Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018111

Physical Location & Seq

Genomic Coordinates Forward (+)

23425003 .. 23438114

Gene Structure 13112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTCTAGCATAGTAGAAGATGCGCAGCTTAGAAGGGTTGAAGAGGAGATTGTAAAACAATCAAGGCAAGAGGAAGAGCATGAGAAAGGAGAGAAATTGAACCTGCACAAAAGATGGAAGGAGACATGTAGAAGAGTAGAAGAACGAGATTTGGCTTCCACGGACAGTTTTGCCATCTCCTTCTTTGTCACTTGGAGAGAGAAGTCATCGGAGATCTTGCCGGACTCTAGTAACGGGAATCCGGCAACTAGTGACCGAAATCCGGCCATCGGACGGTGGCGGGATTCCGGGACGGCTAAGTACGTCTTCCCCAAGCGAGTTCGAGGCTCGGACTCTCGAGGAAGCTCTCATGTCGGAGGAGCAAAAGCAGTTCATGTACCAACAAAAGTTGAATGCTTGGCTGGAATCACCATTAGGATGGTAGCTTTGGGATCGAGCACTCGGTGGCTGAAAAATGGTATTGAGGTCAAATTAATAGATGAAGGAAATATGAAGGTTAATGTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

RCC1

Protein Analysis

169

Amino Acids

18.98

Weight (kDa)

9.17

Isoelectric Point (pI)

70.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018111)

