MD12G1223700.v1.1

branched-chain-amino-acid aminotransferase-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
30021126 .. 30025775
4650 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1223700.v1.1.491

Sequence Viewer

Length: 1380 bp
ATGGAAGAGCTCAAGAACCAAGCAGAAGCTGAAGTGGAAGCGATTCACTTATGGGCTACTCCAAGATCACTGTCTACCAGCCTCATGTACTCCTTTGCTCATGTGCCCTCCAGTCTCTTCAATATTATTTTTTGGCTTCTGAAAGGCCTCGTTTGGGACTGCTTCTATTCCTTTGCTCATGTATTCCTTGTGCTCAGGGATGACACAGAAGTGCTTGATGAACCACTGTATGCAACTTTCCTGCAAGTGACAGGTTCTGATAGGCCCTACAGGGAGGAGGTTCTTTCCAAAATGGAACCTGATGGAAATAAAGTTGTAAGAGATATCATCTACCGTCCAGGAAGAAAGAAGTATCGCCTCTGTAAGCATATCGCAAAGCAACGTGTGCCTGAATTACCTAGTGATTTTATGAAGGAAGGAAAACACTTCCTTCTGATCCGGAATCCACTTGACATTTTGGCATCCTTTGACAAGGTTGTTCCTCCGTCCCTGGCTGAATTAGGTTTGGCAGAAATGGTCACCATATATAGTGAGCCCTCCCAACTGGGGCAGCCCCCTCCCATCGTTGATGCAGCAGAACTTCAACTAGATCCTGAGGCTACATTAAGCGGTCTTTGTGAAGACTTGGATATTCCTTTTCAGCCCACAATGCCCAATTTAGCCTTTTTGTTCATGAAAAGTTTCCAACGAAACTTCCTTTTAAGATGGGAGGCTGGTCCAAAAGCGATAGATGGTGTTTGGGCTCCATGGTGGTACGAAACTGCGCATAAATCAACAGGCTTTCAACCACCAACAAAATATCCTGTGCCATTCCCTATGTCTCTGTATGACGTACTTGAGCAAAGTCTACCTTTCTACAACTTTCTTAGGCGCCATGTGAGGCAGACATCGAGCCTTCTGAAGTCTCCTTTGCCTGAGCCCGATCTTCCAGTTCCAGAAAATAAGAAGCTACTTGCATGGGTTGGTGATCAGATTGTACCGCGCGAGAGTGCAAAGATACCTGTACACGAGACACTTGATAATTTGGATTCAAAGATTCACCACAATAACCTACTCAATAATATACTTGCAAAGATAGAAGGCAACAACGCAAATGCTGATGATGCAATCATGCTTGACAATGATGGCTATGTGTCTGAAACAAACGCTACGAACATTTTTTTGGTGAAGAAAGGCTGTGTTTTGACTCCTCATGCTGATTGCTGCCTTCCTGGCATTACTCGAGCAACGGTGATGGACCTTGTAGTGAAGGAGAAGTTGGTCTTAGAGGAGAGAAGGATCAGCCTATCAGAGTTCCATACTGCGGACGAGAGAGGAGAAGGTTTTGTGCAGATTTCCATATCTTCTTCGTCTGTGAACATGTCTACAGGTATGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

460

Amino Acids

51.97

Weight (kDa)

5.38

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_5 PF19798 56 - 290 5.1e-31 Sulfotransferase domain
Aminotran_4 PF01063 341 - 437 4.8e-24 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 765
AccB1I GGYRCC 1 cut(s) 870
AccI GTMKAC 3 cut(s) 74, 847, 1364
AccII CGCG 2 cut(s) 982, 984
AccIII TCCGGA 1 cut(s) 438
AciI CCGC 3 cut(s) 609, 980, 1304
AclWI GGATC 3 cut(s) 430, 584, 1286
