Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0018111

Physical Location & Seq

Genomic Coordinates Reverse (-)

29394160 .. 29395676

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1215900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCTTTGGATGGTTCATTACTACAAGAGGAGAGGAGCCGAGAGAGCGGAGATTTTCAGCCTTGCTTTCTCCTCTGGTGCACAATGGCTAGCTGCGTCAAGTGACAAGGGCACCGTCCATGTTTTCAGCGTTAAGGTTGATTCGGGATCCTTGGGGGGTGAGAGATCAAGCAGTTCATCAGAATCCAGTCACCCGAGTCCGTTGGGCATTTCATCTCTCTCTTTCATGAAAGGTTTATCTTTCTCCGGTGTGCTGCCAAAGTATTTCAGCTCAGAGTGGTCAGTAGCTAAATATCACTTGCCGGAAGGTCTGCGGTACACCGTTGCCTTTGGCCACCAGAAGGAACACGGTGGTGATCCTTGGCATGGACGGAAGTTATCGGATTACCAATACAGCTTCTACCGATGCCAGTTTGACCCCGTAAACGGAGGAGGGATGACTCAGATTGAATACCATAACTTTCTTAAGCCCGAAGAAACCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

162

Amino Acids

17.97

Weight (kDa)

7.89

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018111)

Species	Orthologous Gene IDs
malus_domestica	MD12G1215700.v1.1 MD12G1215900.v1.1
rosa_laevigata	RLG00000002437
rosa_multiflora	Rmu_co8306773.1_g000001 Rmu_sc0010428.1_g000008
rosa_roxburghii	Rroxscaffold_1G00019200 Rroxscaffold_2G00089670 Rroxscaffold_4G00304100
rosa_rugosa	Rorug05G0261900
rosa_samantha	Rh1AG108000 Rh1CG104000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AccBSI	CCGCTC	1 cut(s)	47
AciI	CCGC	2 cut(s)	47, 313
AclWI	GGATC	3 cut(s)	141, 154, 350
AcoI	YGGCCR	1 cut(s)	331
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	3 cut(s)	340, 365, 425
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	1 cut(s)	449
AleI	CACNNNNGTG	1 cut(s)	351
AluBI	AGCT	4 cut(s)	92, 270, 287, 396
AluI	AGCT	4 cut(s)	92, 270, 287, 396
Alw21I	GWGCWC	1 cut(s)	82
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	3 cut(s)	141, 154, 350
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	1 cut(s)	331
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	92, 253
AsuHPI	GGTGA	3 cut(s)	170, 182, 365
AsuNHI	GCTAGC	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	193
BaeGI	GKGCMC	2 cut(s)	82, 113
BalI	TGGCCA	1 cut(s)	333
BamHI	GGATCC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	79, 240
BccI	CCATC	1 cut(s)	4
BfaI	CTAG	1 cut(s)	89
BfrI	CTTAAG	1 cut(s)	464
BisI	GCNGC	2 cut(s)	93, 254
BlsI	GCNGC	2 cut(s)	94, 255
BmeT110I	CYCGRG	1 cut(s)	193
BmiI	GGNNCC	3 cut(s)	37, 112, 148
BmsI	GCATC	1 cut(s)	395
BmtI	GCTAGC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	150, 359
BsaWI	WCCGGW	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	3 cut(s)	340, 365, 425
Bse1I	ACTGG	2 cut(s)	186, 409
BseDI	CCNNGG	2 cut(s)	150, 359
BseGI	GGATG	2 cut(s)	15, 441
BseLI	CCNNNNNNNGG	3 cut(s)	340, 365, 425
BseMII	CTCAG	2 cut(s)	285, 455
BseNI	ACTGG	2 cut(s)	186, 409
BseRI	GAGGAG	4 cut(s)	43, 48, 61, 444
BseSI	GKGCMC	2 cut(s)	82, 113
BseXI	GCAGC	2 cut(s)	79, 240
BshFI	GGCC	1 cut(s)	333
BshNI	GGYRCC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	2 cut(s)	246, 302
BslI	CCNNNNNNNGG	3 cut(s)	340, 365, 425
BsnI	GGCC	1 cut(s)	333
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	2 cut(s)	82, 113
Bsp143I	GATC	3 cut(s)	146, 164, 355
BspACI	CCGC	2 cut(s)	47, 313
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	2 cut(s)	284, 454
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	3 cut(s)	37, 112, 148
BspOI	GCTAGC	1 cut(s)	92
BspPI	GGATC	3 cut(s)	141, 154, 350
BspT107I	GGYRCC	1 cut(s)	110
BspTI	CTTAAG	1 cut(s)	464
BsrBI	CCGCTC	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	186, 409
BssECI	CCNNGG	2 cut(s)	150, 359
BssMI	GATC	3 cut(s)	146, 164, 355
BssT1I	CCWWGG	2 cut(s)	150, 359
Bst4CI	ACNGT	3 cut(s)	115, 322, 350
BstAFI	CTTAAG	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	271, 441
BstF5I	GGATG	2 cut(s)	15, 441
