCAAACGAAGACAATGACCCCGGCACAATCATAAAGAGGACTCTCCACAACAACTTTTCTGGTCTGTTCTATGGGTTGCCTTTCACTAAACCCAACCCTGAATTTGTACAATCTGTTAAATCCCAGTTTTCACCTCAAAGTAAACTGTTACTGGTGTGCCAGGAAGGATTGAGGTCTACTGCTGCTGCCAATAAGTTGGAGCAAGCCGGGTTCGAAAACATAGCATGTATGACGTCAGGACTTCAATCCGTAAAACCAGGAGCATTTGATTCTGTTGGTTCCACGGAGTTGCAAAATGCCGGCAAAGCTGGTTTAGTCACCGTTCAAGGGAAGATTTCAGCTGTACTTGGAACAGTACTAATCTGTGCATACTTATTCATCACTTTCTTCCCCGATCAAGCCGAGAAGATACTCCAAATTTTCCAGACCACCTAG

Protein Analysis

241

Amino Acids

26.03

Weight (kDa)

8.2

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42220
fragaria_vesca FvH4_6g22700 FvH4_6g22700 FvH4_6g22700
malus_domestica MD12G1061100.v1.1 MD14G1060800.v1.1
prunus_persica Prupe.7G073600_v2.0.a1 Prupe.7G073600_v2.0.a1
pyrus_communis pycom12g05400
rosa_chinensis RchiOBHm_Chr3g0480311
rosa_laevigata RLG00000023493
rosa_multiflora Rmu_ssc0000353.1_g000001
rosa_roxburghii Rroxscaffold_6G00401570
rosa_rugosa Rorug03G0182400
rosa_samantha Rh3AG234300 Rh3BG266600 Rh3CG264100 Rh3DG259600
rosa_wichuraiana Rw3G021030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 524
AccI GTMKAC 1 cut(s) 464
AciI CCGC 1 cut(s) 61
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 4 cut(s) 77, 160, 389, 705
AcyI GRCGYC 1 cut(s) 521
AfaI GTAC 3 cut(s) 396, 633, 645
AfiI CCNNNNNNNGG 3 cut(s) 15, 114, 615
AgsI TTSAA 5 cut(s) 36, 76, 245, 533, 614
AjnI CCWGG 2 cut(s) 447, 544
AluBI AGCT 3 cut(s) 251, 596, 629
AluI AGCT 3 cut(s) 251, 596, 629
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 3 cut(s) 5, 470, 473
ApoI RAATTY 4 cut(s) 77, 160, 389, 705
AsuC2I CCSGG 2 cut(s) 309, 496
AsuHPI GGTGA 2 cut(s) 411, 598
AsuII TTCGAA 1 cut(s) 501
BalI TGGCCA 1 cut(s) 143
BanII GRGCYC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 3 cut(s) 17, 457, 460
BccI CCATC 3 cut(s) 116, 197, 276
BciT130I CCWGG 2 cut(s) 449, 546
BciVI GTATCC 1 cut(s) 200
BcnI CCSGG 2 cut(s) 309, 496
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 721
BfmI CTRYAG 1 cut(s) 171
BfuI GTATCC 1 cut(s) 200
BisI GCNGC 3 cut(s) 6, 471, 474
BlsI GCNGC 3 cut(s) 7, 472, 475
BmcAI AGTACT 1 cut(s) 645
Bme1390I CCNGG 4 cut(s) 309, 449, 496, 546
BmiI GGNNCC 2 cut(s) 106, 568
BmrFI CCNGG 4 cut(s) 309, 449, 496, 546
BmrI ACTGGG 1 cut(s) 406
BmuI ACTGGG 1 cut(s) 406
BpiI GAAGAC 1 cut(s) 303
Bpu14I TTCGAA 1 cut(s) 501
BpuMI CCSGG 2 cut(s) 309, 496
BsaHI GRCGYC 1 cut(s) 521
BsaJI CCNNGG 3 cut(s) 9, 307, 570
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 114, 615
Bse118I RCCGGY 1 cut(s) 587
Bse1I ACTGG 2 cut(s) 412, 444
Bse3DI GCAATG 1 cut(s) 285
BseBI CCWGG 2 cut(s) 449, 546
BseDI CCNNGG 3 cut(s) 9, 307, 570
BseLI CCNNNNNNNGG 3 cut(s) 15, 114, 615
BseMI GCAATG 1 cut(s) 285
BseNI ACTGG 2 cut(s) 412, 444
BseXI GCAGC 3 cut(s) 17, 457, 460
BshFI GGCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 3 cut(s) 309, 495, 588
BslFI GGGAC 2 cut(s) 242, 260
