Rorug07G0014700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006896
Physical Location & Seq
Reverse (-)
1172324 .. 1177313
4990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0014700.1

Sequence Viewer

Length: 1164 bp
ATGTGGATGATGGGTTACAACGATGGTGGTGACTTCAACATGATTCCGGATTCAGCCTTCAACGGTCGGAAGCTTCGGCCTCTCGTTCCTAGGCCTCTGTCATCTCCTCATAACAACAACAACAACAACAACACTTCAACAAGTACACATGCTCCACCTTGTTTCAGTCGAATTCATGCTGCGTCTGATTTCTTAGCACAATATCATCAGCTGGGTGAACAAAGAGGGATGAGAGAGTTCAATACGGTGCCGCAGGTTGTGGTGAGCTCGAGATGGAACCCCACGCCGGAACAGTTGAGGGCACTAGAGGAGTTATATCGACGAGGGACTCGAACCCCATCGGCTGAGCAGATTCAGCAAATCACTGCTCAGCTTAGAAGGTATGGAAAGATAGAGGGCAAGAACGTGTTCTATTGGTTCCAAAACCACAAGGCAAGAGAGAGACAGAAACGCCGTCGCCAGATGGAATCTCACGACGACCTTCAACTCATGTGTTCAGATCACCAAAAGAAGGAATCATTAGGCGGGGCAAGTAGGACAGTGTATGAAGTTGAAGAGACCAAGAATTGGGCACCCTCTGCAAACTGCATGACTACTAGTCTCCAAGATCAGCTTCATCATCAACAGGAAACAGTAAAAGCAGGAGCAGAGAGCAGGACGGAAGGATGGGTCCAATTCGGTGAGGAAGAATTGCAGCAACTTCAACAAGAGCAAAGAAGGAATTCCATGACTGTAGAAAAGAATGCCAGGTGGCAGATGATGCAGTTGTCTTGTCCTCCTCCTCCTCCTCTTCATGACCTCACCCACCTCATAAACGCCCCCACTTGTACCAGAACGACAGTAAGAACAATGGAGATGGACCAAAAGCAGCTCATTAATAACCGTAATAATAAGACTAGTCCTCCTCATGATCTCAGCATCTTTATAGCTCCCTACAGGTCTGGCTCTGCCCTTAACGGTCGCCATCTCCAACAAAACCAACACCGTAACGAAGAAGAAGATATTTCACGTGGAGATCAGTCTCAAACCCTCCAGCTATTTCCGCTCCGGAGTAGTACTTGCGGAGAAAAAGATCATCTTACAACTGAGAAATCCTTGCTAAACCCTAGTTTCGGCACTGGCCCTAATTACCAGTTTTTTGAGTTCCTCCCATTGAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EloA-BP1 PHD zf-C3HC4_2 zf-RING_2

Protein Analysis

387

Amino Acids

44.71

Weight (kDa)

8.69

Isoelectric Point (pI)

