Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003746

Physical Location & Seq

Genomic Coordinates Forward (+)

3739688 .. 3749534

Gene Structure 9847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G004300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2883 bp

ATGGCGGACCAGGAGCTCCATCTGCTCTCAGCTTTCCTGGCTATGGAGCCCACAGACTCTCTGATCGGCCTAGCCAGGGAATGCGGTGGAGGGTCGGTCACTGAGAGAGTTCAGAGGTTTATTTGGGAGCATTGCATAACCAAATATGCGGGGAAACTACATGCGCCTTATCTGAGGATGTTTCTGAAGAAGCTTATTGCTGAAGTTGAGTTGAACCACGGTGATGTGATTGATGAGTTATACGAACATTATGCACATTACATGACTACTTTGAAGGAGAATGATTTGGAGAAAGCTAATGCAAGGGTGTTCAAGTACATTTCATTTCTTTTTCCTGATGGTTGTCTTGAACTTTCAAGATGTTTGGAATCAAGGAAACTGATGGTGCAGCTGCAATGTTCTCTCAACATGCTTGAAGGAGATACTGGGTGTTCAGTCTGGCCATCAAGTCTTCTTTTGTCAGAGTGCATACTTTCATTTCCAGAATTGTTCTCTAATAAGTCGTGCTTTGAGGTTGGTTCAGGTGTTGGTTTGGTTGGCATCTGTCTTGCCCATGTGAAAGCATCCAAGGTCATACTAAGTGATGGTGACCTGTCAACTCTAGCAAACATGAAGCTTAATCTGGAACTGAACCACTTGAGCGTTGAAACTGATATGTCAGAAACTACTGAAGATCCAAATATGGTAAAATGCATTCATCTGCCATGGGAATCTGTGTCGGAGAAGGAGCTTCAAAACCACAAGCCAGATATAATTTTGGGTGCAGATGTAATATATGATCCCGTATGCCTCCCACATCTTGTTCGAGTACTTACCCTTCTTCTAAACCAGGAAAAACCATATCCTGACCAGTGCAGTAATAATCATCCCGTCTTTTCCTTGGGAAGTAAATGTAGTAGTGATGCTAAAGTCAATGCAACTCATCAAGCAAATGCTAGCAATGGTGATGAATCCGTTGCTTCTCTATGCAAAAGAACAGACAATGGTGCATCACATGTTGGATTGAAGAAACGTCCGACAGCTTTAATTGCTTCTGTCATTCGCAATGTCGACACATTCAATAAGTTTCTTACTCTGCTAGACGAGGCCAACCTTACGATCGAAGACCTAACTGAATCGCATAGGCCTCTAAATTTTCTTCCTTACTTGAAGTCATATGATCGCAGCACCGTACGACTTCACCAACTCACCATGGCAGAGCTGAAGAACCAAGGAGAGGTTGCAGTGGAGCCGATTCATTTATGGGCTACCCCAAGATCACTGAGTACAAGCCTCATGTACTCTTTTGCTCAGAGGGATGACATAGAAGTGCTTGATGAACCGCTCTACGCAACTTTCCTTCGGGTGACAGGTTTCGATAGGCCCTACAGGGAGGAAGTACTTTCCCAAATGGAACCTGATGGAAATAAAGTCGTAAATGATATCATTCTTGGTCCAGGAAGCAAGAAGTATCGCTTCTGTAAGCATATAGCAAAGCAACGTGTCCCTGGCTTACCAATTGATCTAATGAAGAAAGGAAAGCATGTCATTTTGACGAGGAATCCCCTTGATATATTGCCATCCTTTGGCAAGGTTGTGCCTCCAACCCTTGTTGAGTTAGGTTTCGCAGATCTGGTCTGTATATACAGTGAGCTCTCCCAATTGGGGAAGCCCCCACCTGTCATTGTTGCAGCCGAACTTCAAGAAGATCCTGAGCGTACACTGCGCGGACTTTGTGAAGACTTGGATATCCCTTTTCAGTCCACAATGCTCAAGTGGGAGGCTGGTCCGAAACCAGTAGATGGCATTTGGGCTCCATGGTGGTATGAGAGTGTGCATAAATCAACATGCTTTCAGCCAGCAAAAAAATATCCCATGCCATTTCCTTTTCCTCTGTATGATGTACTTGAGCAAAGTCTACCCTTCTACAACTTCCTTCGACGCCATATGAGGCAGACATCATGCCTTATGAAGTCTGGTTTGCCTGAACCTGAACTCCCAGTTCCAGAAAATGAGAAGTTACTTGCATGGGTTGGTGATGAGATTGTTCCACGAGAGAGTGCAAAGGTTTCTGTGTTCGACTCGGTTGTCCAAGGTGGTGATTCAGTTTGGGAGGGACTTCGAGTTTACCAGGGGAAAATATTTAAGCTTGAAGAACATTTGGATAGGTTATTTGACTCAGCAAAGGCTTTGGCATTCAACAATGTTCCTACTCGTGAAGAGGTTAAAGAAGCCATATTCAGAACTCTTATTCGGAATGGAATGTTTGACAATTCACACATCCGACTAAGTTTAACTCGTGGAAAAAAGGTTACTTCTGGCATGAGCCCAGCATTCAATCTTTACGGATGCACCTTGATTGTGCTTGCTGAATGGAAACCCCCCGTGTATGACAATACAAAGGGTATAACTCTTGTTACAGCTACAACACGTCGTAATTCACCGAATAATTTGGATTCAAAGATTCACCACAATAACCTGCTCAACAATATCCTTGCAAAGATAGAAGGCAATAATGCAAGCGCTGATGATGCAATCATGCTTGACAAGGATGGTTATGTATCTGAGACAAATGCTACAAACATTTTTTTAGTGAAGAAAGGTCGTGTATTGACACCTCATGCTGATTACTGCCTTCCTGGTGTGACTCGAGCAACTGTTATGGACCTTGTGGTGCAGGAGAAGTTTCCCCTACAGGAGAGAAATATCAGCCTATCAGAGTTCCATACTGCAGATGAGGTATGGACAACCGGAACAATGGGAGAACTCAGTCCTGTTGTGAAGATTGATGGGCGTCTAGTTGGTGACGGAAAAGTGGGGCCCGTGACCCGAAGATTGCAAAATGCTTACAAACAGCTGACAGCAGAGTCTGGGGTGCCAATACCAACCTATCATGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_4 Methyltransf_16