AcuI CTGAAG 2 cut(s) 51, 920
AcyI GRCGYC 1 cut(s) 871
AfaI GTAC 5 cut(s) 89, 755, 834, 978, 1005
AfiI CCNNNNNNNGG 3 cut(s) 154, 546, 1303
AflIII ACRYGT 2 cut(s) 382, 1359
AgsI TTSAA 4 cut(s) 121, 584, 785, 1032
AjnI CCWGG 3 cut(s) 337, 489, 1210
AjuI GAANNNNNNNTTGG 4 cut(s) 1145, 1177, 1241, 1273
AleI CACNNNNGTG 1 cut(s) 209
AluBI AGCT 3 cut(s) 10, 29, 949
AluI AGCT 3 cut(s) 10, 29, 949
Alw21I GWGCWC 2 cut(s) 12, 195
Alw26I GTCTC 4 cut(s) 119, 825, 909, 1004
AlwI GGATC 3 cut(s) 430, 584, 1286
AlwNI CAGNNNCTG 2 cut(s) 29, 257
Ama87I CYCGRG 1 cut(s) 1221
Aor13HI TCCGGA 1 cut(s) 438
AoxI GGCC 2 cut(s) 145, 263
ApeKI GCWGC 3 cut(s) 550, 572, 1203
Asp700I GAANNNNTTC 2 cut(s) 42, 680
AspLEI GCGC 3 cut(s) 766, 873, 984
AspS9I GGNCC 3 cut(s) 264, 716, 1237
AsuHPI GGTGA 5 cut(s) 511, 977, 1031, 1177, 1243
AvaI CYCGRG 1 cut(s) 1221
AvaII GGWCC 2 cut(s) 716, 1237
AxyI CCTNAGG 1 cut(s) 594
BaeGI GKGCMC 1 cut(s) 108
BanI GGYRCC 1 cut(s) 870
BanII GRGCYC 4 cut(s) 12, 537, 745, 921
BauI CACGAG 1 cut(s) 1007
BbsI GAAGAC 1 cut(s) 627
Bbv12I GWGCWC 2 cut(s) 12, 195
BbvI GCAGC 3 cut(s) 562, 584, 1190
BccI CCATC 6 cut(s) 296, 569, 699, 725, 1118, 1228
BciT130I CCWGG 3 cut(s) 339, 491, 1212
BclI TGATCA 1 cut(s) 967
BcoDI GTCTC 4 cut(s) 119, 825, 909, 1004
BfaI CTAG 2 cut(s) 399, 587
BfmI CTRYAG 2 cut(s) 268, 1365
BfoI RGCGCY 1 cut(s) 874
BglI GCCNNNNNGGC 1 cut(s) 1212
BisI GCNGC 3 cut(s) 551, 573, 1204
BlsI GCNGC 3 cut(s) 552, 574, 1205
Bme1390I CCNGG 3 cut(s) 339, 491, 1212
Bme18I GGWCC 2 cut(s) 716, 1237
BmeT110I CYCGRG 1 cut(s) 1221
BmgT120I GGNCC 3 cut(s) 264, 716, 1237
BmiI GGNNCC 3 cut(s) 297, 744, 872
BmrFI CCNGG 3 cut(s) 339, 491, 1212
BmrI ACTGGG 1 cut(s) 554
BmsI GCATC 3 cut(s) 470, 559, 1093
BmuI ACTGGG 1 cut(s) 554
BpiI GAAGAC 1 cut(s) 627
BpmI CTGGAG 1 cut(s) 94
Bpu10I CCTNAGC 2 cut(s) 194, 915
BpuEI CTTGAG 1 cut(s) 857
BsaHI GRCGYC 1 cut(s) 871
BsaJI CCNNGG 2 cut(s) 489, 746
BsaWI WCCGGW 1 cut(s) 438
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 546, 1303
Bse1I ACTGG 3 cut(s) 111, 549, 929
Bse21I CCTNAGG 1 cut(s) 594
BseAI TCCGGA 1 cut(s) 438
BseBI CCWGG 3 cut(s) 339, 491, 1212
