Rroxscaffold_4G00304100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0018111
Physical Location & Seq
Forward (+)
24765400 .. 24771683
6284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00304100.1

Sequence Viewer

Length: 828 bp
ATGGAGCCGCGTCGCCGTCGATCGTCTCGGTCGAAAGCCTCTGCAGCCGAGTTTCTTGTTCGGAACTCCGGCAAAACGACGTCGGGGACCTCGAAGCGCTTGCGGGCCGATCGAGCTCGTCGATCCCGAGGCGCAAGATCCCTTCTTGGAGGAGCAAAAGCAGTTCATGTACCAACAAAAGTTGAATACTTGGCTGGAATCACCATTAGGATGGTAGCTTTGAGATCAGAGCACTTGGTGGCTGTTATTGGTACAATTTTGCTTTACTTGAATACCTCCTGTCGTTGGTATCATATTCATTTTAGTGAAGACAACTTTGGGTGTGTTGCCAAGGTATTTCAGCTCAGAATGGTCAGTGGCCAAATTTCACTTGCAGGAAGTCCCCTAGCACCTCCGATTCTCTCTCTCTGTTTCCCTTCGGACCCGGCGGGTTTCCGCCGACCCGACCCGGCTGTTTCTTTCTCCTCCGGCGTCCTCCTGGTCCACGACCCGGCCCTCCCCGTGATCGCCGCTCCATGCCCAGCCGCTCTCGGGTGTCTTCTTGGCCCGCCGCTGCCCCTAGACCCGGATCGAAGGAGCCCGGACAAGAGGAATCGGACCGGCGGAATCGGACCGGCGTTGCATGGGCCGATCCTCCCCATTTTCGTGATCTCCTCCTCCCCCCCGATCATCCTCATATACTCCTTGCATGGCGATTTTGAGTGTGGAGTGAAAGATCACGAGTTGAAGATTTCGACGTCCCCGATTCAATGCGGAATCGATCGGACACACGAGATTAATTCAACTTTAAAGCTTGATCTAGGACAATCTAGGCCGAATCGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

29.68

Weight (kDa)

10.14

Isoelectric Point (pI)

