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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G10930 AT4G10930 |
| fragaria_vesca | FvH4_5g04850 FvH4_5g04850 FvH4_5g04850 |
| malus_domestica | MD06G1109300.v1.1 MD12G1080900.v1.1 MD14G1130300.v1.1 |
| prunus_persica | Prupe.5G122300_v2.0.a1 Prupe.5G122300_v2.0.a1 Prupe.5G122300_v2.0.a1 |
| pyrus_communis | pycom06g10260 pycom06g10270 pycom06g10280 |
| rosa_chinensis | RchiOBHm_Chr7g0194241 |
| rosa_laevigata | RLG00000004207 |
| rosa_multiflora | Rmu_co8489007.1_g000001 Rmu_sc0000901.1_g000004 Rmu_sc0009433.1_g000017 |
| rosa_roxburghii | Rroxscaffold_3G00261470 |
| rosa_rugosa | Rorug07G0014700 |
| rosa_samantha | Rh7AG142000 Rh7BG142400 Rh7CG146100 Rh7DG143400 |
| rosa_wichuraiana | Rw7G012140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3925 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1945, 3304 |
| Acc36I | ACCTGC | 1 cut(s) | 3443 |
| Acc65I | GGTACC | 1 cut(s) | 486 |
| AccB1I | GGYRCC | 2 cut(s) | 486, 3089 |
| AccBSI | CCGCTC | 1 cut(s) | 3747 |
| AccII | CGCG | 1 cut(s) | 1818 |
| AciI | CCGC | 5 cut(s) | 215, 1657, 2142, 2711, 3747 |
| AclI | AACGTT | 1 cut(s) | 750 |
| AclWI | GGATC | 9 cut(s) | 287, 427, 506, 1691, 1744, 2255, 2867, 2966, 3448 |
| AcsI | RAATTY | 9 cut(s) | 10, 27, 230, 373, 1822, 1895, 3277, 3410, 3429 |
| AcuI | CTGAAG | 9 cut(s) | 810, 819, 877, 1137, 1157, 1799, 2808, 2904, 2982 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 814, 3128, 3904 |
| AflII | CTTAAG | 2 cut(s) | 929, 1292 |
| AflIII | ACRYGT | 2 cut(s) | 104, 245 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1039 |
| AjnI | CCWGG | 3 cut(s) | 2033, 2754, 3284 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 30, 62, 1781, 1813, 3069, 3101, 3315, 3347 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2787, 2819 |
| Alw21I | GWGCWC | 2 cut(s) | 2499, 2619 |
| Alw26I | GTCTC | 7 cut(s) | 349, 715, 1621, 1931, 3112, 3290, 3884 |
| AlwI | GGATC | 9 cut(s) | 287, 427, 506, 1691, 1744, 2255, 2867, 2966, 3448 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 797, 1385 |
| AoxI | GGCC | 6 cut(s) | 192, 976, 1516, 1957, 2999, 3131 |
| ApeKI | GCWGC | 8 cut(s) | 153, 925, 1141, 1724, 2105, 2285, 2596, 3098 |
| ApoI | RAATTY | 9 cut(s) | 10, 27, 230, 373, 1822, 1895, 3277, 3410, 3429 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1481, 1513, 1985, 2017, 3656, 3688 |
| AseI | ATTAAT | 1 cut(s) | 2691 |
| Asp718I | GGTACC | 1 cut(s) | 486 |
| AspLEI | GCGC | 2 cut(s) | 1259, 3833 |
| AsuC2I | CCSGG | 2 cut(s) | 1880, 2437 |
| AsuII | TTCGAA | 2 cut(s) | 412, 1480 |
| AsuNHI | GCTAGC | 1 cut(s) | 2518 |
