pycom06g10260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0006896
Physical Location & Seq
Forward (+)
15628742 .. 15630042
1301 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10260.4

Sequence Viewer

Length: 870 bp
ATGACAAAAAAATCAGATGCAGGTTCAGTCCAGAGGTCTAACAAACAGTATGGTCCAGAAAATCCTAATGGTGAACCTGAAGCTGAGGATAATCTTTCTAGAAAGGTATCTGTTTCTGTTGCTGATAGTGGTGAGACAGCTGTTGTGGTCTCAATGGCTGGCGAAAATCATGGGTATGGAAAACCAGGTGAGAGCATTTTGCCAACCGGTGAAGTTGGAAAGGACCTGAAGTCTAAAGAATTGGTATTGTCCACTGACGATAGCCACAAGTTGGAAAAACCTTCCTGGGAAAGAAATATTAACCAACCAGTTCTTGAAGCTCAGCAACTAAAACTGTCCCTGTCCAGTGATACCTCCAGTTTACCTTCAAATTCTTTAGCACCAAAGCAGTTAAGGATGAGTACTGATGGATCAACGAATGAGCCTAGTAGTTTTGATGGCATCACGAATGCTTCTGGAAAGACCTTTGATGAATCACAGATTAGTAACAGACAGTCTGACAATGACTCCAATGTGGGTCTTCATCTTGGGTTATCCGTGGGCTCGTTTTTGTCTGCTGCTGACATGAATAATAATGACACTGAAGATGTGAAGCAGCACAATCCTTCAGAAGAATATTTTTCAAAGGCTGACACTCTCATACCAAAAGAAGTGACTGACGATGTGAAGCAGCACGATCCTTGGGAAGGATATTCACCTATAGATGCTAATTTGGATGCCCCTCGATCGACTGCTGGTGGAAAGAGAAAGCGTATTGATTGCAGGTCACTTGTCATTCTTATACGGTTTTCAGCAATTAGTGCTAGCTATGAGCCTCAGGTTTTGTTACTGCTATCCTCAATTCATATGATGTCACCATCAGTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EloA-BP1 PHD zf-C3HC4_2 zf-RING_2

Protein Analysis

290

Amino Acids

31.24

Weight (kDa)

