Rh1CG104000

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0018111
Physical Location & Seq
Forward (+)
21420975 .. 21429491
8517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG104000.1

Sequence Viewer

Length: 309 bp
ATGGGGCACTTAGGATCAGTGAAGTACGAACTCCATCTGGAATGTAAGCAGGTTGTTAAAGCTTCAGGAGGAGCAAAAGCAGTTCATGTACCGAAAAAAGTTGAATACTTGGCTGGAATCACCATTAGGATGGTAGCTTTGAGATCAGAGCACTCGGTGGCTGTTACAGGTGTGTTGCTGCTGCCAAGGTATTTCAGCTCAAAATGGTCAGTGGCCAAATTTCACTTGCAAGAAGGTCTGCAGCATATTGTTGCCTTTGGCAAGCGGAAGAATACCTTCATGATCATTGGCATGGATGGAAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

102

Amino Acids

11.32

Weight (kDa)

10.13

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 40
AciI CCGC 1 cut(s) 265
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 48
AdeI CACNNNGTG 1 cut(s) 157
AfaI GTAC 2 cut(s) 26, 90
AgsI TTSAA 1 cut(s) 104
AluBI AGCT 3 cut(s) 62, 137, 198
AluI AGCT 3 cut(s) 62, 137, 198
Alw21I GWGCWC 1 cut(s) 153
AlwI GGATC 1 cut(s) 22
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 3 cut(s) 178, 181, 241
ApoI RAATTY 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 9
BalI TGGCCA 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 3 cut(s) 165, 168, 253
BccI CCATC 3 cut(s) 42, 124, 290
BclI TGATCA 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 3 cut(s) 179, 182, 242
BlsI GCNGC 3 cut(s) 180, 183, 243
BsaJI CCNNGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 2 cut(s) 135, 301
BseRI GAGGAG 1 cut(s) 84
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 3 cut(s) 165, 168, 253
BshFI GGCC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 153
BsnI GGCC 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 9, 153
Bsp143I GATC 3 cut(s) 14, 143, 282
BspACI CCGC 1 cut(s) 265
BspANI GGCC 1 cut(s) 215
BspHI TCATGA 1 cut(s) 279
BspMAI CTGCAG 1 cut(s) 243
BspMI ACCTGC 1 cut(s) 40
BspPI GGATC 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 3 cut(s) 14, 143, 282
BssT1I CCWWGG 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 10
BstF5I GGATG 2 cut(s) 135, 301
BstKTI GATC 3 cut(s) 17, 146, 285
BstMBI GATC 3 cut(s) 14, 143, 282
BstSFI CTRYAG 1 cut(s) 239
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 3 cut(s) 165, 168, 253
BstXI CCANNNNNNTGG 1 cut(s) 130
BsuRI GGCC 1 cut(s) 215
BtsCI GGATG 2 cut(s) 135, 301
BtsIMutI CAGTG 2 cut(s) 24, 216
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 263
CciI TCATGA 1 cut(s) 279
Csp6I GTAC 2 cut(s) 25, 89
CviAII CATG 3 cut(s) 86, 280, 292
CviJI RGCY 6 cut(s) 62, 113, 137, 161, 198, 215
CviKI_1 RGCY 6 cut(s) 62, 113, 137, 161, 198, 215
CviQI GTAC 2 cut(s) 25, 89
DdeI CTNAG 1 cut(s) 10
DpnI GATC 3 cut(s) 16, 145, 284
DpnII GATC 3 cut(s) 14, 143, 282
DraIII CACNNNGTG 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 3 cut(s) 89, 283, 295
FaiI YATR 4 cut(s) 87, 246, 281, 293
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 3 cut(s) 85, 279, 291
FbaI TGATCA 1 cut(s) 282
Fnu4HI GCNGC 3 cut(s) 179, 182, 242
FokI GGATG 1 cut(s) 142
Fsp4HI GCNGC 3 cut(s) 179, 182, 242
GluI GCNGC 3 cut(s) 179, 182, 242
HaeIII GGCC 1 cut(s) 215
Hin1II CATG 3 cut(s) 89, 283, 295
HindIII AAGCTT 1 cut(s) 60
HinfI GANTC 1 cut(s) 117
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 3 cut(s) 38, 66, 280
HpyAV CCTTC 2 cut(s) 227, 286
HpyCH4V TGCA 2 cut(s) 229, 241
HpyF3I CTNAG 1 cut(s) 10
Hsp92II CATG 3 cut(s) 89, 283, 295
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 3 cut(s) 14, 143, 282
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 5 cut(s) 23, 35, 51, 99, 153
Lsp1109I GCAGC 3 cut(s) 165, 168, 253
MaeIII GTNAC 1 cut(s) 163
MalI GATC 3 cut(s) 16, 145, 284
MboI GATC 3 cut(s) 14, 143, 282
MboII GAAGA 1 cut(s) 280
MhlI GDGCHC 2 cut(s) 9, 153
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 1 cut(s) 218
MluNI TGGCCA 1 cut(s) 215
MnlI CCTC 1 cut(s) 62
Mox20I TGGCCA 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 275
MscI TGGCCA 1 cut(s) 215
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 2 cut(s) 128, 290
Msp20I TGGCCA 1 cut(s) 215
NdeII GATC 3 cut(s) 14, 143, 282
NlaIII CATG 3 cut(s) 89, 283, 295
PagI TCATGA 1 cut(s) 279
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 3 cut(s) 180, 183, 243
PstI CTGCAG 1 cut(s) 243
RsaI GTAC 2 cut(s) 26, 90
RsaNI GTAC 2 cut(s) 25, 89
RseI CAYNNNNRTG 2 cut(s) 128, 290
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 3 cut(s) 179, 182, 242
Sau3AI GATC 3 cut(s) 14, 143, 282
SduI GDGCHC 2 cut(s) 9, 153
SetI ASST 8 cut(s) 54, 64, 139, 172, 191, 200, 238, 278
SfcI CTRYAG 1 cut(s) 239
SmiMI CAYNNNNRTG 2 cut(s) 128, 290
Sse9I AATT 1 cut(s) 218
SsiI CCGC 1 cut(s) 265
StyI CCWWGG 1 cut(s) 185
TasI AATT 1 cut(s) 218
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 2 cut(s) 24, 216
TseI GCWGC 3 cut(s) 178, 181, 241
TspDTI ATGAA 2 cut(s) 74, 268
TspRI CASTG 2 cut(s) 24, 216
XapI RAATTY 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.