| AvaII | GGWCC | 6 cut(s) | 1357, 1876, 2325, 2718, 3383, 3497 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2043, 2076 |
| BanI | GGYRCC | 2 cut(s) | 486, 3089 |
| BanII | GRGCYC | 1 cut(s) | 2422 |
| BauI | CACGAG | 1 cut(s) | 809 |
| BbsI | GAAGAC | 4 cut(s) | 1491, 1864, 2900, 3084 |
| Bbv12I | GWGCWC | 2 cut(s) | 2499, 2619 |
| BbvCI | CCTCAGC | 2 cut(s) | 1596, 2624 |
| BbvI | GCAGC | 8 cut(s) | 140, 937, 1153, 1736, 2092, 2272, 2608, 3085 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3090, 3124 |
| BciT130I | CCWGG | 3 cut(s) | 2035, 2756, 3286 |
| BciVI | GTATCC | 1 cut(s) | 643 |
| BclI | TGATCA | 2 cut(s) | 240, 3402 |
| BcnI | CCSGG | 2 cut(s) | 1880, 2437 |
| BcoDI | GTCTC | 7 cut(s) | 349, 715, 1621, 1931, 3112, 3290, 3884 |
| BfaI | CTAG | 9 cut(s) | 1197, 1260, 1560, 1730, 2093, 2519, 2732, 2790, 3567 |
| BfmI | CTRYAG | 1 cut(s) | 1407 |
| BfoI | RGCGCY | 1 cut(s) | 1260 |
| BfrI | CTTAAG | 2 cut(s) | 929, 1292 |
| BfuAI | ACCTGC | 1 cut(s) | 3443 |
| BfuI | GTATCC | 1 cut(s) | 643 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1721 |
| BglII | AGATCT | 3 cut(s) | 1132, 3034, 3193 |
| BisI | GCNGC | 8 cut(s) | 154, 926, 1142, 1725, 2106, 2286, 2597, 3099 |
| BlsI | GCNGC | 8 cut(s) | 155, 927, 1143, 1726, 2107, 2287, 2598, 3100 |
| BmcAI | AGTACT | 2 cut(s) | 940, 3205 |
| Bme1390I | CCNGG | 5 cut(s) | 1880, 2035, 2437, 2756, 3286 |
| Bme18I | GGWCC | 6 cut(s) | 1357, 1876, 2325, 2718, 3383, 3497 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1039 |
| BmiI | GGNNCC | 7 cut(s) | 488, 1396, 1877, 2229, 2326, 2797, 3091 |
| BmrFI | CCNGG | 5 cut(s) | 1880, 2035, 2437, 2756, 3286 |
| BmrI | ACTGGG | 2 cut(s) | 2553, 2795 |
| BmtI | GCTAGC | 1 cut(s) | 2522 |
| BmuI | ACTGGG | 2 cut(s) | 2553, 2795 |
| BpiI | GAAGAC | 4 cut(s) | 1491, 1864, 2900, 3084 |
| BpmI | CTGGAG | 2 cut(s) | 1381, 2444 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1596, 2624 |
| Bpu14I | TTCGAA | 2 cut(s) | 412, 1480 |
| BpuEI | CTTGAG | 1 cut(s) | 3233 |
| BpuMI | CCSGG | 2 cut(s) | 1880, 2437 |
| Bsa29I | ATCGAT | 1 cut(s) | 132 |
| BsaBI | GATNNNNATC | 3 cut(s) | 291, 444, 3027 |
| BsaJI | CCNNGG | 6 cut(s) | 1353, 1503, 2066, 2328, 2754, 3285 |
| BsaWI | WCCGGW | 3 cut(s) | 253, 1106, 1189 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 814, 3128, 3904 |
| Bse3DI | GCAATG | 1 cut(s) | 2151 |
| Bse8I | GATNNNNATC | 3 cut(s) | 291, 444, 3027 |
| BseBI | CCWGG | 3 cut(s) | 2035, 2756, 3286 |
| BseCI | ATCGAT | 1 cut(s) | 132 |
| BseDI | CCNNGG | 6 cut(s) | 1353, 1503, 2066, 2328, 2754, 3285 |
| BseJI | GATNNNNATC | 3 cut(s) | 291, 444, 3027 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 814, 3128, 3904 |