BseDI CCNNGG 2 cut(s) 489, 746
BseGI GGATG 2 cut(s) 205, 461
BseLI CCNNNNNNNGG 3 cut(s) 154, 546, 1303
BseMII CTCAG 3 cut(s) 208, 585, 906
BseNI ACTGG 3 cut(s) 111, 549, 929
BseRI GAGGAG 4 cut(s) 290, 1179, 1283, 1329
BseSI GKGCMC 1 cut(s) 108
BseXI GCAGC 3 cut(s) 562, 584, 1190
BsgI GTGCAG 1 cut(s) 1349
Bsh1236I CGCG 2 cut(s) 982, 984
BshFI GGCC 2 cut(s) 147, 265
BshNI GGYRCC 1 cut(s) 870
BsiHKAI GWGCWC 2 cut(s) 12, 195
BsiHKCI CYCGRG 1 cut(s) 1221
BsiSI CCGG 1 cut(s) 439
BslFI GGGAC 2 cut(s) 170, 472
BslI CCNNNNNNNGG 3 cut(s) 154, 546, 1303
BsmAI GTCTC 4 cut(s) 119, 825, 909, 1004
BsmFI GGGAC 2 cut(s) 170, 472
BsnI GGCC 2 cut(s) 147, 265
BsoBI CYCGRG 1 cut(s) 1221
Bsp1286I GDGCHC 6 cut(s) 12, 108, 195, 537, 745, 921
Bsp13I TCCGGA 1 cut(s) 438
Bsp1407I TGTACA 1 cut(s) 1003
Bsp143I GATC 6 cut(s) 65, 435, 589, 922, 967, 1278
Bsp19I CCATGG 1 cut(s) 746
BspACI CCGC 3 cut(s) 609, 980, 1304
BspANI GGCC 2 cut(s) 147, 265
BspCNI CTCAG 3 cut(s) 207, 586, 907
BspEI TCCGGA 1 cut(s) 438
BspFNI CGCG 2 cut(s) 982, 984
BspHI TCATGA 1 cut(s) 672
BspLI GGNNCC 3 cut(s) 297, 744, 872
BspPI GGATC 3 cut(s) 430, 584, 1286
BspT107I GGYRCC 1 cut(s) 870
BsrGI TGTACA 1 cut(s) 1003
BsrI ACTGG 3 cut(s) 111, 549, 929
BssECI CCNNGG 2 cut(s) 489, 746
BssMI GATC 6 cut(s) 65, 435, 589, 922, 967, 1278
BssNI GRCGYC 1 cut(s) 871
BssSI CACGAG 1 cut(s) 1007
BssT1I CCWWGG 1 cut(s) 746
Bst2BI CACGAG 1 cut(s) 1007
Bst2UI CCWGG 3 cut(s) 339, 491, 1212
Bst4CI ACNGT 4 cut(s) 72, 228, 335, 1231
Bst6I CTCTTC 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 871
BstAPI GCANNNNNTGC 1 cut(s) 385
BstAUI TGTACA 1 cut(s) 1003
BstDEI CTNAG 5 cut(s) 194, 594, 866, 915, 1264
BstDSI CCRYGG 1 cut(s) 746
BstEII GGTNACC 1 cut(s) 517
BstF5I GGATG 2 cut(s) 205, 461
BstFNI CGCG 2 cut(s) 982, 984
BstH2I RGCGCY 1 cut(s) 874
BstHHI GCGC 3 cut(s) 766, 873, 984
BstKTI GATC 6 cut(s) 68, 438, 592, 925, 970, 1281
BstMAI GTCTC 4 cut(s) 119, 825, 909, 1004
BstMBI GATC 6 cut(s) 65, 435, 589, 922, 967, 1278
BstMWI GCNNNNNNNGC 4 cut(s) 385, 649, 1103, 1212
BstNI CCWGG 3 cut(s) 339, 491, 1212
BstNSI RCATGY 1 cut(s) 1363
BstPI GGTNACC 1 cut(s) 517