4.94

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 11, 753
AccB7I CCANNNNNTGG 1 cut(s) 271
AclWI GGATC 2 cut(s) 418, 671
AcsI RAATTY 1 cut(s) 370
AcuI CTGAAG 4 cut(s) 99, 248, 591, 603
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 2 cut(s) 271, 686
AgeI ACCGGT 1 cut(s) 206
AgsI TTSAA 3 cut(s) 317, 369, 624
AhdI GACNNNNNGTC 1 cut(s) 229
AjnI CCWGG 2 cut(s) 184, 284
AluBI AGCT 4 cut(s) 83, 140, 320, 807
AluI AGCT 4 cut(s) 83, 140, 320, 807
Alw26I GTCTC 2 cut(s) 128, 154
AlwI GGATC 2 cut(s) 418, 671
ApeKI GCWGC 3 cut(s) 557, 595, 670
ApoI RAATTY 1 cut(s) 370
AsiGI ACCGGT 1 cut(s) 206
AspS9I GGNCC 2 cut(s) 53, 223
AsuHPI GGTGA 6 cut(s) 83, 143, 200, 221, 687, 846
AsuNHI GCTAGC 1 cut(s) 803
AvaII GGWCC 2 cut(s) 53, 223
AxyI CCTNAGG 1 cut(s) 816
BanII GRGCYC 1 cut(s) 545
BbsI GAAGAC 1 cut(s) 512
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 544, 607, 682
BccI CCATC 3 cut(s) 401, 431, 865
BciT130I CCWGG 2 cut(s) 186, 286
BcoDI GTCTC 2 cut(s) 128, 154
BfaI CTAG 3 cut(s) 99, 426, 804
BfmI CTRYAG 1 cut(s) 699
BfuAI ACCTGC 2 cut(s) 11, 753
BisI GCNGC 3 cut(s) 558, 596, 671
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 3 cut(s) 559, 597, 672
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 2 cut(s) 186, 286
Bme18I GGWCC 2 cut(s) 53, 223
BmeRI GACNNNNNGTC 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 53, 223
BmrFI CCNGG 2 cut(s) 186, 286
BmsI GCATC 4 cut(s) 7, 450, 694, 706
BmtI GCTAGC 1 cut(s) 807
BpiI GAAGAC 1 cut(s) 512
BpmI CTGGAG 1 cut(s) 340
Bpu10I CCTNAGC 1 cut(s) 84
Bpu1102I GCTNAGC 1 cut(s) 321
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 3 cut(s) 285, 537, 680
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 686
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 3 cut(s) 308, 345, 357
Bse21I CCTNAGG 1 cut(s) 816
BseBI CCWGG 2 cut(s) 186, 286
BseDI CCNNGG 3 cut(s) 285, 537, 680
BseGI GGATG 2 cut(s) 402, 721
BseLI CCNNNNNNNGG 2 cut(s) 271, 686
BseMII CTCAG 3 cut(s) 75, 335, 830
BseNI ACTGG 3 cut(s) 308, 345, 357
BseXI GCAGC 3 cut(s) 544, 607, 682
Bsh1285I CGRYCG 1 cut(s) 728
BshTI ACCGGT 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 728
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 2 cut(s) 271, 686
BsmAI GTCTC 2 cut(s) 128, 154
BsmFI GGGAC 1 cut(s) 322
BsmI GAATGC 1 cut(s) 454
Bso31I GGTCTC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 545
Bsp143I GATC 3 cut(s) 410, 676, 725
Bsp1720I GCTNAGC 1 cut(s) 321
BspCNI CTCAG 3 cut(s) 76, 334, 829
BspMI ACCTGC 2 cut(s) 11, 753
BspOI GCTAGC 1 cut(s) 807
BspPI GGATC 2 cut(s) 418, 671
BspTNI GGTCTC 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 3 cut(s) 308, 345, 357
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 3 cut(s) 285, 537, 680
BssMI GATC 3 cut(s) 410, 676, 725
BssT1I CCWWGG 1 cut(s) 680
Bst2UI CCWGG 2 cut(s) 186, 286
Bst4CI ACNGT 4 cut(s) 48, 336, 495, 786
BstAPI GCANNNNNTGC 1 cut(s) 800
BstC8I GCNNGC 2 cut(s) 160, 805
BstDEI CTNAG 3 cut(s) 84, 321, 816
BstDSI CCRYGG 1 cut(s) 537
BstENI CCTNNNNNAGG 1 cut(s) 684
BstF5I GGATG 2 cut(s) 402, 721
BstKTI GATC 3 cut(s) 413, 679, 728
BstMAI GTCTC 2 cut(s) 128, 154
BstMBI GATC 3 cut(s) 410, 676, 725
BstMCI CGRYCG 1 cut(s) 728
BstMWI GCNNNNNNNGC 1 cut(s) 800
BstNI CCWGG 2 cut(s) 186, 286
BstSCI CCNGG 2 cut(s) 184, 284
BstSFI CTRYAG 1 cut(s) 699
BstV1I GCAGC 3 cut(s) 544, 607, 682
BstV2I GAAGAC 1 cut(s) 512
Bsu36I CCTNAGG 1 cut(s) 816
BtgI CCRYGG 1 cut(s) 537
BtsCI GGATG 2 cut(s) 402, 721
BtsIMutI CAGTG 3 cut(s) 252, 352, 579
BveI ACCTGC 2 cut(s) 11, 753
Cac8I GCNNGC 2 cut(s) 160, 805
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 53, 223
CsiI ACCWGGT 1 cut(s) 184
Csp6I GTAC 1 cut(s) 402
CspAI ACCGGT 1 cut(s) 206
CviAII CATG 3 cut(s) 170, 565, 865
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 3 cut(s) 84, 321, 816
DpnI GATC 3 cut(s) 412, 678, 727
DpnII GATC 3 cut(s) 410, 676, 725
DriI GACNNNNNGTC 1 cut(s) 229