| BseMI | GCAATG | 1 cut(s) | 2151 |
| BseRI | GAGGAG | 3 cut(s) | 449, 1600, 2913 |
| BseXI | GCAGC | 8 cut(s) | 140, 937, 1153, 1736, 2092, 2272, 2608, 3085 |
| Bsh1236I | CGCG | 1 cut(s) | 1818 |
| BshFI | GGCC | 6 cut(s) | 194, 978, 1518, 1959, 3001, 3133 |
| BshNI | GGYRCC | 2 cut(s) | 486, 3089 |
| BshVI | ATCGAT | 1 cut(s) | 132 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2499, 2619 |
| BsiSI | CCGG | 5 cut(s) | 254, 1107, 1190, 1879, 2437 |
| BslFI | GGGAC | 3 cut(s) | 856, 1889, 1895 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 814, 3128, 3904 |
| BsmAI | GTCTC | 7 cut(s) | 349, 715, 1621, 1931, 3112, 3290, 3884 |
| BsmFI | GGGAC | 3 cut(s) | 856, 1889, 1895 |
| BsnI | GGCC | 6 cut(s) | 194, 978, 1518, 1959, 3001, 3133 |
| Bsp119I | TTCGAA | 2 cut(s) | 412, 1480 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2422, 2499, 2619 |
| Bsp1407I | TGTACA | 1 cut(s) | 3115 |
| BspACI | CCGC | 5 cut(s) | 215, 1657, 2142, 2711, 3747 |
| BspANI | GGCC | 6 cut(s) | 194, 978, 1518, 1959, 3001, 3133 |
| BspDI | ATCGAT | 1 cut(s) | 132 |
| BspFNI | CGCG | 1 cut(s) | 1818 |
| BspHI | TCATGA | 1 cut(s) | 3804 |
| BspLI | GGNNCC | 7 cut(s) | 488, 1396, 1877, 2229, 2326, 2797, 3091 |
| BspMI | ACCTGC | 1 cut(s) | 3443 |
| BspOI | GCTAGC | 1 cut(s) | 2522 |
| BspPI | GGATC | 9 cut(s) | 287, 427, 506, 1691, 1744, 2255, 2867, 2966, 3448 |
| BspQI | GCTCTTC | 1 cut(s) | 3342 |
| BspT104I | TTCGAA | 2 cut(s) | 412, 1480 |
| BspT107I | GGYRCC | 2 cut(s) | 486, 3089 |
| BspTI | CTTAAG | 2 cut(s) | 929, 1292 |
| BsrBI | CCGCTC | 1 cut(s) | 3747 |
| BsrDI | GCAATG | 1 cut(s) | 2151 |
| BsrGI | TGTACA | 1 cut(s) | 3115 |
| BssECI | CCNNGG | 6 cut(s) | 1353, 1503, 2066, 2328, 2754, 3285 |
| BssSI | CACGAG | 1 cut(s) | 809 |
| BssT1I | CCWWGG | 4 cut(s) | 1353, 1503, 2066, 2328 |
| Bst2BI | CACGAG | 1 cut(s) | 809 |
| Bst2UI | CCWGG | 3 cut(s) | 2035, 2756, 3286 |
| Bst6I | CTCTTC | 2 cut(s) | 2094, 3342 |
| BstAFI | CTTAAG | 2 cut(s) | 929, 1292 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1245 |
| BstAUI | TGTACA | 1 cut(s) | 3115 |
| BstBI | TTCGAA | 2 cut(s) | 412, 1480 |
| BstC8I | GCNNGC | 8 cut(s) | 158, 178, 215, 1512, 1516, 2520, 2729, 3245 |
| BstEII | GGTNACC | 1 cut(s) | 3914 |
| BstFNI | CGCG | 1 cut(s) | 1818 |
| BstH2I | RGCGCY | 1 cut(s) | 1260 |
| BstHHI | GCGC | 2 cut(s) | 1259, 3833 |
| BstMAI | GTCTC | 7 cut(s) | 349, 715, 1621, 1931, 3112, 3290, 3884 |
| BstNI | CCWGG | 3 cut(s) | 2035, 2756, 3286 |
| BstNSI | RCATGY | 3 cut(s) | 180, 249, 3247 |
| BstPI | GGTNACC | 1 cut(s) | 3914 |
| BstSCI | CCNGG | 5 cut(s) | 1878, 2033, 2435, 2754, 3284 |
