Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018111

Physical Location & Seq

Genomic Coordinates Reverse (-)

34206039 .. 34212326

Gene Structure 6288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002437

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAGTGGGATTCTCCACATCCAAGGCGGCACCTATATTGGAGCCAAGTTCTGGGAGGTGCTTTGTGTCGAGCACTGCATCAACGGCTTCGGCAGAACTGTAAGTTTGGATTTAGAGAAAGTATTCCTTAAGACGAGAAGAGGATTTGTTAGCATAGCCATGGAGAATGGCTATCCCCTGGTTTCAGTTTTCTGCTTTGGTCAGGTATCACCTTCCTATTATCTAGTTTTTCATGGAGGAGCAAAAGCAGTTCATGTACCAACAAAAGCTGAATGCTTGGCTGGAATCACCATTAGGATGGAAGCTTTAGGATCAGAGCATTCAATGGCTGTTATTGATGTACGGTCATATGGGGTAACTTTATATGTGATGTTGATGGGATCATATCCTTTTGAGGATCCAAATGAACCAAAGGATTTTAGGAAGACTATACAAGCTTGGTTTTGCTACTCGATGGCTCGCGCGGTGGACTGGTTTGGTCTCGCGGGATCGAAGGGCTGGTGGTGGCATGCTTGTGGCTATCTGTTCGGGTTGGAACCCATGGATCCGATCTGGGATTGGGTTTGTTTGGCTAGGGCGGCGCTTATTCATGAGTCGTTGGGAATGGCAGCAAGTTCAAGGCGGCGTTCGGCGACTGTAGTAGGGAGGGGTTGGAAGTGGTCTGGCGGCGGAGGCTGTGGTGGGGTTGAGCTAGGCTTGGTTGGCTTCCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

238

Amino Acids

26.1

Weight (kDa)

8.1

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGAT	PF03982	37 - 70	4.8e-07	Diacylglycerol acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018111)