BslI CCNNNNNNNGG 3 cut(s) 15, 114, 615
BsmAI GTCTC 1 cut(s) 77
BsmFI GGGAC 2 cut(s) 242, 260
BsnI GGCC 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 501
Bsp1286I GDGCHC 1 cut(s) 253
Bsp1407I TGTACA 1 cut(s) 394
Bsp143I GATC 1 cut(s) 682
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 106, 568
BspMAI CTGCAG 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 501
BsrDI GCAATG 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 587
BsrGI TGTACA 1 cut(s) 394
BsrI ACTGG 2 cut(s) 412, 444
BssAI RCCGGY 1 cut(s) 587
BssECI CCNNGG 3 cut(s) 9, 307, 570
BssMI GATC 1 cut(s) 682
BssNI GRCGYC 1 cut(s) 521
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 449, 546
Bst4CI ACNGT 5 cut(s) 128, 214, 435, 610, 643
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 1 cut(s) 521
BstAUI TGTACA 1 cut(s) 394
BstBI TTCGAA 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 492, 589
BstDEI CTNAG 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 570
BstKTI GATC 1 cut(s) 685
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 1 cut(s) 682
BstMWI GCNNNNNNNGC 5 cut(s) 11, 60, 149, 179, 593
BstNI CCWGG 2 cut(s) 449, 546
BstNSI RCATGY 1 cut(s) 516
BstSCI CCNGG 4 cut(s) 307, 447, 494, 544
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 3 cut(s) 17, 457, 460
BstV2I GAAGAC 1 cut(s) 303
BstXI CCANNNNNNTGG 1 cut(s) 484
BsuI GTATCC 1 cut(s) 200
BsuRI GGCC 1 cut(s) 143
BtgI CCRYGG 1 cut(s) 570
Cac8I GCNNGC 2 cut(s) 492, 589
Cfr10I RCCGGY 1 cut(s) 587
Csp6I GTAC 3 cut(s) 395, 632, 644
CviAII CATG 4 cut(s) 95, 264, 272, 513
CviJI RGCY 8 cut(s) 8, 24, 143, 251, 494, 596, 629, 689
CviKI_1 RGCY 8 cut(s) 8, 24, 143, 251, 494, 596, 629, 689
CviQI GTAC 3 cut(s) 395, 632, 644
DdeI CTNAG 1 cut(s) 112
DpnI GATC 1 cut(s) 684
DpnII GATC 1 cut(s) 682
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 253
Eco32I GATATC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 447, 544
EcoRV GATATC 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 4 cut(s) 98, 267, 275, 516
FaqI GGGAC 2 cut(s) 242, 260
FatI CATG 4 cut(s) 94, 263, 271, 512
FblI GTMKAC 1 cut(s) 464
Fnu4HI GCNGC 3 cut(s) 6, 471, 474
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 3 cut(s) 6, 471, 474
FspBI CTAG 1 cut(s) 721
GluI GCNGC 3 cut(s) 6, 471, 474
HaeIII GGCC 1 cut(s) 143
HapII CCGG 3 cut(s) 309, 495, 588
Hin1I GRCGYC 1 cut(s) 521
Hin1II CATG 4 cut(s) 98, 267, 275, 516
HinfI GANTC 3 cut(s) 85, 328, 557
HpaII CCGG 3 cut(s) 309, 495, 588
HphI GGTGA 2 cut(s) 411, 598
Hpy166II GTNNAC 2 cut(s) 431, 465
Hpy188III TCNNGA 3 cut(s) 227, 525, 712
Hpy8I GTNNAC 2 cut(s) 431, 465
Hpy99I CGWCG 2 cut(s) 132, 135
HpyAV CCTTC 1 cut(s) 446
HpyCH4III ACNGT 5 cut(s) 128, 214, 435, 610, 643
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 5 cut(s) 173, 197, 290, 580, 656
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 60, 149, 179, 593
HpyF3I CTNAG 1 cut(s) 112