| BstSFI | CTRYAG | 1 cut(s) | 1407 |
| BstUI | CGCG | 1 cut(s) | 1818 |
| BstV1I | GCAGC | 8 cut(s) | 140, 937, 1153, 1736, 2092, 2272, 2608, 3085 |
| BstV2I | GAAGAC | 4 cut(s) | 1491, 1864, 2900, 3084 |
| BstX2I | RGATCY | 4 cut(s) | 1132, 1736, 3034, 3193 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2146, 3623 |
| BstYI | RGATCY | 4 cut(s) | 1132, 1736, 3034, 3193 |
| Bsu15I | ATCGAT | 1 cut(s) | 132 |
| BsuI | GTATCC | 1 cut(s) | 643 |
| BsuRI | GGCC | 6 cut(s) | 194, 978, 1518, 1959, 3001, 3133 |
| BsuTUI | ATCGAT | 1 cut(s) | 132 |
| BtsI | GCAGTG | 2 cut(s) | 1255, 3093 |
| BtsIMutI | CAGTG | 9 cut(s) | 160, 339, 782, 1255, 1775, 2589, 2891, 3093, 3405 |
| BveI | ACCTGC | 1 cut(s) | 3443 |
| Cac8I | GCNNGC | 8 cut(s) | 158, 178, 215, 1512, 1516, 2520, 2729, 3245 |
| CaiI | CAGNNNCTG | 2 cut(s) | 797, 1385 |
| CciI | TCATGA | 1 cut(s) | 3804 |
| CfoI | GCGC | 2 cut(s) | 1259, 3833 |
| ClaI | ATCGAT | 1 cut(s) | 132 |
| CseI | GACGC | 1 cut(s) | 2602 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2773, 2808, 3755, 3790 |
| DraI | TTTAAA | 1 cut(s) | 1944 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1945, 3304 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1039 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1945, 3304 |
| Eam1104I | CTCTTC | 2 cut(s) | 2094, 3342 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1039 |
| EarI | CTCTTC | 2 cut(s) | 2094, 3342 |
| Eco130I | CCWWGG | 4 cut(s) | 1353, 1503, 2066, 2328 |
| Eco24I | GRGCYC | 1 cut(s) | 2422 |
| Eco47I | GGWCC | 6 cut(s) | 1357, 1876, 2325, 2718, 3383, 3497 |
| Eco57I | CTGAAG | 9 cut(s) | 810, 819, 877, 1137, 1157, 1799, 2808, 2904, 2982 |
| Eco91I | GGTNACC | 1 cut(s) | 3914 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1517, 2325, 2999 |
| EcoO65I | GGTNACC | 1 cut(s) | 3914 |
| EcoRI | GAATTC | 1 cut(s) | 27 |
| EcoRII | CCWGG | 3 cut(s) | 2033, 2754, 3284 |
| EcoT14I | CCWWGG | 4 cut(s) | 1353, 1503, 2066, 2328 |
| EcoT22I | ATGCAT | 1 cut(s) | 182 |
| EcoT38I | GRGCYC | 1 cut(s) | 2422 |
| ErhI | CCWWGG | 4 cut(s) | 1353, 1503, 2066, 2328 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1359, 1391 |
| FaqI | GGGAC | 3 cut(s) | 856, 1889, 1895 |
| FauI | CCCGC | 1 cut(s) | 222 |
| FbaI | TGATCA | 2 cut(s) | 240, 3402 |
| Fnu4HI | GCNGC | 8 cut(s) | 154, 926, 1142, 1725, 2106, 2286, 2597, 3099 |
| FriOI | GRGCYC | 1 cut(s) | 2422 |
| Fsp4HI | GCNGC | 8 cut(s) | 154, 926, 1142, 1725, 2106, 2286, 2597, 3099 |
| FspBI | CTAG | 9 cut(s) | 1197, 1260, 1560, 1730, 2093, 2519, 2732, 2790, 3567 |
| GlaI | GCGC | 2 cut(s) | 1258, 3832 |
| GluI | GCNGC | 8 cut(s) | 154, 926, 1142, 1725, 2106, 2286, 2597, 3099 |
