Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006896

Physical Location & Seq

Genomic Coordinates Forward (+)

9906132 .. 9908453

Gene Structure 2322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1080900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGAATGCAATAATCGACAGGGGTGTTCTCGATTGCTGCCAGCATTGGTTCTGTTTCTCATGCATTGACAATTGGGCTACCATTACAAACCTCTGCCCGCTTTGCCAGAATGAATTTCAAATGATCACATGTGTTCCGGTATACGATACTATTGGGAGCCGCAAAGCGGACGAGGACTCAACTTATAGGAATGGGCCGGTCACAGCCCATTTATTAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EloA-BP1 PHD zf-C3HC4_2 zf-RING_2

Protein Analysis

74

Amino Acids

8.23

Weight (kDa)

4.64

Isoelectric Point (pI)

15.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	9 - 36	4.3e-07	Ring finger domain
zf-C3HC4	PF00097	9 - 35	7.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10930 AT4G10930
fragaria_vesca	FvH4_5g04850 FvH4_5g04850 FvH4_5g04850
malus_domestica	MD06G1109300.v1.1 MD12G1080900.v1.1 MD14G1130300.v1.1
prunus_persica	Prupe.5G122300_v2.0.a1 Prupe.5G122300_v2.0.a1 Prupe.5G122300_v2.0.a1
pyrus_communis	pycom06g10260 pycom06g10270 pycom06g10280
rosa_chinensis	RchiOBHm_Chr7g0194241
rosa_laevigata	RLG00000004207
rosa_multiflora	Rmu_co8489007.1_g000001 Rmu_sc0000901.1_g000004 Rmu_sc0009433.1_g000017
rosa_roxburghii	Rroxscaffold_3G00261470
rosa_rugosa	Rorug07G0014700
rosa_samantha	Rh7AG142000 Rh7BG142400 Rh7CG146100 Rh7DG143400
rosa_wichuraiana	Rw7G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	3 cut(s)	98, 160, 167
AcsI	RAATTY	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	119
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	23
BclI	TGATCA	1 cut(s)	123
BisI	GCNGC	2 cut(s)	37, 160
BlsI	GCNGC	2 cut(s)	38, 161
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	196
BsiSI	CCGG	2 cut(s)	137, 197
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	3 cut(s)	98, 160, 167
BspANI	GGCC	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	196
BssMI	GATC	1 cut(s)	123
BssNAI	GTATAC	1 cut(s)	142
Bst1107I	GTATAC	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	41, 98
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	23
BstZ17I	GTATAC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	41, 98
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	194
CviAII	CATG	2 cut(s)	60, 129
CviJI	RGCY	4 cut(s)	77, 159, 196, 206
CviKI_1	RGCY	4 cut(s)	77, 159, 196, 206
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	65
FaeI	CATG	2 cut(s)	63, 132
FaiI	YATR	4 cut(s)	61, 130, 142, 186
FatI	CATG	2 cut(s)	59, 128
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	37, 160
Fsp4HI	GCNGC	2 cut(s)	37, 160
GluI	GCNGC	2 cut(s)	37, 160
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	2 cut(s)	137, 197
Hin1II	CATG	2 cut(s)	63, 132
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	2 cut(s)	137, 197
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4V	TGCA	2 cut(s)	8, 63
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	63, 132
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	5 cut(s)	4, 53, 119, 150, 210
Lsp1109I	GCAGC	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MfeI	CAATTG	1 cut(s)	70
MluCI	AATT	2 cut(s)	70, 113
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	2 cut(s)	101, 166
Mph1103I	ATGCAT	1 cut(s)	65
MspI	CCGG	2 cut(s)	137, 197
MunI	CAATTG	1 cut(s)	70
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	102
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	2 cut(s)	63, 132
NlaIV	GGNNCC	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	65
NspI	RCATGY	1 cut(s)	132
PciI	ACATGT	1 cut(s)	128
PctI	GAATGC	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	38, 161
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PscI	ACATGT	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	194
SatI	GCNGC	2 cut(s)	37, 160
Sau3AI	GATC	1 cut(s)	123
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	170
SetI	ASST	1 cut(s)	93
Sse9I	AATT	2 cut(s)	70, 113
SsiI	CCGC	3 cut(s)	98, 160, 167
TaqI	TCGA	2 cut(s)	15, 30
TasI	AATT	2 cut(s)	70, 113
TauI	GCSGC	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	36
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	17, 126
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	141
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.