Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8489007.1

Orthogroup ID

OG0006896

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2352

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8489007.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 551 bp

atggaagtgaatttagtagcaagtggaattcaagaagaagatgcttttggagttaacgagaattatcacattgacaatcctgttttggagggcgaaaatgaaacgtgtgggatttgcatggataccattatcgataggggtgttctggattgctgccagcactggttttgttttgcatgcatcgacaattgggccactattacaaatctttgcccgctttgccagaacgaatttcaagtgatcacatgtgttccggtatatgatactgttgggagcaacaaagtggatgatgatccatcttccagagatgatgattggagtgttgaagggatgaataacactgtctcatttccatcatactatattgatgaaaactcagttatctgcttggatggagatggttgcaaggttcgaagtggatcagcaaagatggaggaggattccaatcttgatacatcaattgcctgtgattcatgcgacttatggtaccatgctttctgtgtggggtttgatcctgaaagcacatctgagaatacatggttatgccccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EloA-BP1 PHD zf-C3HC4_2 zf-RING_2

Protein Analysis

183

Amino Acids

20.34

Weight (kDa)

4.05

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10930 AT4G10930
fragaria_vesca	FvH4_5g04850 FvH4_5g04850 FvH4_5g04850
malus_domestica	MD06G1109300.v1.1 MD12G1080900.v1.1 MD14G1130300.v1.1
prunus_persica	Prupe.5G122300_v2.0.a1 Prupe.5G122300_v2.0.a1 Prupe.5G122300_v2.0.a1
pyrus_communis	pycom06g10260 pycom06g10270 pycom06g10280
rosa_chinensis	RchiOBHm_Chr7g0194241
rosa_laevigata	RLG00000004207
rosa_multiflora	Rmu_co8489007.1_g000001 Rmu_sc0000901.1_g000004 Rmu_sc0009433.1_g000017
rosa_roxburghii	Rroxscaffold_3G00261470
rosa_rugosa	Rorug07G0014700
rosa_samantha	Rh7AG142000 Rh7BG142400 Rh7CG146100 Rh7DG143400
rosa_wichuraiana	Rw7G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	486
AccB1I	GGYRCC	1 cut(s)	486
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	3 cut(s)	287, 427, 506
AcsI	RAATTY	3 cut(s)	10, 27, 230
AfaI	GTAC	1 cut(s)	488
AflIII	ACRYGT	2 cut(s)	104, 245
AgsI	TTSAA	3 cut(s)	32, 236, 326
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	3 cut(s)	287, 427, 506
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	153
ApoI	RAATTY	3 cut(s)	10, 27, 230
Asp718I	GGTACC	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	192
AsuII	TTCGAA	1 cut(s)	412
BanI	GGYRCC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	5 cut(s)	304, 361, 386, 392, 424
BciVI	GTATCC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	349
BfuI	GTATCC	1 cut(s)	115
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	488
BmsI	GCATC	2 cut(s)	31, 189
Bpu14I	TTCGAA	1 cut(s)	412
Bsa29I	ATCGAT	1 cut(s)	132
BsaBI	GATNNNNATC	2 cut(s)	291, 444
BsaWI	WCCGGW	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	167
Bse8I	GATNNNNATC	2 cut(s)	291, 444
BseCI	ATCGAT	1 cut(s)	132
BseGI	GGATG	3 cut(s)	292, 336, 397
BseJI	GATNNNNATC	2 cut(s)	291, 444
BseMII	CTCAG	2 cut(s)	390, 519
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	1 cut(s)	140
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	486
BshVI	ATCGAT	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	412
Bsp143I	GATC	4 cut(s)	240, 292, 419, 511
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	2 cut(s)	389, 520
BspDI	ATCGAT	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	488
BspPI	GGATC	3 cut(s)	287, 427, 506
BspT104I	TTCGAA	1 cut(s)	412
BspT107I	GGYRCC	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	167
BssMI	GATC	4 cut(s)	240, 292, 419, 511
Bst4CI	ACNGT	2 cut(s)	268, 343
BstBI	TTCGAA	1 cut(s)	412
BstC8I	GCNNGC	3 cut(s)	158, 178, 215
BstDEI	CTNAG	2 cut(s)	376, 528
BstF5I	GGATG	3 cut(s)	292, 336, 397
BstKTI	GATC	4 cut(s)	243, 295, 422, 514