68.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 83, 740
AccBSI CCGCTC 2 cut(s) 512, 527
AccII CGCG 1 cut(s) 10
AclWI GGATC 4 cut(s) 117, 132, 576, 625
AcoI YGGCCR 1 cut(s) 358
AcsI RAATTY 1 cut(s) 363
AcyI GRCGYC 3 cut(s) 80, 471, 737
AdeI CACNNNGTG 1 cut(s) 238
AfaI GTAC 2 cut(s) 171, 253
AfeI AGCGCT 1 cut(s) 98
AfiI CCNNNNNNNGG 4 cut(s) 285, 490, 531, 565
AgsI TTSAA 5 cut(s) 185, 271, 727, 749, 783
AjnI CCWGG 1 cut(s) 477
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
AluBI AGCT 4 cut(s) 116, 218, 343, 793
AluI AGCT 4 cut(s) 116, 218, 343, 793
Alw21I GWGCWC 2 cut(s) 118, 234
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 4 cut(s) 117, 132, 576, 625
Ama87I CYCGRG 2 cut(s) 126, 530
Aor51HI AGCGCT 1 cut(s) 98
AoxI GGCC 6 cut(s) 105, 358, 492, 544, 626, 812
ApeKI GCWGC 2 cut(s) 44, 553
ApoI RAATTY 1 cut(s) 363
AseI ATTAAT 1 cut(s) 777
AspLEI GCGC 2 cut(s) 99, 134
AspS9I GGNCC 9 cut(s) 87, 105, 421, 481, 493, 545, 597, 611, 626
AsuC2I CCSGG 5 cut(s) 425, 449, 491, 566, 581
AsuHPI GGTGA 1 cut(s) 193
AvaI CYCGRG 2 cut(s) 126, 530
AvaII GGWCC 5 cut(s) 87, 421, 481, 597, 611
BalI TGGCCA 1 cut(s) 360
BanII GRGCYC 2 cut(s) 118, 581
BauI CACGAG 2 cut(s) 719, 770
BbsI GAAGAC 2 cut(s) 315, 530
Bbv12I GWGCWC 2 cut(s) 118, 234
BbvI GCAGC 2 cut(s) 56, 540
BccI CCATC 1 cut(s) 205
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 1 cut(s) 479
BcnI CCSGG 5 cut(s) 425, 449, 491, 566, 581
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 4 cut(s) 386, 560, 800, 810
BfmI CTRYAG 1 cut(s) 42
BfoI RGCGCY 1 cut(s) 100
BisI GCNGC 6 cut(s) 8, 45, 510, 525, 551, 554
BlsI GCNGC 6 cut(s) 9, 46, 511, 526, 552, 555
Bme1390I CCNGG 6 cut(s) 425, 449, 479, 491, 566, 581
Bme18I GGWCC 5 cut(s) 87, 421, 481, 597, 611
BmeT110I CYCGRG 2 cut(s) 126, 530
BmgT120I GGNCC 9 cut(s) 87, 105, 421, 481, 493, 545, 597, 611, 626
BmiI GGNNCC 4 cut(s) 6, 88, 423, 578
BmrFI CCNGG 6 cut(s) 425, 449, 479, 491, 566, 581
BpiI GAAGAC 2 cut(s) 315, 530
BpuMI CCSGG 5 cut(s) 425, 449, 491, 566, 581
Bsa29I ATCGAT 1 cut(s) 759
BsaHI GRCGYC 3 cut(s) 80, 471, 737
BsaJI CCNNGG 2 cut(s) 127, 330
Bsc4I CCNNNNNNNGG 4 cut(s) 285, 490, 531, 565
Bse118I RCCGGY 2 cut(s) 599, 613
BseBI CCWGG 1 cut(s) 479
BseCI ATCGAT 1 cut(s) 759
BseDI CCNNGG 2 cut(s) 127, 330
BseGI GGATG 2 cut(s) 216, 669
BseLI CCNNNNNNNGG 4 cut(s) 285, 490, 531, 565
BseMII CTCAG 1 cut(s) 358
BseRI GAGGAG 4 cut(s) 165, 454, 643, 646
BseXI GCAGC 2 cut(s) 56, 540
BseYI CCCAGC 1 cut(s) 520
Bsh1236I CGCG 1 cut(s) 10
Bsh1285I CGRYCG 4 cut(s) 23, 32, 112, 763
BshFI GGCC 6 cut(s) 107, 360, 494, 546, 628, 814
BshVI ATCGAT 1 cut(s) 759
BsiEI CGRYCG 4 cut(s) 23, 32, 112, 763
BsiHKAI GWGCWC 2 cut(s) 118, 234
BsiHKCI CYCGRG 2 cut(s) 126, 530
BsiSI CCGG 9 cut(s) 69, 425, 449, 468, 491, 566, 581, 600, 614
BslFI GGGAC 3 cut(s) 100, 366, 724
BslI CCNNNNNNNGG 4 cut(s) 285, 490, 531, 565
BsmAI GTCTC 1 cut(s) 30
BsmBI CGTCTC 1 cut(s) 30
BsmFI GGGAC 3 cut(s) 100, 366, 724
BsnI GGCC 6 cut(s) 107, 360, 494, 546, 628, 814
BsoBI CYCGRG 2 cut(s) 126, 530
Bsp1286I GDGCHC 3 cut(s) 118, 234, 581
BspANI GGCC 6 cut(s) 107, 360, 494, 546, 628, 814
BspCNI CTCAG 1 cut(s) 357
BspDI ATCGAT 1 cut(s) 759
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 4 cut(s) 6, 88, 423, 578