BstSCI CCNGG 3 cut(s) 337, 489, 1210
BstSFI CTRYAG 2 cut(s) 268, 1365
BstSLI GKGCMC 1 cut(s) 108
BstUI CGCG 2 cut(s) 982, 984
BstV1I GCAGC 3 cut(s) 562, 584, 1190
BstV2I GAAGAC 1 cut(s) 627
BstX2I RGATCY 1 cut(s) 589
BstYI RGATCY 1 cut(s) 589
Bsu36I CCTNAGG 1 cut(s) 594
BsuRI GGCC 2 cut(s) 147, 265
BtgI CCRYGG 1 cut(s) 746
BtsCI GGATG 2 cut(s) 205, 461
BtsIMutI CAGTG 3 cut(s) 68, 224, 1375
CaiI CAGNNNCTG 2 cut(s) 29, 257
CciI TCATGA 1 cut(s) 672
CfoI GCGC 3 cut(s) 766, 873, 984
Cfr13I GGNCC 3 cut(s) 264, 716, 1237
Csp6I GTAC 5 cut(s) 88, 754, 833, 977, 1004
CviQI GTAC 5 cut(s) 88, 754, 833, 977, 1004
DdeI CTNAG 5 cut(s) 194, 594, 866, 915, 1264
DinI GGCGCC 1 cut(s) 872
DpnI GATC 6 cut(s) 67, 437, 591, 924, 969, 1280
DpnII GATC 6 cut(s) 65, 435, 589, 922, 967, 1278
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 746
Eco147I AGGCCT 1 cut(s) 147
Eco24I GRGCYC 4 cut(s) 12, 537, 745, 921
Eco32I GATATC 1 cut(s) 325
Eco47I GGWCC 2 cut(s) 716, 1237
Eco53kI GAGCTC 1 cut(s) 10
Eco57I CTGAAG 2 cut(s) 51, 920
Eco81I CCTNAGG 1 cut(s) 594
Eco88I CYCGRG 1 cut(s) 1221
Eco91I GGTNACC 1 cut(s) 517
EcoICRI GAGCTC 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 264
EcoO65I GGTNACC 1 cut(s) 517
EcoRII CCWGG 3 cut(s) 337, 489, 1210
EcoRV GATATC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 746
EcoT38I GRGCYC 4 cut(s) 12, 537, 745, 921
EgeI GGCGCC 1 cut(s) 872
EheI GGCGCC 1 cut(s) 872
ErhI CCWWGG 1 cut(s) 746
FalI AAGNNNNNCTT 4 cut(s) 835, 867, 1247, 1279
FaqI GGGAC 2 cut(s) 170, 472
FbaI TGATCA 1 cut(s) 967
FblI GTMKAC 3 cut(s) 74, 847, 1364
Fnu4HI GCNGC 3 cut(s) 551, 573, 1204
FokI GGATG 2 cut(s) 212, 448
FriOI GRGCYC 4 cut(s) 12, 537, 745, 921
Fsp4HI GCNGC 3 cut(s) 551, 573, 1204
FspBI CTAG 2 cut(s) 399, 587
FspI TGCGCA 1 cut(s) 765
GlaI GCGC 3 cut(s) 765, 872, 983
GluI GCNGC 3 cut(s) 551, 573, 1204
GsuI CTGGAG 1 cut(s) 94
HaeII RGCGCY 1 cut(s) 874
HaeIII GGCC 2 cut(s) 147, 265
HapII CCGG 1 cut(s) 439
HhaI GCGC 3 cut(s) 766, 873, 984
Hin1I GRCGYC 1 cut(s) 871
Hin6I GCGC 3 cut(s) 764, 871, 982
HinP1I GCGC 3 cut(s) 764, 871, 982
HinfI GANTC 5 cut(s) 43, 442, 1028, 1036, 1186