| GsuI | CTGGAG | 2 cut(s) | 1381, 2444 |
| HaeII | RGCGCY | 1 cut(s) | 1260 |
| HaeIII | GGCC | 6 cut(s) | 194, 978, 1518, 1959, 3001, 3133 |
| HapII | CCGG | 5 cut(s) | 254, 1107, 1190, 1879, 2437 |
| HgaI | GACGC | 1 cut(s) | 2602 |
| HhaI | GCGC | 2 cut(s) | 1259, 3833 |
| Hin6I | GCGC | 2 cut(s) | 1257, 3831 |
| HinP1I | GCGC | 2 cut(s) | 1257, 3831 |
| HincII | GTYRAC | 2 cut(s) | 55, 1093 |
| HindII | GTYRAC | 2 cut(s) | 55, 1093 |
| HindIII | AAGCTT | 3 cut(s) | 998, 1289, 1703 |
| HpaI | GTTAAC | 1 cut(s) | 55 |
| HpaII | CCGG | 5 cut(s) | 254, 1107, 1190, 1879, 2437 |
| Hpy166II | GTNNAC | 7 cut(s) | 55, 899, 1093, 1976, 2016, 2936, 3497 |
| Hpy8I | GTNNAC | 7 cut(s) | 55, 899, 1093, 1976, 2016, 2936, 3497 |
| HpyCH4IV | ACGT | 5 cut(s) | 104, 750, 1867, 2054, 2938 |
| HpySE526I | ACGT | 5 cut(s) | 104, 750, 1867, 2054, 2938 |
| HspAI | GCGC | 2 cut(s) | 1257, 3831 |
| KpnI | GGTACC | 1 cut(s) | 490 |
| Ksp22I | TGATCA | 2 cut(s) | 240, 3402 |
| KspAI | GTTAAC | 1 cut(s) | 55 |
| LguI | GCTCTTC | 1 cut(s) | 3342 |
| LmnI | GCTCC | 3 cut(s) | 273, 1213, 1400 |
| Lsp1109I | GCAGC | 8 cut(s) | 140, 937, 1153, 1736, 2092, 2272, 2608, 3085 |
| MaeI | CTAG | 9 cut(s) | 1197, 1260, 1560, 1730, 2093, 2519, 2732, 2790, 3567 |
| MaeII | ACGT | 5 cut(s) | 104, 750, 1867, 2054, 2938 |
| MaeIII | GTNAC | 6 cut(s) | 692, 2179, 2526, 2780, 2878, 3914 |
| MbiI | CCGCTC | 1 cut(s) | 3747 |
| MfeI | CAATTG | 2 cut(s) | 187, 459 |
| MflI | RGATCY | 4 cut(s) | 1132, 1736, 3034, 3193 |
| MhlI | GDGCHC | 3 cut(s) | 2422, 2499, 2619 |
| MlyI | GAGTC | 3 cut(s) | 821, 1376, 2009 |
| MmeI | TCCRAC | 5 cut(s) | 700, 795, 1779, 2745, 3699 |
| Mph1103I | ATGCAT | 1 cut(s) | 182 |
| MslI | CAYNNNNRTG | 2 cut(s) | 541, 2144 |
| MspA1I | CMGCKG | 1 cut(s) | 701 |
| MspCI | CTTAAG | 2 cut(s) | 929, 1292 |
| MspI | CCGG | 5 cut(s) | 254, 1107, 1190, 1879, 2437 |
| MspR9I | CCNGG | 5 cut(s) | 1880, 2035, 2437, 2756, 3286 |
| MunI | CAATTG | 2 cut(s) | 187, 459 |
| MvaI | CCWGG | 3 cut(s) | 2035, 2756, 3286 |
| MvnI | CGCG | 1 cut(s) | 1818 |
| NciI | CCSGG | 2 cut(s) | 1880, 2437 |
| NheI | GCTAGC | 1 cut(s) | 2518 |
| NlaIV | GGNNCC | 7 cut(s) | 488, 1396, 1877, 2229, 2326, 2797, 3091 |
| NmuCI | GTSAC | 3 cut(s) | 692, 2179, 3914 |
| NsiI | ATGCAT | 1 cut(s) | 182 |
| NspI | RCATGY | 3 cut(s) | 180, 249, 3247 |
| NspV | TTCGAA | 2 cut(s) | 412, 1480 |
| PaeI | GCATGC | 2 cut(s) | 180, 3247 |
| PagI | TCATGA | 1 cut(s) | 3804 |
| PciI | ACATGT | 1 cut(s) | 245 |
| PciSI | GCTCTTC | 1 cut(s) | 3342 |
| PkrI | GCNGC | 8 cut(s) | 155, 927, 1143, 1726, 2107, 2287, 2598, 3100 |
| PleI | GAGTC | 3 cut(s) | 820, 1376, 2008 |