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 4 cut(s) 117, 132, 576, 625
BsrBI CCGCTC 2 cut(s) 512, 527
BsrFI RCCGGY 2 cut(s) 599, 613
BssAI RCCGGY 2 cut(s) 599, 613
BssECI CCNNGG 2 cut(s) 127, 330
BssNI GRCGYC 3 cut(s) 80, 471, 737
BssSI CACGAG 2 cut(s) 719, 770
BssT1I CCWWGG 1 cut(s) 330
Bst2BI CACGAG 2 cut(s) 719, 770
Bst2UI CCWGG 1 cut(s) 479
BstACI GRCGYC 3 cut(s) 80, 471, 737
BstC8I GCNNGC 3 cut(s) 101, 105, 548
BstDEI CTNAG 2 cut(s) 344, 825
BstF5I GGATG 2 cut(s) 216, 669
BstFNI CGCG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 2 cut(s) 99, 134
BstMAI GTCTC 1 cut(s) 30
BstMCI CGRYCG 4 cut(s) 23, 32, 112, 763
BstMWI GCNNNNNNNGC 2 cut(s) 44, 113
BstNI CCWGG 1 cut(s) 479
BstSCI CCNGG 6 cut(s) 423, 447, 477, 489, 564, 579
BstSFI CTRYAG 1 cut(s) 42
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 56, 540
BstV2I GAAGAC 2 cut(s) 315, 530
BstX2I RGATCY 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 211
BstYI RGATCY 1 cut(s) 137
Bsu15I ATCGAT 1 cut(s) 759
BsuRI GGCC 6 cut(s) 107, 360, 494, 546, 628, 814
BsuTUI ATCGAT 1 cut(s) 759
BtsCI GGATG 2 cut(s) 216, 669
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 3 cut(s) 101, 105, 548
CfoI GCGC 2 cut(s) 99, 134
Cfr10I RCCGGY 2 cut(s) 599, 613
Cfr13I GGNCC 9 cut(s) 87, 105, 421, 481, 493, 545, 597, 611, 626
ClaI ATCGAT 1 cut(s) 759
CpoI CGGWCCG 2 cut(s) 597, 611
CseI GACGC 1 cut(s) 460
Csp6I GTAC 2 cut(s) 170, 252
CspI CGGWCCG 2 cut(s) 597, 611
CviAII CATG 4 cut(s) 167, 516, 623, 689
CviQI GTAC 2 cut(s) 170, 252
DdeI CTNAG 2 cut(s) 344, 825
DraI TTTAAA 1 cut(s) 789
DraIII CACNNNGTG 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 358
EciI GGCGGA 2 cut(s) 425, 618
Ecl136II GAGCTC 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 2 cut(s) 118, 581
Eco47I GGWCC 5 cut(s) 87, 421, 481, 597, 611
Eco47III AGCGCT 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 116
Eco88I CYCGRG 2 cut(s) 126, 530
EcoICRI GAGCTC 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 330
EcoT38I GRGCYC 2 cut(s) 118, 581
ErhI CCWWGG 1 cut(s) 330
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 4 cut(s) 170, 519, 626, 692
FaiI YATR 7 cut(s) 168, 294, 517, 624, 677, 679, 690
FaqI GGGAC 3 cut(s) 100, 366, 724
FatI CATG 4 cut(s) 166, 515, 622, 688
FauI CCCGC 3 cut(s) 96, 421, 555
Fnu4HI GCNGC 6 cut(s) 8, 45, 510, 525, 551, 554
FokI GGATG 2 cut(s) 223, 656
FriOI GRGCYC 2 cut(s) 118, 581
Fsp4HI GCNGC 6 cut(s) 8, 45, 510, 525, 551, 554
FspBI CTAG 4 cut(s) 386, 560, 800, 810
GlaI GCGC 2 cut(s) 98, 133
GluI GCNGC 6 cut(s) 8, 45, 510, 525, 551, 554
GsaI CCCAGC 1 cut(s) 524
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 6 cut(s) 107, 360, 494, 546, 628, 814
HapII CCGG 9 cut(s) 69, 425, 449, 468, 491, 566, 581, 600, 614
HgaI GACGC 1 cut(s) 460
HhaI GCGC 2 cut(s) 99, 134
Hin1I GRCGYC 3 cut(s) 80, 471, 737
Hin1II CATG 4 cut(s) 170, 519, 626, 692
Hin6I GCGC 2 cut(s) 97, 132
HinP1I GCGC 2 cut(s) 97, 132
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 7 cut(s) 198, 397, 592, 606, 745, 756, 817
HpaII CCGG 9 cut(s) 69, 425, 449, 468, 491, 566, 581, 600, 614
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 8 cut(s) 63, 229, 347, 396, 421, 597, 611, 765
Hpy188III TCNNGA 3 cut(s) 126, 646, 719