65.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 90 - 149 1.8e-15 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 244
AccB1I GGYRCC 2 cut(s) 247, 571
AccB7I CCANNNNNTGG 1 cut(s) 567
AccBSI CCGCTC 1 cut(s) 1045
AccIII TCCGGA 2 cut(s) 46, 1047
AciI CCGC 4 cut(s) 251, 525, 1043, 1062
AcsI RAATTY 2 cut(s) 171, 721
AcvI CACGTG 1 cut(s) 1010
AfaI GTAC 3 cut(s) 145, 829, 1057
AfiI CCNNNNNNNGG 4 cut(s) 286, 511, 567, 1112
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 8 cut(s) 37, 61, 138, 241, 485, 554, 704, 1156
AhdI GACNNNNNGTC 1 cut(s) 597
AhlI ACTAGT 2 cut(s) 596, 896
AjnI CCWGG 1 cut(s) 746
AjuI GAANNNNNNNTTGG 2 cut(s) 597, 629
AluBI AGCT 8 cut(s) 73, 211, 267, 373, 613, 871, 929, 1036
AluI AGCT 8 cut(s) 73, 211, 267, 373, 613, 871, 929, 1036
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 4 cut(s) 436, 551, 605, 1026
Ama87I CYCGRG 1 cut(s) 268
Aor13HI TCCGGA 2 cut(s) 46, 1047
AoxI GGCC 3 cut(s) 77, 92, 1120
ApeKI GCWGC 3 cut(s) 179, 694, 868
ApoI RAATTY 2 cut(s) 171, 721
AseI ATTAAT 1 cut(s) 876
Asp700I GAANNNNTTC 2 cut(s) 407, 721
AspA2I CCTAGG 1 cut(s) 89
AspS9I GGNCC 3 cut(s) 670, 859, 1121
AsuHPI GGTGA 6 cut(s) 41, 227, 274, 494, 692, 793
AvaI CYCGRG 1 cut(s) 268
AvaII GGWCC 2 cut(s) 670, 859
AvrII CCTAGG 1 cut(s) 89
BaeGI GKGCMC 2 cut(s) 304, 574
BanI GGYRCC 2 cut(s) 247, 571
BanII GRGCYC 1 cut(s) 269
BbrPI CACGTG 1 cut(s) 1010
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 3 cut(s) 166, 706, 880
BccI CCATC 8 cut(s) 4, 17, 267, 346, 457, 660, 850, 972
BceAI ACGGC 1 cut(s) 438
BciT130I CCWGG 1 cut(s) 748
BcoDI GTCTC 4 cut(s) 436, 551, 605, 1026
BcuI ACTAGT 2 cut(s) 596, 896
BfaI CTAG 5 cut(s) 90, 305, 597, 897, 1107
BfmI CTRYAG 2 cut(s) 732, 934
BfuAI ACCTGC 1 cut(s) 244
BisI GCNGC 4 cut(s) 180, 251, 695, 869
BlnI CCTAGG 1 cut(s) 89
BlpI GCTNAGC 2 cut(s) 345, 369
BlsI GCNGC 4 cut(s) 181, 252, 696, 870
BmcAI AGTACT 1 cut(s) 1057
Bme1390I CCNGG 1 cut(s) 748
Bme18I GGWCC 2 cut(s) 670, 859
BmeRI GACNNNNNGTC 1 cut(s) 597
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 3 cut(s) 670, 859, 1121
BmiI GGNNCC 5 cut(s) 249, 278, 419, 573, 671
BmrFI CCNGG 1 cut(s) 748
BmsI GCATC 2 cut(s) 750, 927
BpmI CTGGAG 1 cut(s) 1016
Bpu1102I GCTNAGC 2 cut(s) 345, 369
BsaAI YACGTR 1 cut(s) 1010
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 1 cut(s) 89
BsaWI WCCGGW 2 cut(s) 46, 1047
BsaXI ACNNNNNCTCC 4 cut(s) 136, 166, 886, 916
Bsc4I CCNNNNNNNGG 4 cut(s) 286, 511, 567, 1112
Bse1I ACTGG 2 cut(s) 1123, 1132
BseAI TCCGGA 2 cut(s) 46, 1047
BseBI CCWGG 1 cut(s) 748
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 3 cut(s) 12, 234, 671
BseLI CCNNNNNNNGG 4 cut(s) 286, 511, 567, 1112