HpaII CCGG 1 cut(s) 439
HphI GGTGA 5 cut(s) 511, 977, 1031, 1177, 1243
Hpy166II GTNNAC 5 cut(s) 75, 848, 1006, 1357, 1365
Hpy188I TCNGA 7 cut(s) 141, 259, 435, 900, 972, 1138, 1291
Hpy188III TCNNGA 5 cut(s) 13, 439, 593, 673, 935
Hpy8I GTNNAC 5 cut(s) 75, 848, 1006, 1357, 1365
HpyAV CCTTC 9 cut(s) 406, 410, 440, 905, 1073, 1217, 1243, 1269, 1313
HpyCH4III ACNGT 4 cut(s) 72, 228, 335, 1231
HpyCH4IV ACGT 2 cut(s) 382, 831
HpyCH4V TGCA 9 cut(s) 233, 244, 572, 956, 992, 1070, 1106, 1330, 1375
HpyF10VI GCNNNNNNNGC 4 cut(s) 385, 649, 1103, 1212
HpyF3I CTNAG 5 cut(s) 194, 594, 866, 915, 1264
HpySE526I ACGT 2 cut(s) 382, 831
Hsp92I GRCGYC 1 cut(s) 871
HspAI GCGC 3 cut(s) 764, 871, 982
KasI GGCGCC 1 cut(s) 870
Kpn2I TCCGGA 1 cut(s) 438
Ksp22I TGATCA 1 cut(s) 967
Kzo9I GATC 6 cut(s) 65, 435, 589, 922, 967, 1278
LmnI GCTCC 1 cut(s) 748
Lsp1109I GCAGC 3 cut(s) 562, 584, 1190
LweI GCATC 3 cut(s) 470, 559, 1093
MaeI CTAG 2 cut(s) 399, 587
MaeII ACGT 2 cut(s) 382, 831
MaeIII GTNAC 2 cut(s) 247, 517
MalI GATC 6 cut(s) 67, 437, 591, 924, 969, 1280
MboI GATC 6 cut(s) 65, 435, 589, 922, 967, 1278
MboII GAAGA 8 cut(s) 17, 109, 354, 632, 917, 1180, 1335, 1338
MflI RGATCY 1 cut(s) 589
MhlI GDGCHC 6 cut(s) 12, 108, 195, 537, 745, 921
MluCI AATT 4 cut(s) 392, 497, 655, 1021
Mly113I GGCGCC 1 cut(s) 871
MlyI GAGTC 1 cut(s) 1180
MmeI TCCRAC 1 cut(s) 709
MroI TCCGGA 1 cut(s) 438
MroXI GAANNNNTTC 2 cut(s) 42, 680
MseI TTAA 2 cut(s) 605, 701
MslI CAYNNNNRTG 1 cut(s) 209
MspI CCGG 1 cut(s) 439
MspR9I CCNGG 3 cut(s) 339, 491, 1212
MvaI CCWGG 3 cut(s) 339, 491, 1212
MvnI CGCG 2 cut(s) 982, 984
MwoI GCNNNNNNNGC 4 cut(s) 385, 649, 1103, 1212
NarI GGCGCC 1 cut(s) 871
NcoI CCATGG 1 cut(s) 746
NdeII GATC 6 cut(s) 65, 435, 589, 922, 967, 1278
NlaIV GGNNCC 3 cut(s) 297, 744, 872
NmuCI GTSAC 2 cut(s) 247, 517
NsbI TGCGCA 1 cut(s) 765
NspI RCATGY 1 cut(s) 1363
OliI CACNNNNGTG 1 cut(s) 209
PaeR7I CTCGAG 1 cut(s) 1221
PagI TCATGA 1 cut(s) 672
PceI AGGCCT 1 cut(s) 147
PciI ACATGT 1 cut(s) 1359
PdmI GAANNNNTTC 2 cut(s) 42, 680
PfeI GAWTC 4 cut(s) 43, 442, 1028, 1036
PfoI TCCNGGA 1 cut(s) 337
PkrI GCNGC 3 cut(s) 552, 574, 1205