Eam1105I GACNNNNNGTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 680
Eco24I GRGCYC 1 cut(s) 545
Eco31I GGTCTC 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 53, 223
Eco57I CTGAAG 4 cut(s) 99, 248, 591, 603
Eco81I CCTNAGG 1 cut(s) 816
EcoNI CCTNNNNNAGG 1 cut(s) 684
EcoO109I RGGNCCY 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 184, 284
EcoT14I CCWWGG 1 cut(s) 680
EcoT38I GRGCYC 1 cut(s) 545
ErhI CCWWGG 1 cut(s) 680
FaeI CATG 3 cut(s) 173, 568, 868
FaqI GGGAC 1 cut(s) 322
FatI CATG 3 cut(s) 169, 564, 864
FauNDI CATATG 1 cut(s) 846
Fnu4HI GCNGC 3 cut(s) 558, 596, 671
FokI GGATG 2 cut(s) 409, 728
FriOI GRGCYC 1 cut(s) 545
Fsp4HI GCNGC 3 cut(s) 558, 596, 671
FspBI CTAG 3 cut(s) 99, 426, 804
GluI GCNGC 3 cut(s) 558, 596, 671
GsuI CTGGAG 1 cut(s) 340
HapII CCGG 1 cut(s) 207
Hin1II CATG 3 cut(s) 173, 568, 868
HinfI GANTC 2 cut(s) 473, 506
HpaII CCGG 1 cut(s) 207
HphI GGTGA 6 cut(s) 83, 143, 200, 221, 687, 846
Hpy166II GTNNAC 3 cut(s) 74, 252, 362
Hpy188I TCNGA 3 cut(s) 16, 499, 610
Hpy188III TCNNGA 6 cut(s) 31, 56, 99, 314, 445, 456
Hpy8I GTNNAC 3 cut(s) 74, 252, 362
HpyAV CCTTC 4 cut(s) 291, 375, 615, 680
HpyCH4III ACNGT 4 cut(s) 48, 336, 495, 786
HpyCH4V TGCA 2 cut(s) 20, 762
HpyF10VI GCNNNNNNNGC 1 cut(s) 800
HpyF3I CTNAG 3 cut(s) 84, 321, 816
Hsp92II CATG 3 cut(s) 173, 568, 868
Kzo9I GATC 3 cut(s) 410, 676, 725
Lsp1109I GCAGC 3 cut(s) 544, 607, 682
LweI GCATC 4 cut(s) 7, 450, 694, 706
MabI ACCWGGT 1 cut(s) 184
MaeI CTAG 3 cut(s) 99, 426, 804
MaeIII GTNAC 5 cut(s) 485, 652, 765, 825, 852
MalI GATC 3 cut(s) 412, 678, 727
MboI GATC 3 cut(s) 410, 676, 725
MboII GAAGA 3 cut(s) 512, 596, 623
MhlI GDGCHC 1 cut(s) 545
MluCI AATT 5 cut(s) 239, 370, 709, 795, 840
MlyI GAGTC 1 cut(s) 500
MmeI TCCRAC 2 cut(s) 196, 252
MnlI CCTC 6 cut(s) 27, 79, 364, 732, 825, 847
MseI TTAA 2 cut(s) 300, 392
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 2 cut(s) 186, 286
Mva1269I GAATGC 1 cut(s) 454
MvaI CCWGG 2 cut(s) 186, 286
MwoI GCNNNNNNNGC 1 cut(s) 800
NdeI CATATG 1 cut(s) 846
NdeII GATC 3 cut(s) 410, 676, 725
NheI GCTAGC 1 cut(s) 803
NlaIII CATG 3 cut(s) 173, 568, 868
NmuCI GTSAC 3 cut(s) 652, 765, 852
PctI GAATGC 1 cut(s) 454
PfeI GAWTC 1 cut(s) 473
PflMI CCANNNNNTGG 1 cut(s) 271
PinAI ACCGGT 1 cut(s) 206
PkrI GCNGC 3 cut(s) 559, 597, 672
Ple19I CGATCG 1 cut(s) 728
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
PpuMI RGGWCCY 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 184, 284
PspGI CCWGG 2 cut(s) 184, 284
PspPI GGNCC 2 cut(s) 53, 223
PspPPI RGGWCCY 1 cut(s) 223
PvuI CGATCG 1 cut(s) 728
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 2 cut(s) 300, 392
SatI GCNGC 3 cut(s) 558, 596, 671
Sau3AI GATC 3 cut(s) 410, 676, 725
Sau96I GGNCC 2 cut(s) 53, 223
ScaI AGTACT 1 cut(s) 403
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 2 cut(s) 186, 286
SduI GDGCHC 1 cut(s) 545
SexAI ACCWGGT 1 cut(s) 184
SfaNI GCATC 4 cut(s) 7, 450, 694, 706
SfcI CTRYAG 1 cut(s) 699
SinI GGWCC 2 cut(s) 53, 223
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 5 cut(s) 239, 370, 709, 795, 840
SspI AATATT 2 cut(s) 298, 617
SspMI CTAG 3 cut(s) 99, 426, 804
StyD4I CCNGG 2 cut(s) 184, 284
StyI CCWWGG 1 cut(s) 680
TaaI ACNGT 4 cut(s) 48, 336, 495, 786
TaqI TCGA 2 cut(s) 724, 728
TasI AATT 5 cut(s) 239, 370, 709, 795, 840
TatI WGTACW 1 cut(s) 401
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 2 cut(s) 300, 392
Tru9I TTAA 2 cut(s) 300, 392
TscAI CASTG 3 cut(s) 259, 352, 586
TseFI GTSAC 3 cut(s) 652, 765, 852
TseI GCWGC 3 cut(s) 557, 595, 670
Tsp45I GTSAC 3 cut(s) 652, 765, 852
TspDTI ATGAA 4 cut(s) 486, 512, 581, 833
TspGWI ACGGA 1 cut(s) 526
TspRI CASTG 3 cut(s) 259, 352, 586
Van91I CCANNNNNTGG 1 cut(s) 271
VpaK11BI GGWCC 2 cut(s) 53, 223
XagI CCTNNNNNAGG 1 cut(s) 684
XapI RAATTY 1 cut(s) 370
XbaI TCTAGA 1 cut(s) 98
XspI CTAG 3 cut(s) 99, 426, 804
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.