BseMII CTCAG 4 cut(s) 336, 383, 928, 1077
BseNI ACTGG 2 cut(s) 1123, 1132
BseRI GAGGAG 7 cut(s) 96, 323, 768, 771, 774, 777, 894
BseSI GKGCMC 2 cut(s) 304, 574
BseXI GCAGC 3 cut(s) 166, 706, 880
BseYI CCCAGC 1 cut(s) 211
Bsh1285I CGRYCG 2 cut(s) 67, 961
BshFI GGCC 3 cut(s) 79, 94, 1122
BshNI GGYRCC 2 cut(s) 247, 571
BsiEI CGRYCG 2 cut(s) 67, 961
BsiHKAI GWGCWC 1 cut(s) 269
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 3 cut(s) 47, 287, 1048
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 4 cut(s) 286, 511, 567, 1112
BsmAI GTCTC 4 cut(s) 436, 551, 605, 1026
BsmFI GGGAC 1 cut(s) 340
BsmI GAATGC 1 cut(s) 748
BsnI GGCC 3 cut(s) 79, 94, 1122
Bso31I GGTCTC 1 cut(s) 551
BsoBI CYCGRG 1 cut(s) 268
Bsp1286I GDGCHC 3 cut(s) 269, 304, 574
Bsp13I TCCGGA 2 cut(s) 46, 1047
Bsp143I GATC 5 cut(s) 499, 607, 910, 1015, 1072
Bsp1720I GCTNAGC 2 cut(s) 345, 369
BspACI CCGC 4 cut(s) 251, 525, 1043, 1062
BspANI GGCC 3 cut(s) 79, 94, 1122
BspCNI CTCAG 4 cut(s) 337, 382, 927, 1078
BspEI TCCGGA 2 cut(s) 46, 1047
BspHI TCATGA 2 cut(s) 793, 907
BspLI GGNNCC 5 cut(s) 249, 278, 419, 573, 671
BspMI ACCTGC 1 cut(s) 244
BspT107I GGYRCC 2 cut(s) 247, 571
BspTNI GGTCTC 1 cut(s) 551
BsrBI CCGCTC 1 cut(s) 1045
BsrI ACTGG 2 cut(s) 1123, 1132
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 5 cut(s) 499, 607, 910, 1015, 1072
BssT1I CCWWGG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 748
Bst6I CTCTTC 2 cut(s) 549, 795
BstAPI GCANNNNNTGC 2 cut(s) 578, 760
BstBAI YACGTR 1 cut(s) 1010
BstDEI CTNAG 6 cut(s) 193, 345, 369, 374, 914, 1086
BstF5I GGATG 3 cut(s) 12, 234, 671
BstKTI GATC 5 cut(s) 502, 610, 913, 1018, 1075
BstMAI GTCTC 4 cut(s) 436, 551, 605, 1026
BstMBI GATC 5 cut(s) 499, 607, 910, 1015, 1072
BstMCI CGRYCG 2 cut(s) 67, 961
BstMWI GCNNNNNNNGC 4 cut(s) 355, 578, 760, 1042
BstNI CCWGG 1 cut(s) 748
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 746
BstSFI CTRYAG 2 cut(s) 732, 934
BstSLI GKGCMC 2 cut(s) 304, 574
BstV1I GCAGC 3 cut(s) 166, 706, 880
BsuRI GGCC 3 cut(s) 79, 94, 1122
BtsCI GGATG 3 cut(s) 12, 234, 671
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 3 cut(s) 363, 546, 1116
BveI ACCTGC 1 cut(s) 244
CciI TCATGA 2 cut(s) 793, 907
Cfr13I GGNCC 3 cut(s) 670, 859, 1121
CseI GACGC 1 cut(s) 171
Csp6I GTAC 3 cut(s) 144, 828, 1056
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 8 cut(s) 40, 149, 176, 490, 589, 727, 794, 908
CviQI GTAC 3 cut(s) 144, 828, 1056
DdeI CTNAG 6 cut(s) 193, 345, 369, 374, 914, 1086
DpnI GATC 5 cut(s) 501, 609, 912, 1017, 1074
DpnII GATC 5 cut(s) 499, 607, 910, 1015, 1072
DriI GACNNNNNGTC 1 cut(s) 597
Eam1104I CTCTTC 2 cut(s) 549, 795
Eam1105I GACNNNNNGTC 1 cut(s) 597
EarI CTCTTC 2 cut(s) 549, 795