PleI GAGTC 1 cut(s) 1180
PluTI GGCGCC 1 cut(s) 874
PpsI GAGTC 1 cut(s) 1180
PscI ACATGT 1 cut(s) 1359
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 3 cut(s) 337, 489, 1210
PspEI GGTNACC 1 cut(s) 517
PspGI CCWGG 3 cut(s) 337, 489, 1210
PspN4I GGNNCC 3 cut(s) 297, 744, 872
PspPI GGNCC 3 cut(s) 264, 716, 1237
PspXI VCTCGAGB 1 cut(s) 1221
PstNI CAGNNNCTG 2 cut(s) 29, 257
PsuI RGATCY 1 cut(s) 589
RsaI GTAC 5 cut(s) 89, 755, 834, 978, 1005
RsaNI GTAC 5 cut(s) 88, 754, 833, 977, 1004
RseI CAYNNNNRTG 1 cut(s) 209
SacI GAGCTC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 605, 701
SatI GCNGC 3 cut(s) 551, 573, 1204
Sau3AI GATC 6 cut(s) 65, 435, 589, 922, 967, 1278
Sau96I GGNCC 3 cut(s) 264, 716, 1237
SchI GAGTC 1 cut(s) 1180
ScrFI CCNGG 3 cut(s) 339, 491, 1212
SduI GDGCHC 6 cut(s) 12, 108, 195, 537, 745, 921
SfaNI GCATC 3 cut(s) 470, 559, 1093
SfcI CTRYAG 2 cut(s) 268, 1365
SfoI GGCGCC 1 cut(s) 872
Sfr274I CTCGAG 1 cut(s) 1221
SinI GGWCC 2 cut(s) 716, 1237
SlaI CTCGAG 1 cut(s) 1221
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 3 cut(s) 11, 836, 1221
SmoI CTYRAG 3 cut(s) 11, 836, 1221
Sse9I AATT 4 cut(s) 392, 497, 655, 1021
SseBI AGGCCT 1 cut(s) 147
SsiI CCGC 3 cut(s) 609, 980, 1304
SspDI GGCGCC 1 cut(s) 870
SspI AATATT 1 cut(s) 124
SspMI CTAG 2 cut(s) 399, 587
SstI GAGCTC 1 cut(s) 12
StuI AGGCCT 1 cut(s) 147
StyD4I CCNGG 3 cut(s) 337, 489, 1210
StyI CCWWGG 1 cut(s) 746
TaaI ACNGT 4 cut(s) 72, 228, 335, 1231
TaiI ACGT 2 cut(s) 385, 834
TaqI TCGA 2 cut(s) 890, 1222
TasI AATT 4 cut(s) 392, 497, 655, 1021
TatI WGTACW 2 cut(s) 87, 1003
TfiI GAWTC 4 cut(s) 43, 442, 1028, 1036
Tru1I TTAA 2 cut(s) 605, 701
Tru9I TTAA 2 cut(s) 605, 701
TscAI CASTG 2 cut(s) 75, 231
TseFI GTSAC 2 cut(s) 247, 517
TseI GCWGC 3 cut(s) 550, 572, 1203
Tsp45I GTSAC 2 cut(s) 247, 517
TspDTI ATGAA 4 cut(s) 234, 425, 661, 689
TspGWI ACGGA 1 cut(s) 474
TspRI CASTG 2 cut(s) 75, 231
VpaK11BI GGWCC 2 cut(s) 716, 1237
XceI RCATGY 1 cut(s) 1363
XhoI CTCGAG 1 cut(s) 1221
XmiI GTMKAC 3 cut(s) 74, 847, 1364
XmnI GAANNNNTTC 2 cut(s) 42, 680
XspI CTAG 2 cut(s) 399, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.