HpySE526I ACGT 1 cut(s) 521
Hsp92I GRCGYC 1 cut(s) 521
Hsp92II CATG 4 cut(s) 98, 267, 275, 516
KroI GCCGGC 1 cut(s) 587
KroNI GCCGGC 1 cut(s) 589
Kzo9I GATC 1 cut(s) 682
LmnI GCTCC 2 cut(s) 487, 548
Lsp1109I GCAGC 3 cut(s) 17, 457, 460
MaeI CTAG 1 cut(s) 721
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 3 cut(s) 166, 435, 604
MalI GATC 1 cut(s) 684
MboI GATC 1 cut(s) 682
MboII GAAGA 6 cut(s) 36, 188, 308, 631, 667, 706
MhlI GDGCHC 1 cut(s) 253
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 6 cut(s) 55, 77, 160, 239, 389, 705
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 2 cut(s) 79, 322
MmeI TCCRAC 1 cut(s) 465
MnlI CCTC 5 cut(s) 95, 288, 318, 432, 453
Mox20I TGGCCA 1 cut(s) 143
MroNI GCCGGC 1 cut(s) 587
MscI TGGCCA 1 cut(s) 143
MseI TTAA 1 cut(s) 405
Msp20I TGGCCA 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 3 cut(s) 309, 495, 588
MspR9I CCNGG 4 cut(s) 309, 449, 496, 546
MvaI CCWGG 2 cut(s) 449, 546
MwoI GCNNNNNNNGC 5 cut(s) 11, 60, 149, 179, 593
NaeI GCCGGC 1 cut(s) 589
NciI CCSGG 2 cut(s) 309, 496
NdeII GATC 1 cut(s) 682
NgoMIV GCCGGC 1 cut(s) 587
NlaIII CATG 4 cut(s) 98, 267, 275, 516
NlaIV GGNNCC 2 cut(s) 106, 568
NmeAIII GCCGAG 1 cut(s) 715
NmuCI GTSAC 2 cut(s) 166, 604
NspI RCATGY 1 cut(s) 516
NspV TTCGAA 1 cut(s) 501
PdiI GCCGGC 1 cut(s) 589
PfeI GAWTC 1 cut(s) 557
PkrI GCNGC 3 cut(s) 7, 472, 475
PleI GAGTC 2 cut(s) 79, 322
PpsI GAGTC 2 cut(s) 79, 322
Psp124BI GAGCTC 1 cut(s) 253
Psp6I CCWGG 2 cut(s) 447, 544
PspGI CCWGG 2 cut(s) 447, 544
PspN4I GGNNCC 2 cut(s) 106, 568
PstI CTGCAG 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 3 cut(s) 396, 633, 645
RsaNI GTAC 3 cut(s) 395, 632, 644
SacI GAGCTC 1 cut(s) 253
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 3 cut(s) 6, 471, 474
Sau3AI GATC 1 cut(s) 682
ScaI AGTACT 1 cut(s) 645
SchI GAGTC 2 cut(s) 79, 322
ScrFI CCNGG 4 cut(s) 309, 449, 496, 546
SduI GDGCHC 1 cut(s) 253
SetI ASST 7 cut(s) 253, 424, 464, 524, 598, 631, 722
SfcI CTRYAG 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 501
Sse9I AATT 6 cut(s) 55, 77, 160, 239, 389, 705
SsiI CCGC 1 cut(s) 61
SspMI CTAG 1 cut(s) 721
SstI GAGCTC 1 cut(s) 253
StyD4I CCNGG 4 cut(s) 307, 447, 494, 544
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 5 cut(s) 128, 214, 435, 610, 643
TaiI ACGT 1 cut(s) 524
TaqI TCGA 2 cut(s) 133, 501
TasI AATT 6 cut(s) 55, 77, 160, 239, 389, 705
TatI WGTACW 3 cut(s) 394, 631, 643
TfiI GAWTC 1 cut(s) 557
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TseFI GTSAC 2 cut(s) 166, 604
TseI GCWGC 3 cut(s) 5, 470, 473
Tsp45I GTSAC 2 cut(s) 166, 604
TspDTI ATGAA 2 cut(s) 274, 655
TspGWI ACGGA 2 cut(s) 526, 587
XapI RAATTY 4 cut(s) 77, 160, 389, 705
XceI RCATGY 1 cut(s) 516
XmiI GTMKAC 1 cut(s) 464
XspI CTAG 1 cut(s) 721
ZraI GACGTC 1 cut(s) 522
ZrmI AGTACT 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.