Ecl136II GAGCTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 551
Eco47I GGWCC 2 cut(s) 670, 859
Eco53kI GAGCTC 1 cut(s) 267
Eco72I CACGTG 1 cut(s) 1010
Eco88I CYCGRG 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 267
EcoRI GAATTC 2 cut(s) 171, 721
EcoRII CCWGG 1 cut(s) 746
EcoT14I CCWWGG 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 8 cut(s) 43, 152, 179, 493, 592, 730, 797, 911
FalI AAGNNNNNCTT 4 cut(s) 597, 629, 1062, 1094
FaqI GGGAC 1 cut(s) 340
FatI CATG 8 cut(s) 39, 148, 175, 489, 588, 726, 793, 907
FauI CCCGC 1 cut(s) 518
Fnu4HI GCNGC 4 cut(s) 180, 251, 695, 869
FokI GGATG 3 cut(s) 19, 241, 678
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 4 cut(s) 180, 251, 695, 869
FspBI CTAG 5 cut(s) 90, 305, 597, 897, 1107
GluI GCNGC 4 cut(s) 180, 251, 695, 869
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 1016
HaeIII GGCC 3 cut(s) 79, 94, 1122
HapII CCGG 3 cut(s) 47, 287, 1048
HgaI GACGC 1 cut(s) 171
Hin1II CATG 8 cut(s) 43, 152, 179, 493, 592, 730, 797, 911
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 6 cut(s) 43, 50, 328, 352, 467, 515
HpaII CCGG 3 cut(s) 47, 287, 1048
HphI GGTGA 6 cut(s) 41, 227, 274, 494, 692, 793
Hpy166II GTNNAC 2 cut(s) 146, 218
Hpy188I TCNGA 3 cut(s) 69, 187, 499
Hpy188III TCNNGA 6 cut(s) 47, 270, 473, 794, 908, 1048
Hpy8I GTNNAC 2 cut(s) 146, 218
Hpy99I CGWCG 3 cut(s) 324, 459, 479
HpyAV CCTTC 6 cut(s) 67, 372, 491, 505, 656, 711
HpyCH4IV ACGT 2 cut(s) 405, 1009
HpyCH4V TGCA 4 cut(s) 581, 588, 694, 763
HpyF10VI GCNNNNNNNGC 4 cut(s) 355, 578, 760, 1042
HpyF3I CTNAG 6 cut(s) 193, 345, 369, 374, 914, 1086
HpySE526I ACGT 2 cut(s) 405, 1009
Hsp92II CATG 8 cut(s) 43, 152, 179, 493, 592, 730, 797, 911
Kpn2I TCCGGA 2 cut(s) 46, 1047
Kzo9I GATC 5 cut(s) 499, 607, 910, 1015, 1072
LmnI GCTCC 4 cut(s) 157, 644, 934, 1050
Lsp1109I GCAGC 3 cut(s) 166, 706, 880
LweI GCATC 2 cut(s) 750, 927
MaeI CTAG 5 cut(s) 90, 305, 597, 897, 1107
MaeII ACGT 2 cut(s) 405, 1009
MaeIII GTNAC 3 cut(s) 14, 29, 986
MalI GATC 5 cut(s) 501, 609, 912, 1017, 1074
MbiI CCGCTC 1 cut(s) 1045
MboI GATC 5 cut(s) 499, 607, 910, 1015, 1072
MboII GAAGA 6 cut(s) 566, 698, 782, 1004, 1007, 1010
MhlI GDGCHC 3 cut(s) 269, 304, 574
MluCI AATT 6 cut(s) 171, 565, 674, 689, 721, 1126
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 2 cut(s) 47, 994
MroI TCCGGA 2 cut(s) 46, 1047
MroXI GAANNNNTTC 2 cut(s) 407, 721
MseI TTAA 2 cut(s) 876, 954
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 3 cut(s) 47, 287, 1048
MspR9I CCNGG 1 cut(s) 748
Mva1269I GAATGC 1 cut(s) 748
MvaI CCWGG 1 cut(s) 748
MwoI GCNNNNNNNGC 4 cut(s) 355, 578, 760, 1042
NdeII GATC 5 cut(s) 499, 607, 910, 1015, 1072