Species	Orthologous Gene IDs
malus_domestica	MD12G1215700.v1.1 MD12G1215900.v1.1
rosa_laevigata	RLG00000002437
rosa_multiflora	Rmu_co8306773.1_g000001 Rmu_sc0010428.1_g000008
rosa_roxburghii	Rroxscaffold_1G00019200 Rroxscaffold_2G00089670 Rroxscaffold_4G00304100
rosa_rugosa	Rorug05G0261900
rosa_samantha	Rh1AG108000 Rh1CG104000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AccB7I	CCANNNNNTGG	1 cut(s)	51
AccII	CGCG	3 cut(s)	462, 464, 485
AciI	CCGC	7 cut(s)	27, 464, 485, 578, 622, 666, 669
AclWI	GGATC	7 cut(s)	319, 388, 392, 405, 496, 539, 552
AfaI	GTAC	2 cut(s)	258, 342
AfiI	CCNNNNNNNGG	1 cut(s)	51
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	324, 618
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	4 cut(s)	269, 305, 437, 691
AluI	AGCT	4 cut(s)	269, 305, 437, 691
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	7 cut(s)	319, 388, 392, 405, 496, 539, 552
ApeKI	GCWGC	1 cut(s)	608
Asp700I	GAANNNNTTC	1 cut(s)	122
AspLEI	GCGC	2 cut(s)	464, 583
AsuHPI	GGTGA	2 cut(s)	201, 280
BamHI	GGATCC	2 cut(s)	397, 544
BanI	GGYRCC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	620
BccI	CCATC	3 cut(s)	292, 370, 448
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	3 cut(s)	224, 573, 692
BfmI	CTRYAG	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	584
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	5 cut(s)	28, 579, 609, 623, 667
BlsI	GCNGC	5 cut(s)	29, 580, 610, 624, 668
Bme1390I	CCNGG	1 cut(s)	179
BmiI	GGNNCC	5 cut(s)	31, 43, 399, 537, 546
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	431
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	4 cut(s)	22, 159, 177, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	476
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	4 cut(s)	22, 159, 177, 540
BseGI	GGATG	2 cut(s)	18, 303
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	476
BseRI	GAGGAG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	620
Bsh1236I	CGCG	3 cut(s)	462, 464, 485
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	485
BsmI	GAATGC	2 cut(s)	278, 319
Bso31I	GGTCTC	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	6 cut(s)	311, 380, 397, 488, 544, 549
Bsp19I	CCATGG	2 cut(s)	159, 540
BspACI	CCGC	7 cut(s)	27, 464, 485, 578, 622, 666, 669
BspFNI	CGCG	3 cut(s)	462, 464, 485
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	5 cut(s)	31, 43, 399, 537, 546
BspPI	GGATC	7 cut(s)	319, 388, 392, 405, 496, 539, 552
BspT107I	GGYRCC	1 cut(s)	29
BspTI	CTTAAG	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	485
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	4 cut(s)	22, 159, 177, 540
BssMI	GATC	6 cut(s)	311, 380, 397, 488, 544, 549
BssT1I	CCWWGG	3 cut(s)	22, 159, 540
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	3 cut(s)	100, 345, 637
Bst6I	CTCTTC	1 cut(s)	133
BstAFI	CTTAAG	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	460, 510
BstDSI	CCRYGG	2 cut(s)	159, 540
BstF5I	GGATG	2 cut(s)	18, 303
BstFNI	CGCG	3 cut(s)	462, 464, 485
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	2 cut(s)	464, 583
BstKTI	GATC	6 cut(s)	314, 383, 400, 491, 547, 552
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	6 cut(s)	311, 380, 397, 488, 544, 549
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 578, 672, 702
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	636
BstUI	CGCG	3 cut(s)	462, 464, 485
BstV1I	GCAGC	1 cut(s)	620
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	2 cut(s)	397, 544
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	2 cut(s)	397, 544
BtgI	CCRYGG	2 cut(s)	159, 540
BtsCI	GGATG	2 cut(s)	18, 303
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	460, 510
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	2 cut(s)	464, 583
Csp6I	GTAC	2 cut(s)	257, 341
CviAII	CATG	6 cut(s)	160, 233, 254, 509, 541, 590
CviQI	GTAC	2 cut(s)	257, 341
DpnI	GATC	6 cut(s)	313, 382, 399, 490, 546, 551
DpnII	GATC	6 cut(s)	311, 380, 397, 488, 544, 549
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
EciI	GGCGGA	1 cut(s)	684
Eco130I	CCWWGG	3 cut(s)	22, 159, 540
Eco31I	GGTCTC	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	3 cut(s)	22, 159, 540
ErhI	CCWWGG	3 cut(s)	22, 159, 540
FaeI	CATG	6 cut(s)	163, 236, 257, 512, 544, 593
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	6 cut(s)	159, 232, 253, 508, 540, 589
FauI	CCCGC	1 cut(s)	478
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	5 cut(s)	28, 579, 609, 623, 667
FokI	GGATG	2 cut(s)	5, 310
Fsp4HI	GCNGC	5 cut(s)	28, 579, 609, 623, 667
FspBI	CTAG	3 cut(s)	224, 573, 692
GlaI	GCGC	2 cut(s)	463, 582
GluI	GCNGC	5 cut(s)	28, 579, 609, 623, 667
HaeII	RGCGCY	1 cut(s)	584
HhaI	GCGC	2 cut(s)	464, 583
Hin1II	CATG	6 cut(s)	163, 236, 257, 512, 544, 593
Hin6I	GCGC	2 cut(s)	462, 581
HinP1I	GCGC	2 cut(s)	462, 581
HindIII	AAGCTT	2 cut(s)	303, 435
HinfI	GANTC	3 cut(s)	10, 285, 593
HphI	GGTGA	2 cut(s)	201, 280
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	2 cut(s)	316, 549
Hpy188III	TCNNGA	1 cut(s)	590
Hpy8I	GTNNAC	1 cut(s)	469
HpyAV	CCTTC	2 cut(s)	222, 487
HpyCH4III	ACNGT	3 cut(s)	100, 345, 637
HpyCH4V	TGCA	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 578, 672, 702
Hsp92II	CATG	6 cut(s)	163, 236, 257, 512, 544, 593
HspAI	GCGC	2 cut(s)	462, 581
Kzo9I	GATC	6 cut(s)	311, 380, 397, 488, 544, 549
LmnI	GCTCC	2 cut(s)	41, 239
LpnPI	CCDG	9 cut(s)	37, 164, 188, 191, 267, 457, 484, 538, 648
Lsp1109I	GCAGC	1 cut(s)	620
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	3 cut(s)	224, 573, 692
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	6 cut(s)	313, 382, 399, 490, 546, 551
MboI	GATC	6 cut(s)	311, 380, 397, 488, 544, 549
MboII	GAAGA	2 cut(s)	150, 436
MflI	RGATCY	2 cut(s)	397, 544
MhlI	GDGCHC	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	2 cut(s)	513, 632
MnlI	CCTC	6 cut(s)	49, 134, 230, 388, 639, 665
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	3 cut(s)	158, 296, 513
MspCI	CTTAAG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	179
Mva1269I	GAATGC	2 cut(s)	278, 319
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	3 cut(s)	462, 464, 485
MwoI	GCNNNNNNNGC	4 cut(s)	84, 578, 672, 702
NcoI	CCATGG	2 cut(s)	159, 540
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	6 cut(s)	311, 380, 397, 488, 544, 549
NlaIII	CATG	6 cut(s)	163, 236, 257, 512, 544, 593
NlaIV	GGNNCC	5 cut(s)	31, 43, 399, 537, 546
NspI	RCATGY	1 cut(s)	512
PaeI	GCATGC	1 cut(s)	512
PagI	TCATGA	1 cut(s)	589
PctI	GAATGC	2 cut(s)	278, 319
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	10, 285
PflMI	CCANNNNNTGG	1 cut(s)	51
PkrI	GCNGC	5 cut(s)	29, 580, 610, 624, 668
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	5 cut(s)	31, 43, 399, 537, 546
PsuI	RGATCY	2 cut(s)	397, 544
RsaI	GTAC	2 cut(s)	258, 342
RsaNI	GTAC	2 cut(s)	257, 341
RseI	CAYNNNNRTG	3 cut(s)	158, 296, 513
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	5 cut(s)	28, 579, 609, 623, 667
Sau3AI	GATC	6 cut(s)	311, 380, 397, 488, 544, 549
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	8 cut(s)	35, 60, 207, 214, 271, 307, 439, 693
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	636
SmiMI	CAYNNNNRTG	3 cut(s)	158, 296, 513
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SphI	GCATGC	1 cut(s)	512
SsiI	CCGC	7 cut(s)	27, 464, 485, 578, 622, 666, 669
SspMI	CTAG	3 cut(s)	224, 573, 692
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	3 cut(s)	22, 159, 540
TaaI	ACNGT	3 cut(s)	100, 345, 637
TaqI	TCGA	3 cut(s)	69, 452, 491
TauI	GCSGC	4 cut(s)	30, 581, 625, 669
TfiI	GAWTC	2 cut(s)	10, 285
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	80
TseI	GCWGC	1 cut(s)	608
TspDTI	ATGAA	4 cut(s)	221, 242, 420, 578
TspRI	CASTG	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	51
Vha464I	CTTAAG	1 cut(s)	128
XceI	RCATGY	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	3 cut(s)	224, 573, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.