| PpsI | GAGTC | 3 cut(s) | 820, 1376, 2008 |
| PpuMI | RGGWCCY | 1 cut(s) | 2325 |
| PscI | ACATGT | 1 cut(s) | 245 |
| PshBI | ATTAAT | 1 cut(s) | 2691 |
| PsiI | TTATAA | 1 cut(s) | 3925 |
| Psp1406I | AACGTT | 1 cut(s) | 750 |
| Psp5II | RGGWCCY | 1 cut(s) | 2325 |
| Psp6I | CCWGG | 3 cut(s) | 2033, 2754, 3284 |
| PspEI | GGTNACC | 1 cut(s) | 3914 |
| PspGI | CCWGG | 3 cut(s) | 2033, 2754, 3284 |
| PspN4I | GGNNCC | 7 cut(s) | 488, 1396, 1877, 2229, 2326, 2797, 3091 |
| PspPPI | RGGWCCY | 1 cut(s) | 2325 |
| PstNI | CAGNNNCTG | 2 cut(s) | 797, 1385 |
| PsuI | RGATCY | 4 cut(s) | 1132, 1736, 3034, 3193 |
| PvuII | CAGCTG | 1 cut(s) | 701 |
| RseI | CAYNNNNRTG | 2 cut(s) | 541, 2144 |
| SapI | GCTCTTC | 1 cut(s) | 3342 |
| SatI | GCNGC | 8 cut(s) | 154, 926, 1142, 1725, 2106, 2286, 2597, 3099 |
| ScaI | AGTACT | 2 cut(s) | 940, 3205 |
| SchI | GAGTC | 3 cut(s) | 821, 1376, 2009 |
| ScrFI | CCNGG | 5 cut(s) | 1880, 2035, 2437, 2756, 3286 |
| SduI | GDGCHC | 3 cut(s) | 2422, 2499, 2619 |
| SfcI | CTRYAG | 1 cut(s) | 1407 |
| SfuI | TTCGAA | 2 cut(s) | 412, 1480 |
| SinI | GGWCC | 6 cut(s) | 1357, 1876, 2325, 2718, 3383, 3497 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 541, 2144 |
| SmlI | CTYRAG | 3 cut(s) | 929, 1292, 3248 |
| SmoI | CTYRAG | 3 cut(s) | 929, 1292, 3248 |
| SphI | GCATGC | 2 cut(s) | 180, 3247 |
| SsiI | CCGC | 5 cut(s) | 215, 1657, 2142, 2711, 3747 |
| SspI | AATATT | 3 cut(s) | 1163, 1467, 2080 |
| SspMI | CTAG | 9 cut(s) | 1197, 1260, 1560, 1730, 2093, 2519, 2732, 2790, 3567 |
| StyD4I | CCNGG | 5 cut(s) | 1878, 2033, 2435, 2754, 3284 |
| StyI | CCWWGG | 4 cut(s) | 1353, 1503, 2066, 2328 |
| TaiI | ACGT | 5 cut(s) | 107, 753, 1870, 2057, 2941 |
| TaqI | TCGA | 7 cut(s) | 132, 183, 412, 935, 1480, 2186, 3110 |
| TatI | WGTACW | 5 cut(s) | 938, 1444, 3115, 3203, 3223 |
| TscAI | CASTG | 9 cut(s) | 167, 346, 789, 1255, 1782, 2589, 2898, 3100, 3405 |
| TseFI | GTSAC | 3 cut(s) | 692, 2179, 3914 |
| TseI | GCWGC | 8 cut(s) | 153, 925, 1141, 1724, 2105, 2285, 2596, 3098 |
| Tsp45I | GTSAC | 3 cut(s) | 692, 2179, 3914 |
| TspGWI | ACGGA | 1 cut(s) | 2681 |
| TspRI | CASTG | 9 cut(s) | 167, 346, 789, 1255, 1782, 2589, 2898, 3100, 3405 |
| Vha464I | CTTAAG | 2 cut(s) | 929, 1292 |
| VpaK11BI | GGWCC | 6 cut(s) | 1357, 1876, 2325, 2718, 3383, 3497 |
| VspI | ATTAAT | 1 cut(s) | 2691 |
| XapI | RAATTY | 9 cut(s) | 10, 27, 230, 373, 1822, 1895, 3277, 3410, 3429 |
| XceI | RCATGY | 3 cut(s) | 180, 249, 3247 |
| XspI | CTAG | 9 cut(s) | 1197, 1260, 1560, 1730, 2093, 2519, 2732, 2790, 3567 |
| ZrmI | AGTACT | 2 cut(s) | 940, 3205 |
| Zsp2I | ATGCAT | 1 cut(s) | 182 |