Autophagy-related protein
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD12G1215700.v1.1 MD12G1215900.v1.1 |
| rosa_laevigata | RLG00000002437 |
| rosa_multiflora | Rmu_co8306773.1_g000001 Rmu_sc0010428.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00019200 Rroxscaffold_2G00089670 Rroxscaffold_4G00304100 |
| rosa_rugosa | Rorug05G0261900 |
| rosa_samantha | Rh1AG108000 Rh1CG104000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 211 |
| AcoI | YGGCCR | 1 cut(s) | 159 |
| AcsI | RAATTY | 1 cut(s) | 164 |
| AdeI | CACNNNGTG | 1 cut(s) | 103 |
| AfaI | GTAC | 1 cut(s) | 36 |
| AgsI | TTSAA | 1 cut(s) | 50 |
| AluBI | AGCT | 2 cut(s) | 83, 144 |
| AluI | AGCT | 2 cut(s) | 83, 144 |
| AoxI | GGCC | 1 cut(s) | 159 |
| ApeKI | GCWGC | 3 cut(s) | 124, 127, 187 |
| ApoI | RAATTY | 1 cut(s) | 164 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 221 |
| AsuHPI | GGTGA | 1 cut(s) | 58 |
| BaeGI | GKGCMC | 1 cut(s) | 9 |
| BalI | TGGCCA | 1 cut(s) | 161 |
| BbvI | GCAGC | 3 cut(s) | 111, 114, 199 |
| BccI | CCATC | 2 cut(s) | 70, 236 |
| BclI | TGATCA | 1 cut(s) | 228 |
| BfmI | CTRYAG | 1 cut(s) | 185 |
| BisI | GCNGC | 3 cut(s) | 125, 128, 188 |
| BlsI | GCNGC | 3 cut(s) | 126, 129, 189 |
| BsaJI | CCNNGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 1 cut(s) | 131 |
| BseGI | GGATG | 2 cut(s) | 81, 247 |
| BseRI | GAGGAG | 1 cut(s) | 30 |
| BseSI | GKGCMC | 1 cut(s) | 9 |
| BseXI | GCAGC | 3 cut(s) | 111, 114, 199 |
| BshFI | GGCC | 1 cut(s) | 161 |
| BsnI | GGCC | 1 cut(s) | 161 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| Bsp143I | GATC | 2 cut(s) | 89, 228 |
| BspACI | CCGC | 1 cut(s) | 211 |
| BspANI | GGCC | 1 cut(s) | 161 |
| BspHI | TCATGA | 1 cut(s) | 225 |
| BspMAI | CTGCAG | 1 cut(s) | 189 |
| BssECI | CCNNGG | 1 cut(s) | 131 |
| BssMI | GATC | 2 cut(s) | 89, 228 |
| BssT1I | CCWWGG | 1 cut(s) | 131 |
| BstC8I | GCNNGC | 1 cut(s) | 209 |
| BstDEI | CTNAG | 1 cut(s) | 10 |
| BstF5I | GGATG | 2 cut(s) | 81, 247 |
| BstKTI | GATC | 2 cut(s) | 92, 231 |
| BstMBI | GATC | 2 cut(s) | 89, 228 |
| BstSFI | CTRYAG | 1 cut(s) | 185 |
| BstSLI | GKGCMC | 1 cut(s) | 9 |
| BstV1I | GCAGC | 3 cut(s) | 111, 114, 199 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 76 |
| BsuRI | GGCC | 1 cut(s) | 161 |
| BtsCI | GGATG | 2 cut(s) | 81, 247 |
| BtsIMutI | CAGTG | 1 cut(s) | 162 |
| Cac8I | GCNNGC | 1 cut(s) | 209 |
| CciI | TCATGA | 1 cut(s) | 225 |
| Csp6I | GTAC | 1 cut(s) | 35 |
| CviAII | CATG | 3 cut(s) | 32, 226, 238 |
| CviJI | RGCY | 5 cut(s) | 59, 83, 107, 144, 161 |
| CviKI_1 | RGCY | 5 cut(s) | 59, 83, 107, 144, 161 |
| CviQI | GTAC | 1 cut(s) | 35 |
| DdeI | CTNAG | 1 cut(s) | 10 |
| DpnI | GATC | 2 cut(s) | 91, 230 |
| DpnII | GATC | 2 cut(s) | 89, 228 |
