Autophagy-related protein
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD12G1215700.v1.1 MD12G1215900.v1.1 |
| rosa_laevigata | RLG00000002437 |
| rosa_multiflora | Rmu_co8306773.1_g000001 Rmu_sc0010428.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00019200 Rroxscaffold_2G00089670 Rroxscaffold_4G00304100 |
| rosa_rugosa | Rorug05G0261900 |
| rosa_samantha | Rh1AG108000 Rh1CG104000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 90 |
| AcoI | YGGCCR | 1 cut(s) | 38 |
| AcsI | RAATTY | 1 cut(s) | 43 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 157 |
| AgsI | TTSAA | 2 cut(s) | 181, 198 |
| AluBI | AGCT | 3 cut(s) | 23, 128, 177 |
| AluI | AGCT | 3 cut(s) | 23, 128, 177 |
| AoxI | GGCC | 1 cut(s) | 38 |
| ApeKI | GCWGC | 3 cut(s) | 6, 66, 174 |
| ApoI | RAATTY | 1 cut(s) | 43 |
| BalI | TGGCCA | 1 cut(s) | 40 |
| BbvI | GCAGC | 2 cut(s) | 78, 186 |
| BccI | CCATC | 2 cut(s) | 109, 115 |
| BfmI | CTRYAG | 1 cut(s) | 64 |
| BisI | GCNGC | 3 cut(s) | 7, 67, 175 |
| BlsI | GCNGC | 3 cut(s) | 8, 68, 176 |
| BmsI | GCATC | 1 cut(s) | 127 |
| Bsa29I | ATCGAT | 1 cut(s) | 135 |
| BsaJI | CCNNGG | 1 cut(s) | 10 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 157 |
| BseCI | ATCGAT | 1 cut(s) | 135 |
| BseDI | CCNNGG | 1 cut(s) | 10 |
| BseGI | GGATG | 1 cut(s) | 126 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BseMII | CTCAG | 1 cut(s) | 38 |
| BseRI | GAGGAG | 1 cut(s) | 176 |
| BseXI | GCAGC | 2 cut(s) | 78, 186 |
| BshFI | GGCC | 1 cut(s) | 40 |
| BshVI | ATCGAT | 1 cut(s) | 135 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BsnI | GGCC | 1 cut(s) | 40 |
| BspACI | CCGC | 1 cut(s) | 90 |
| BspANI | GGCC | 1 cut(s) | 40 |
| BspCNI | CTCAG | 1 cut(s) | 37 |
| BspDI | ATCGAT | 1 cut(s) | 135 |
| BspHI | TCATGA | 1 cut(s) | 104 |
| BspMAI | CTGCAG | 1 cut(s) | 68 |
| BssECI | CCNNGG | 1 cut(s) | 10 |
| BssT1I | CCWWGG | 1 cut(s) | 10 |
| BstC8I | GCNNGC | 1 cut(s) | 88 |
| BstDEI | CTNAG | 1 cut(s) | 24 |
| BstF5I | GGATG | 1 cut(s) | 126 |
| BstSFI | CTRYAG | 1 cut(s) | 64 |
| BstV1I | GCAGC | 2 cut(s) | 78, 186 |
| Bsu15I | ATCGAT | 1 cut(s) | 135 |
| BsuRI | GGCC | 1 cut(s) | 40 |
| BsuTUI | ATCGAT | 1 cut(s) | 135 |
| BtsCI | GGATG | 1 cut(s) | 126 |
| Cac8I | GCNNGC | 1 cut(s) | 88 |
| CciI | TCATGA | 1 cut(s) | 104 |
| ClaI | ATCGAT | 1 cut(s) | 135 |
| CseI | GACGC | 1 cut(s) | 180 |
| CviAII | CATG | 2 cut(s) | 105, 117 |
| CviJI | RGCY | 5 cut(s) | 23, 40, 128, 177, 201 |
| CviKI_1 | RGCY | 5 cut(s) | 23, 40, 128, 177, 201 |
| DdeI | CTNAG | 1 cut(s) | 24 |
| EaeI | YGGCCR | 1 cut(s) | 38 |
| Eco130I | CCWWGG | 1 cut(s) | 10 |
| EcoT14I | CCWWGG | 1 cut(s) | 10 |
| ErhI | CCWWGG | 1 cut(s) | 10 |
| FaeI | CATG | 2 cut(s) | 108, 120 |
| FaiI | YATR | 4 cut(s) | 71, 106, 118, 188 |
| FatI | CATG | 2 cut(s) | 104, 116 |
| Fnu4HI | GCNGC | 3 cut(s) | 7, 67, 175 |
| FokI | GGATG | 1 cut(s) | 133 |
| Fsp4HI | GCNGC | 3 cut(s) | 7, 67, 175 |
| GluI | GCNGC | 3 cut(s) | 7, 67, 175 |
| HaeIII | GGCC | 1 cut(s) | 40 |
| HgaI | GACGC | 1 cut(s) | 180 |
| Hin1II | CATG | 2 cut(s) | 108, 120 |
| HindIII | AAGCTT | 1 cut(s) | 126 |
| Hpy188I | TCNGA | 1 cut(s) | 27 |
| Hpy188III | TCNNGA | 2 cut(s) | 105, 195 |
| HpyAV | CCTTC | 1 cut(s) | 52 |
| HpyCH4V | TGCA | 2 cut(s) | 54, 66 |
| HpyF3I | CTNAG | 1 cut(s) | 24 |
| Hsp92II | CATG | 2 cut(s) | 108, 120 |
| LpnPI | CCDG | 2 cut(s) | 40, 164 |
| Lsp1109I | GCAGC | 2 cut(s) | 78, 186 |
| LweI | GCATC | 1 cut(s) | 127 |
| MboII | GAAGA | 2 cut(s) | 105, 217 |
| MlsI | TGGCCA | 1 cut(s) | 40 |
| MluCI | AATT | 2 cut(s) | 43, 142 |
| MluNI | TGGCCA | 1 cut(s) | 40 |
| MnlI | CCTC | 1 cut(s) | 154 |
| Mox20I | TGGCCA | 1 cut(s) | 40 |
| MscI | TGGCCA | 1 cut(s) | 40 |
| MslI | CAYNNNNRTG | 1 cut(s) | 103 |
| Msp20I | TGGCCA | 1 cut(s) | 40 |
| NlaIII | CATG | 2 cut(s) | 108, 120 |
| PagI | TCATGA | 1 cut(s) | 104 |
| PkrI | GCNGC | 3 cut(s) | 8, 68, 176 |
| PstI | CTGCAG | 1 cut(s) | 68 |
| RseI | CAYNNNNRTG | 1 cut(s) | 103 |
| SatI | GCNGC | 3 cut(s) | 7, 67, 175 |
| SetI | ASST | 5 cut(s) | 16, 25, 63, 130, 179 |
| SfaNI | GCATC | 1 cut(s) | 127 |
| SfcI | CTRYAG | 1 cut(s) | 64 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 103 |
| Sse9I | AATT | 2 cut(s) | 43, 142 |
| SsiI | CCGC | 1 cut(s) | 90 |
| StyI | CCWWGG | 1 cut(s) | 10 |
| TaqI | TCGA | 1 cut(s) | 135 |
| TasI | AATT | 2 cut(s) | 43, 142 |
| TseI | GCWGC | 3 cut(s) | 6, 66, 174 |
| XapI | RAATTY | 1 cut(s) | 43 |