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	4 cut(s)	240, 292, 419, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstNSI	RCATGY	2 cut(s)	180, 249
BstV1I	GCAGC	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	194
BsuTUI	ATCGAT	1 cut(s)	132
BtsCI	GGATG	3 cut(s)	292, 336, 397
BtsIMutI	CAGTG	2 cut(s)	160, 339
Cac8I	GCNNGC	3 cut(s)	158, 178, 215
Cfr13I	GGNCC	1 cut(s)	192
ClaI	ATCGAT	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	6 cut(s)	118, 177, 246, 474, 491, 537
CviJI	RGCY	1 cut(s)	194
CviKI_1	RGCY	1 cut(s)	194
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	2 cut(s)	376, 528
DpnI	GATC	4 cut(s)	242, 294, 421, 513
DpnII	GATC	4 cut(s)	240, 292, 419, 511
EcoRI	GAATTC	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	182
FaeI	CATG	6 cut(s)	121, 180, 249, 477, 494, 540
FatI	CATG	6 cut(s)	117, 176, 245, 473, 490, 536
FauI	CCCGC	1 cut(s)	222
FbaI	TGATCA	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	3 cut(s)	299, 343, 404
Fsp4HI	GCNGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	1 cut(s)	254
Hin1II	CATG	6 cut(s)	121, 180, 249, 477, 494, 540
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	2 cut(s)	440, 470
HpaI	GTTAAC	1 cut(s)	55
HpaII	CCGG	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	529
Hpy188III	TCNNGA	5 cut(s)	32, 146, 303, 449, 515
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	2 cut(s)	268, 343
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	4 cut(s)	117, 176, 180, 405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	2 cut(s)	376, 528
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	6 cut(s)	121, 180, 249, 477, 494, 540
KpnI	GGTACC	1 cut(s)	490
Ksp22I	TGATCA	1 cut(s)	240
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	240, 292, 419, 511
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	9 cut(s)	93, 131, 148, 170, 236, 267, 316, 478, 528
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	2 cut(s)	31, 189
MaeII	ACGT	1 cut(s)	104
MalI	GATC	4 cut(s)	242, 294, 421, 513
MboI	GATC	4 cut(s)	240, 292, 419, 511
MboII	GAAGA	3 cut(s)	47, 50, 291
MfeI	CAATTG	2 cut(s)	187, 459
MluCI	AATT	6 cut(s)	10, 27, 61, 187, 230, 459
MnlI	CCTC	3 cut(s)	82, 427, 430
Mph1103I	ATGCAT	1 cut(s)	182
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	541
MspI	CCGG	1 cut(s)	254
MunI	CAATTG	2 cut(s)	187, 459
MwoI	GCNNNNNNNGC	1 cut(s)	219
NdeII	GATC	4 cut(s)	240, 292, 419, 511
NlaIII	CATG	6 cut(s)	121, 180, 249, 477, 494, 540
NlaIV	GGNNCC	1 cut(s)	488
NsiI	ATGCAT	1 cut(s)	182
NspI	RCATGY	2 cut(s)	180, 249
NspV	TTCGAA	1 cut(s)	412
PaeI	GCATGC	1 cut(s)	180
PciI	ACATGT	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	440, 470
PkrI	GCNGC	1 cut(s)	155
PscI	ACATGT	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	488
PspPI	GGNCC	1 cut(s)	192
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	1 cut(s)	541
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	4 cut(s)	240, 292, 419, 511
Sau96I	GGNCC	1 cut(s)	192
SetI	ASST	2 cut(s)	107, 411
SfaNI	GCATC	2 cut(s)	31, 189
SfuI	TTCGAA	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	541
SphI	GCATGC	1 cut(s)	180
Sse9I	AATT	6 cut(s)	10, 27, 61, 187, 230, 459
SsiI	CCGC	1 cut(s)	215
TaaI	ACNGT	2 cut(s)	268, 343
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	3 cut(s)	132, 183, 412
TasI	AATT	6 cut(s)	10, 27, 61, 187, 230, 459
TfiI	GAWTC	2 cut(s)	440, 470
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	167, 346
TseI	GCWGC	1 cut(s)	153
TspDTI	ATGAA	4 cut(s)	114, 347, 384, 462
TspRI	CASTG	2 cut(s)	167, 346
XapI	RAATTY	3 cut(s)	10, 27, 230
XceI	RCATGY	2 cut(s)	180, 249
Zsp2I	ATGCAT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.