Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0018111

Physical Location & Seq

Genomic Coordinates Reverse (-)

29386705 .. 29387131

Gene Structure 427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1215700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGAATAACAGTTTATCTTTCTCCGGTGTGCTGCCAAAGTATTTCAGCTCAGAGTGGTCAGCAGCTAAATATCACTTGCCGGAAGGTCTGCGGTACACTGTTGCCCTTGGCCACCAGAAGAACACGGTGGTGATTCTTGTCATGGACGGAAGCTTCTACCGATGCCAGTTTGACCCTGTAAACGGAGGAGGGATGACTCAGATTGAATACCATAACTTTCTTAAGCCCGAAGAAACCTCTGAAGTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

84

Amino Acids

9.36

Weight (kDa)

5.82

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018111)

Species	Orthologous Gene IDs
malus_domestica	MD12G1215700.v1.1 MD12G1215900.v1.1
rosa_laevigata	RLG00000002437
rosa_multiflora	Rmu_co8306773.1_g000001 Rmu_sc0010428.1_g000008
rosa_roxburghii	Rroxscaffold_1G00019200 Rroxscaffold_2G00089670 Rroxscaffold_4G00304100
rosa_rugosa	Rorug05G0261900
rosa_samantha	Rh1AG108000 Rh1CG104000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	91
AcoI	YGGCCR	1 cut(s)	109
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	182
AflII	CTTAAG	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	206
AleI	CACNNNNGTG	1 cut(s)	128
AluBI	AGCT	3 cut(s)	48, 65, 153
AluI	AGCT	3 cut(s)	48, 65, 153
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	31, 62
AsuHPI	GGTGA	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	18, 74
BfrI	CTTAAG	1 cut(s)	221
BisI	GCNGC	2 cut(s)	32, 63
BlsI	GCNGC	2 cut(s)	33, 64
BmsI	GCATC	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	106
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	2 cut(s)	63, 212
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	18, 74
BshFI	GGCC	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	24, 80
BslI	CCNNNNNNNGG	1 cut(s)	182
BsnI	GGCC	1 cut(s)	111
BspACI	CCGC	1 cut(s)	91
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	2 cut(s)	62, 211
BspTI	CTTAAG	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	106
Bst4CI	ACNGT	3 cut(s)	11, 100, 127
BstAFI	CTTAAG	1 cut(s)	221
BstDEI	CTNAG	2 cut(s)	49, 198
BstF5I	GGATG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	18, 74
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	5 cut(s)	48, 65, 111, 153, 226
CviKI_1	RGCY	5 cut(s)	48, 65, 111, 153, 226
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	49, 198
EaeI	YGGCCR	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	1 cut(s)	145
FaiI	YATR	2 cut(s)	143, 213
FatI	CATG	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	32, 63
FokI	GGATG	1 cut(s)	205
Fsp4HI	GCNGC	2 cut(s)	32, 63
GluI	GCNGC	2 cut(s)	32, 63
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	2 cut(s)	24, 80
Hin1II	CATG	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	2 cut(s)	133, 196
HpaII	CCGG	2 cut(s)	24, 80
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	96, 181
Hpy188I	TCNGA	3 cut(s)	52, 201, 241
Hpy8I	GTNNAC	2 cut(s)	96, 181
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	3 cut(s)	11, 100, 127
HpyF3I	CTNAG	2 cut(s)	49, 198
Hsp92II	CATG	1 cut(s)	145
LpnPI	CCDG	5 cut(s)	37, 93, 128, 179, 189
Lsp1109I	GCAGC	2 cut(s)	18, 74
LweI	GCATC	1 cut(s)	152
MboII	GAAGA	2 cut(s)	130, 242
MlsI	TGGCCA	1 cut(s)	111
MluNI	TGGCCA	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	3 cut(s)	179, 182, 247
Mox20I	TGGCCA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	128
Msp20I	TGGCCA	1 cut(s)	111
MspCI	CTTAAG	1 cut(s)	221
MspI	CCGG	2 cut(s)	24, 80
NlaIII	CATG	1 cut(s)	145
OliI	CACNNNNGTG	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	33, 64
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	32, 63
SchI	GAGTC	1 cut(s)	190
SetI	ASST	5 cut(s)	50, 67, 88, 155, 239
SfaNI	GCATC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SsiI	CCGC	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	3 cut(s)	11, 100, 127
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	2 cut(s)	31, 62
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	162, 198
TspRI	CASTG	1 cut(s)	103
Vha464I	CTTAAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.