NlaIII CATG 8 cut(s) 43, 152, 179, 493, 592, 730, 797, 911
NlaIV GGNNCC 5 cut(s) 249, 278, 419, 573, 671
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 1 cut(s) 152
PaeR7I CTCGAG 1 cut(s) 268
PagI TCATGA 2 cut(s) 793, 907
PceI AGGCCT 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PctI GAATGC 1 cut(s) 748
PdmI GAANNNNTTC 2 cut(s) 407, 721
PfeI GAWTC 5 cut(s) 43, 50, 352, 467, 515
PflMI CCANNNNNTGG 1 cut(s) 567
PkrI GCNGC 4 cut(s) 181, 252, 696, 870
PleI GAGTC 1 cut(s) 322
PmaCI CACGTG 1 cut(s) 1010
PmlI CACGTG 1 cut(s) 1010
PpsI GAGTC 1 cut(s) 322
Ppu21I YACGTR 1 cut(s) 1010
PshBI ATTAAT 1 cut(s) 876
Psp124BI GAGCTC 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 746
PspCI CACGTG 1 cut(s) 1010
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 1 cut(s) 746
PspN4I GGNNCC 5 cut(s) 249, 278, 419, 573, 671
PspPI GGNCC 3 cut(s) 670, 859, 1121
PvuII CAGCTG 1 cut(s) 211
RsaI GTAC 3 cut(s) 145, 829, 1057
RsaNI GTAC 3 cut(s) 144, 828, 1056
SacI GAGCTC 1 cut(s) 269
SaqAI TTAA 2 cut(s) 876, 954
SatI GCNGC 4 cut(s) 180, 251, 695, 869
Sau3AI GATC 5 cut(s) 499, 607, 910, 1015, 1072
Sau96I GGNCC 3 cut(s) 670, 859, 1121
ScaI AGTACT 1 cut(s) 1057
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 1 cut(s) 748
SduI GDGCHC 3 cut(s) 269, 304, 574
SfaNI GCATC 2 cut(s) 750, 927
SfcI CTRYAG 2 cut(s) 732, 934
Sfr274I CTCGAG 1 cut(s) 268
SinI GGWCC 2 cut(s) 670, 859
SlaI CTCGAG 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
SpeI ACTAGT 2 cut(s) 596, 896
Sse9I AATT 6 cut(s) 171, 565, 674, 689, 721, 1126
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 4 cut(s) 251, 525, 1043, 1062
SspMI CTAG 5 cut(s) 90, 305, 597, 897, 1107
SstI GAGCTC 1 cut(s) 269
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 746
StyI CCWWGG 1 cut(s) 89
TaiI ACGT 2 cut(s) 408, 1012
TaqI TCGA 4 cut(s) 169, 269, 319, 331
TasI AATT 6 cut(s) 171, 565, 674, 689, 721, 1126
TatI WGTACW 2 cut(s) 143, 1055
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 5 cut(s) 43, 50, 352, 467, 515
Tru1I TTAA 2 cut(s) 876, 954
Tru9I TTAA 2 cut(s) 876, 954
TscAI CASTG 3 cut(s) 370, 546, 1123
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 3 cut(s) 179, 694, 868
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 4 cut(s) 164, 561, 605, 782
TspGWI ACGGA 1 cut(s) 674
TspRI CASTG 3 cut(s) 370, 546, 1123
Van91I CCANNNNNTGG 1 cut(s) 567
VpaK11BI GGWCC 2 cut(s) 670, 859
VspI ATTAAT 1 cut(s) 876
XapI RAATTY 2 cut(s) 171, 721
XceI RCATGY 1 cut(s) 152
XhoI CTCGAG 1 cut(s) 268
XmaJI CCTAGG 1 cut(s) 89
XmnI GAANNNNTTC 2 cut(s) 407, 721
XspI CTAG 5 cut(s) 90, 305, 597, 897, 1107
ZrmI AGTACT 1 cut(s) 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.