BstKTI	GATC	3 cut(s)	149, 167, 358
BstMBI	GATC	3 cut(s)	146, 164, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstSLI	GKGCMC	2 cut(s)	82, 113
BstV1I	GCAGC	2 cut(s)	79, 240
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	15, 441
Cac8I	GCNNGC	1 cut(s)	90
CciI	TCATGA	1 cut(s)	225
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	3 cut(s)	119, 226, 365
CviJI	RGCY	9 cut(s)	38, 60, 88, 92, 270, 287, 333, 396, 469
CviKI_1	RGCY	9 cut(s)	38, 60, 88, 92, 270, 287, 333, 396, 469
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	271, 441
DpnI	GATC	3 cut(s)	148, 166, 357
DpnII	GATC	3 cut(s)	146, 164, 355
EaeI	YGGCCR	1 cut(s)	331
Eco130I	CCWWGG	2 cut(s)	150, 359
Eco88I	CYCGRG	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	150, 359
ErhI	CCWWGG	2 cut(s)	150, 359
FaeI	CATG	3 cut(s)	122, 229, 368
FaiI	YATR	4 cut(s)	120, 227, 366, 456
FatI	CATG	3 cut(s)	118, 225, 364
Fnu4HI	GCNGC	2 cut(s)	93, 254
FokI	GGATG	2 cut(s)	22, 448
Fsp4HI	GCNGC	2 cut(s)	93, 254
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	2 cut(s)	93, 254
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	2 cut(s)	246, 302
HgaI	GACGC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	122, 229, 368
HinfI	GANTC	4 cut(s)	140, 182, 196, 439
HpaII	CCGG	2 cut(s)	246, 302
HphI	GGTGA	3 cut(s)	170, 182, 365
Hpy166II	GTNNAC	3 cut(s)	80, 318, 424
Hpy188I	TCNGA	4 cut(s)	181, 274, 382, 444
Hpy188III	TCNNGA	3 cut(s)	144, 226, 483
Hpy8I	GTNNAC	3 cut(s)	80, 318, 424
HpyAV	CCTTC	2 cut(s)	299, 334
HpyCH4III	ACNGT	3 cut(s)	115, 322, 350
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	2 cut(s)	271, 441
Hsp92II	CATG	3 cut(s)	122, 229, 368
Kzo9I	GATC	3 cut(s)	146, 164, 355
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	6 cut(s)	60, 199, 259, 315, 350, 422
Lsp1109I	GCAGC	2 cut(s)	79, 240
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	2 cut(s)	101, 188
MalI	GATC	3 cut(s)	148, 166, 357
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	3 cut(s)	146, 164, 355
MboII	GAAGA	1 cut(s)	485
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	2 cut(s)	82, 113
MlsI	TGGCCA	1 cut(s)	333
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	2 cut(s)	205, 433
MnlI	CCTC	5 cut(s)	21, 26, 82, 422, 425
Mox20I	TGGCCA	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	2 cut(s)	132, 465
MslI	CAYNNNNRTG	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	333
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	2 cut(s)	246, 302
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	3 cut(s)	146, 164, 355
NheI	GCTAGC	1 cut(s)	88
NlaIII	CATG	3 cut(s)	122, 229, 368
NlaIV	GGNNCC	3 cut(s)	37, 112, 148
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	2 cut(s)	101, 188
OliI	CACNNNNGTG	1 cut(s)	351
PagI	TCATGA	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	140, 182
PkrI	GCNGC	2 cut(s)	94, 255
PleI	GAGTC	2 cut(s)	204, 433
PpsI	GAGTC	2 cut(s)	204, 433
PspN4I	GGNNCC	3 cut(s)	37, 112, 148
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	132, 465
SatI	GCNGC	2 cut(s)	93, 254
Sau3AI	GATC	3 cut(s)	146, 164, 355
SchI	GAGTC	2 cut(s)	205, 433
SduI	GDGCHC	2 cut(s)	82, 113
SetI	ASST	8 cut(s)	94, 138, 235, 272, 289, 310, 398, 482
SfaNI	GCATC	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SsiI	CCGC	2 cut(s)	47, 313
SspMI	CTAG	1 cut(s)	89
StyI	CCWWGG	2 cut(s)	150, 359
TaaI	ACNGT	3 cut(s)	115, 322, 350
TfiI	GAWTC	2 cut(s)	140, 182
Tru1I	TTAA	2 cut(s)	132, 465
Tru9I	TTAA	2 cut(s)	132, 465
TseFI	GTSAC	2 cut(s)	101, 188
TseI	GCWGC	2 cut(s)	92, 253
Tsp45I	GTSAC	2 cut(s)	101, 188
TspDTI	ATGAA	5 cut(s)	5, 165, 201, 214, 242
TspGWI	ACGGA	3 cut(s)	189, 385, 441
Vha464I	CTTAAG	1 cut(s)	464
VneI	GTGCAC	1 cut(s)	78
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.