Hpy8I GTNNAC 1 cut(s) 484
Hpy99I CGWCG 6 cut(s) 15, 21, 82, 85, 123, 739
HpyAV CCTTC 3 cut(s) 152, 426, 567
HpyCH4IV ACGT 2 cut(s) 80, 737
HpyCH4V TGCA 4 cut(s) 44, 374, 622, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 113
HpyF3I CTNAG 2 cut(s) 344, 825
HpySE526I ACGT 2 cut(s) 80, 737
Hsp92I GRCGYC 3 cut(s) 80, 471, 737
Hsp92II CATG 4 cut(s) 170, 519, 626, 692
HspAI GCGC 2 cut(s) 97, 132
LmnI GCTCC 4 cut(s) 4, 152, 517, 576
Lsp1109I GCAGC 2 cut(s) 56, 540
MaeI CTAG 4 cut(s) 386, 560, 800, 810
MaeII ACGT 2 cut(s) 80, 737
MbiI CCGCTC 2 cut(s) 512, 527
MboII GAAGA 3 cut(s) 320, 530, 739
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 3 cut(s) 118, 234, 581
MlsI TGGCCA 1 cut(s) 360
MluCI AATT 3 cut(s) 255, 363, 778
MluNI TGGCCA 1 cut(s) 360
Mox20I TGGCCA 1 cut(s) 360
MscI TGGCCA 1 cut(s) 360
MseI TTAA 2 cut(s) 777, 788
MslI CAYNNNNRTG 3 cut(s) 209, 303, 644
Msp20I TGGCCA 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 553
MspI CCGG 9 cut(s) 69, 425, 449, 468, 491, 566, 581, 600, 614
MspR9I CCNGG 6 cut(s) 425, 449, 479, 491, 566, 581
MvaI CCWGG 1 cut(s) 479
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 44, 113
NciI CCSGG 5 cut(s) 425, 449, 491, 566, 581
NlaIII CATG 4 cut(s) 170, 519, 626, 692
NlaIV GGNNCC 4 cut(s) 6, 88, 423, 578
NmeAIII GCCGAG 1 cut(s) 73
PcsI WCGNNNNNNNCGW 5 cut(s) 29, 89, 118, 124, 740
PfeI GAWTC 7 cut(s) 198, 397, 592, 606, 745, 756, 817
PkrI GCNGC 6 cut(s) 9, 46, 511, 526, 552, 555
Ple19I CGATCG 3 cut(s) 23, 112, 763
PpuMI RGGWCCY 1 cut(s) 87
PshBI ATTAAT 1 cut(s) 777
Psp124BI GAGCTC 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 477
PspFI CCCAGC 1 cut(s) 520
PspGI CCWGG 1 cut(s) 477
PspN4I GGNNCC 4 cut(s) 6, 88, 423, 578
PspPI GGNCC 9 cut(s) 87, 105, 421, 481, 493, 545, 597, 611, 626
PspPPI RGGWCCY 1 cut(s) 87
PstI CTGCAG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 137
PvuI CGATCG 3 cut(s) 23, 112, 763
RsaI GTAC 2 cut(s) 171, 253
RsaNI GTAC 2 cut(s) 170, 252
RseI CAYNNNNRTG 3 cut(s) 209, 303, 644
Rsr2I CGGWCCG 2 cut(s) 597, 611
RsrII CGGWCCG 2 cut(s) 597, 611
SacI GAGCTC 1 cut(s) 118
SaqAI TTAA 2 cut(s) 777, 788
SatI GCNGC 6 cut(s) 8, 45, 510, 525, 551, 554
Sau96I GGNCC 9 cut(s) 87, 105, 421, 481, 493, 545, 597, 611, 626
ScrFI CCNGG 6 cut(s) 425, 449, 479, 491, 566, 581
SduI GDGCHC 3 cut(s) 118, 234, 581
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 5 cut(s) 87, 421, 481, 597, 611
SmiMI CAYNNNNRTG 3 cut(s) 209, 303, 644
Sse9I AATT 3 cut(s) 255, 363, 778
SspMI CTAG 4 cut(s) 386, 560, 800, 810
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 6 cut(s) 423, 447, 477, 489, 564, 579
StyI CCWWGG 1 cut(s) 330
TaiI ACGT 2 cut(s) 83, 740
TaqI TCGA 8 cut(s) 19, 32, 92, 112, 121, 571, 734, 759
TaqII GACCGA 1 cut(s) 18
TasI AATT 3 cut(s) 255, 363, 778
TauI GCSGC 4 cut(s) 10, 512, 527, 553
TfiI GAWTC 7 cut(s) 198, 397, 592, 606, 745, 756, 817
Tru1I TTAA 2 cut(s) 777, 788
Tru9I TTAA 2 cut(s) 777, 788
TscAI CASTG 1 cut(s) 361
TseI GCWGC 2 cut(s) 44, 553
TspDTI ATGAA 2 cut(s) 155, 287
TspRI CASTG 1 cut(s) 361
VpaK11BI GGWCC 5 cut(s) 87, 421, 481, 597, 611
VspI ATTAAT 1 cut(s) 777
XapI RAATTY 1 cut(s) 363
XspI CTAG 4 cut(s) 386, 560, 800, 810
ZraI GACGTC 2 cut(s) 81, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.