Species	Orthologous Gene IDs
malus_domestica	MD12G1215700.v1.1 MD12G1215900.v1.1
rosa_laevigata	RLG00000002437
rosa_multiflora	Rmu_co8306773.1_g000001 Rmu_sc0010428.1_g000008
rosa_roxburghii	Rroxscaffold_1G00019200 Rroxscaffold_2G00089670 Rroxscaffold_4G00304100
rosa_rugosa	Rorug05G0261900
rosa_samantha	Rh1AG108000 Rh1CG104000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
Acc36I	ACCTGC	1 cut(s)	111
AciI	CCGC	1 cut(s)	280
AclWI	GGATC	1 cut(s)	439
AcoI	YGGCCR	1 cut(s)	264
AdeI	CACNNNGTG	1 cut(s)	444
AfaI	GTAC	2 cut(s)	302, 378
AfiI	CCNNNNNNNGG	3 cut(s)	262, 269, 273
AflIII	ACRYGT	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	41, 100, 392
AhlI	ACTAGT	1 cut(s)	248
AluBI	AGCT	3 cut(s)	28, 345, 425
AluI	AGCT	3 cut(s)	28, 345, 425
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	439
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	25
AseI	ATTAAT	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	4 cut(s)	108, 182, 275, 412
BceAI	ACGGC	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	116
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	3 cut(s)	6, 228, 249
BfuAI	ACCTGC	1 cut(s)	111
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	10
BpiI	GAAGAC	1 cut(s)	298
BpuMI	CCSGG	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 269, 273
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	262, 269, 273
BseRI	GAGGAG	2 cut(s)	59, 372
BseXI	GCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	440
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	4 cut(s)	221, 242, 263, 288
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	3 cut(s)	262, 269, 273
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	304
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	2 cut(s)	213, 431
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	1 cut(s)	266
BspMI	ACCTGC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	439
BspQI	GCTCTTC	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	213, 431
Bst4CI	ACNGT	2 cut(s)	167, 276
Bst6I	CTCTTC	3 cut(s)	36, 69, 127
BstDEI	CTNAG	2 cut(s)	29, 297
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	2 cut(s)	216, 434
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	2 cut(s)	213, 431
BstNSI	RCATGY	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	423
BveI	ACCTGC	1 cut(s)	111
CfoI	GCGC	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	301, 377
CviAII	CATG	4 cut(s)	80, 126, 350, 374
CviJI	RGCY	9 cut(s)	28, 155, 266, 296, 327, 345, 401, 425, 448
CviKI_1	RGCY	9 cut(s)	28, 155, 266, 296, 327, 345, 401, 425, 448
CviQI	GTAC	2 cut(s)	301, 377
DdeI	CTNAG	2 cut(s)	29, 297
DpnI	GATC	2 cut(s)	215, 433
DpnII	GATC	2 cut(s)	213, 431
DraIII	CACNNNGTG	1 cut(s)	444
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	3 cut(s)	36, 69, 127
EarI	CTCTTC	3 cut(s)	36, 69, 127
Eco88I	CYCGRG	1 cut(s)	336
FaeI	CATG	4 cut(s)	83, 129, 353, 377
FaiI	YATR	7 cut(s)	11, 81, 127, 351, 375, 491, 508
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	4 cut(s)	79, 125, 349, 373
FauI	CCCGC	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	1 cut(s)	430
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	3 cut(s)	6, 228, 249
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	4 cut(s)	221, 242, 263, 288
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	4 cut(s)	83, 129, 353, 377
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	5 cut(s)	224, 238, 284, 332, 405
HpaII	CCGG	4 cut(s)	221, 242, 263, 288
HphI	GGTGA	1 cut(s)	400
Hpy188I	TCNGA	4 cut(s)	211, 272, 331, 356
Hpy188III	TCNNGA	1 cut(s)	336
HpyAV	CCTTC	5 cut(s)	27, 112, 190, 476, 487
HpyCH4III	ACNGT	2 cut(s)	167, 276
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	2 cut(s)	106, 506
HpyF3I	CTNAG	2 cut(s)	29, 297
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	4 cut(s)	83, 129, 353, 377
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	213, 431
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	6 cut(s)	116, 234, 255, 276, 301, 387
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	3 cut(s)	6, 228, 249
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	3 cut(s)	187, 230, 251
MalI	GATC	2 cut(s)	215, 433
MboI	GATC	2 cut(s)	213, 431
MboII	GAAGA	6 cut(s)	29, 53, 86, 144, 152, 298
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	2 cut(s)	95, 470
MlyI	GAGTC	2 cut(s)	218, 326
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	6 cut(s)	37, 64, 317, 332, 350, 457
MseI	TTAA	2 cut(s)	473, 498
MslI	CAYNNNNRTG	1 cut(s)	416
MspI	CCGG	4 cut(s)	221, 242, 263, 288
MspR9I	CCNGG	1 cut(s)	289
Mva1269I	GAATGC	1 cut(s)	398
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	213, 431
NlaIII	CATG	4 cut(s)	83, 129, 353, 377
NmuCI	GTSAC	2 cut(s)	187, 251
NsbI	TGCGCA	1 cut(s)	24
NspI	RCATGY	1 cut(s)	129
PaeR7I	CTCGAG	1 cut(s)	336
PciI	ACATGT	1 cut(s)	125
PciSI	GCTCTTC	1 cut(s)	69
PctI	GAATGC	1 cut(s)	398
PfeI	GAWTC	3 cut(s)	238, 284, 405
PfoI	TCCNGGA	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	2 cut(s)	218, 326
PpsI	GAGTC	2 cut(s)	218, 326
PscI	ACATGT	1 cut(s)	125
PshBI	ATTAAT	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	213
RsaI	GTAC	2 cut(s)	302, 378
RsaNI	GTAC	2 cut(s)	301, 377
RseI	CAYNNNNRTG	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	473, 498
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	2 cut(s)	213, 431
SchI	GAGTC	2 cut(s)	218, 326
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	440
SetI	ASST	7 cut(s)	30, 105, 306, 347, 427, 468, 498
SfaNI	GCATC	1 cut(s)	10
Sfr274I	CTCGAG	1 cut(s)	336
SlaI	CTCGAG	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
SpeI	ACTAGT	1 cut(s)	248
Sse9I	AATT	2 cut(s)	95, 470
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	3 cut(s)	6, 228, 249
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	2 cut(s)	167, 276
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	3 cut(s)	322, 337, 434
TaqII	GACCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	95, 470
TfiI	GAWTC	3 cut(s)	238, 284, 405
Tru1I	TTAA	2 cut(s)	473, 498
Tru9I	TTAA	2 cut(s)	473, 498
TseFI	GTSAC	2 cut(s)	187, 251
TseI	GCWGC	1 cut(s)	25
Tsp45I	GTSAC	2 cut(s)	187, 251
TspDTI	ATGAA	3 cut(s)	362, 495, 506
TspGWI	ACGGA	1 cut(s)	176
VspI	ATTAAT	1 cut(s)	473
XceI	RCATGY	1 cut(s)	129
XhoI	CTCGAG	1 cut(s)	336
XspI	CTAG	3 cut(s)	6, 228, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.