| DraIII | CACNNNGTG | 1 cut(s) | 103 |
| EaeI | YGGCCR | 1 cut(s) | 159 |
| Eco130I | CCWWGG | 1 cut(s) | 131 |
| EcoT14I | CCWWGG | 1 cut(s) | 131 |
| ErhI | CCWWGG | 1 cut(s) | 131 |
| FaeI | CATG | 3 cut(s) | 35, 229, 241 |
| FaiI | YATR | 4 cut(s) | 33, 192, 227, 239 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 206, 238 |
| FatI | CATG | 3 cut(s) | 31, 225, 237 |
| FbaI | TGATCA | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 3 cut(s) | 125, 128, 188 |
| FokI | GGATG | 1 cut(s) | 88 |
| Fsp4HI | GCNGC | 3 cut(s) | 125, 128, 188 |
| GluI | GCNGC | 3 cut(s) | 125, 128, 188 |
| HaeIII | GGCC | 1 cut(s) | 161 |
| Hin1II | CATG | 3 cut(s) | 35, 229, 241 |
| HinfI | GANTC | 1 cut(s) | 63 |
| HphI | GGTGA | 1 cut(s) | 58 |
| Hpy188III | TCNNGA | 1 cut(s) | 226 |
| HpyAV | CCTTC | 2 cut(s) | 173, 232 |
| HpyCH4V | TGCA | 2 cut(s) | 175, 187 |
| HpyF3I | CTNAG | 1 cut(s) | 10 |
| Hsp92II | CATG | 3 cut(s) | 35, 229, 241 |
| Ksp22I | TGATCA | 1 cut(s) | 228 |
| Kzo9I | GATC | 2 cut(s) | 89, 228 |
| LmnI | GCTCC | 1 cut(s) | 17 |
| LpnPI | CCDG | 2 cut(s) | 45, 99 |
| Lsp1109I | GCAGC | 3 cut(s) | 111, 114, 199 |
| MaeIII | GTNAC | 1 cut(s) | 109 |
| MalI | GATC | 2 cut(s) | 91, 230 |
| MboI | GATC | 2 cut(s) | 89, 228 |
| MboII | GAAGA | 1 cut(s) | 226 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MlsI | TGGCCA | 1 cut(s) | 161 |
| MluCI | AATT | 1 cut(s) | 164 |
| MluNI | TGGCCA | 1 cut(s) | 161 |
| MnlI | CCTC | 1 cut(s) | 8 |
| Mox20I | TGGCCA | 1 cut(s) | 161 |
| MroXI | GAANNNNTTC | 1 cut(s) | 221 |
| MscI | TGGCCA | 1 cut(s) | 161 |
| MslI | CAYNNNNRTG | 2 cut(s) | 74, 236 |
| Msp20I | TGGCCA | 1 cut(s) | 161 |
| NdeII | GATC | 2 cut(s) | 89, 228 |
| NlaIII | CATG | 3 cut(s) | 35, 229, 241 |
| PagI | TCATGA | 1 cut(s) | 225 |
| PdmI | GAANNNNTTC | 1 cut(s) | 221 |
| PfeI | GAWTC | 1 cut(s) | 63 |
| PkrI | GCNGC | 3 cut(s) | 126, 129, 189 |
| PstI | CTGCAG | 1 cut(s) | 189 |
| RsaI | GTAC | 1 cut(s) | 36 |
| RsaNI | GTAC | 1 cut(s) | 35 |
| RseI | CAYNNNNRTG | 2 cut(s) | 74, 236 |
| SatI | GCNGC | 3 cut(s) | 125, 128, 188 |
| Sau3AI | GATC | 2 cut(s) | 89, 228 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SetI | ASST | 6 cut(s) | 85, 118, 137, 146, 184, 224 |
| SfcI | CTRYAG | 1 cut(s) | 185 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 74, 236 |
| Sse9I | AATT | 1 cut(s) | 164 |
| SsiI | CCGC | 1 cut(s) | 211 |
| StyI | CCWWGG | 1 cut(s) | 131 |
| TasI | AATT | 1 cut(s) | 164 |
| TfiI | GAWTC | 1 cut(s) | 63 |
| TscAI | CASTG | 1 cut(s) | 162 |
| TseI | GCWGC | 3 cut(s) | 124, 127, 187 |
| TspDTI | ATGAA | 2 cut(s) | 20, 214 |
| TspRI | CASTG | 1 cut(s) | 162 |
| XapI | RAATTY | 1 cut(s) | 164 |
| XmnI | GAANNNNTTC | 1 cut(s) | 221 |