pycom06g10280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0006896
Physical Location & Seq
Forward (+)
15632108 .. 15632434
327 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10280.1

Sequence Viewer

Length: 327 bp
ATGAATCTATGTTCCCAGGAGATATTGCGTCGTTCAGAAAATAGGAAGTCTAGTGCAGGTGCAGCCCCAGTAAATAGTTCATCCCCATCTTCAGTCCCTGCTGATAGAGCAGAACAAGCTGCCGATGAAATTTCAACTGATCCTGTAATTGAAGCAGCACTGAGAAATGCTGGTCTTCTGTCCGATTCTCCTCCAAATAGTCCACATCCCAATGTGGAAGTTCCTGCTGAAGAAGATGGCCCCTCGTTAGATATCAGAGAGGAAGGGTCTGATAATGTATTTGAAATGGATTTTCAGCCGGATCTGGACATATATGGTGACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EloA-BP1 PHD zf-C3HC4_2 zf-RING_2

Protein Analysis

109

Amino Acids

11.56

Weight (kDa)

4.05

Isoelectric Point (pI)

82.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 47
AclWI GGATC 2 cut(s) 134, 309
AcsI RAATTY 1 cut(s) 129
AcuI CTGAAG 2 cut(s) 75, 249
AgsI TTSAA 3 cut(s) 135, 152, 284
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
AlwI GGATC 2 cut(s) 134, 309
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 3 cut(s) 62, 119, 155
ApoI RAATTY 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 167
BbvI GCAGC 3 cut(s) 74, 106, 167
BccI CCATC 2 cut(s) 94, 230
BciT130I CCWGG 1 cut(s) 17
BfaI CTAG 1 cut(s) 51
BfuAI ACCTGC 1 cut(s) 47
BisI GCNGC 3 cut(s) 63, 120, 156
BlsI GCNGC 3 cut(s) 64, 121, 157
Bme1390I CCNGG 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 2 cut(s) 80, 205
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 3 cut(s) 74, 106, 167
BsgI GTGCAG 2 cut(s) 75, 81
BshFI GGCC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 139, 301
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 2 cut(s) 134, 309
BsrI ACTGG 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 2 cut(s) 139, 301
Bst2UI CCWGG 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 80, 205
BstKTI GATC 2 cut(s) 142, 304
BstMBI GATC 2 cut(s) 139, 301
BstMWI GCNNNNNNNGC 3 cut(s) 62, 107, 116
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 74, 106, 167
BstV2I GAAGAC 1 cut(s) 167
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 2 cut(s) 80, 205
BtsIMutI CAGTG 1 cut(s) 158
BveI ACCTGC 1 cut(s) 47
CaiI CAGNNNCTG 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 239
CseI GACGC 1 cut(s) 17
CviJI RGCY 4 cut(s) 65, 119, 240, 298
CviKI_1 RGCY 4 cut(s) 65, 119, 240, 298
DdeI CTNAG 1 cut(s) 161
DpnI GATC 2 cut(s) 141, 303
DpnII GATC 2 cut(s) 139, 301
Eco32I GATATC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 75, 249
EcoRII CCWGG 1 cut(s) 15
EcoRV GATATC 1 cut(s) 253
FaiI YATR 4 cut(s) 10, 311, 313, 315
FaqI GGGAC 1 cut(s) 80
Fnu4HI GCNGC 3 cut(s) 63, 120, 156
FokI GGATG 2 cut(s) 67, 192
Fsp4HI GCNGC 3 cut(s) 63, 120, 156
FspBI CTAG 1 cut(s) 51
GluI GCNGC 3 cut(s) 63, 120, 156
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 17
HinfI GANTC 2 cut(s) 4, 185
HpaII CCGG 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 4 cut(s) 37, 184, 257, 271
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 203
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 257
HpyCH4V TGCA 2 cut(s) 56, 62
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 107, 116
HpyF3I CTNAG 1 cut(s) 161
Kzo9I GATC 2 cut(s) 139, 301
Lsp1109I GCAGC 3 cut(s) 74, 106, 167
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 317
MalI GATC 2 cut(s) 141, 303
MboI GATC 2 cut(s) 139, 301
MboII GAAGA 4 cut(s) 81, 167, 242, 245
MflI RGATCY 1 cut(s) 301
MluCI AATT 2 cut(s) 129, 147
MnlI CCTC 3 cut(s) 201, 253, 253
MslI CAYNNNNRTG 1 cut(s) 210
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 62, 107, 116
NdeII GATC 2 cut(s) 139, 301
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 317
PaqCI CACCTGC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 4, 185
PkrI GCNGC 3 cut(s) 64, 121, 157
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 210
SatI GCNGC 3 cut(s) 63, 120, 156
Sau3AI GATC 2 cut(s) 139, 301
Sau96I GGNCC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 17
SetI ASST 2 cut(s) 61, 121
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 2 cut(s) 129, 147
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 15
TasI AATT 2 cut(s) 129, 147
TfiI GAWTC 2 cut(s) 4, 185
TscAI CASTG 1 cut(s) 165
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 3 cut(s) 62, 119, 155
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 3 cut(s) 17, 69, 141
TspRI CASTG 1 cut(s) 165
XapI RAATTY 1 cut(s) 129
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.