Protein Analysis

960

Amino Acids

107.58

Weight (kDa)

5.91

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_16	PF10294	136 - 278	3.7e-18	Lysine methyltransferase
Sulfotransfer_5	PF19798	414 - 640	2.1e-43	Sulfotransferase domain
Aminotran_4	PF01063	696 - 922	5.1e-49	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05190 AT3G05190 AT3G05190 AT5G27410 AT5G27410 AT5G27410 AT5G27410
fragaria_vesca	FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350
malus_domestica	MD04G1209000.v1.1 MD12G1223500.v1.1 MD12G1223700.v1.1
prunus_persica	Prupe.6G330000_v2.0.a1 Prupe.6G330000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454121
rosa_laevigata	RLG00000025481
rosa_multiflora	Rmu_co8200578.1_g000001 Rmu_co8412533.1_g000001 Rmu_sc0018584.1_g000004 Rmu_sc0024384.1_g000001 Rmu_sc0026189.1_g000001
rosa_roxburghii	Rroxscaffold_165G00436900
rosa_rugosa	Rorug02G0653400 Rorug02G0653500
rosa_samantha	Rh3AG056100 Rh3BG057500 Rh3CG056800 Rh3DG058000
rosa_wichuraiana	Rw3G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	2066, 2845
Acc36I	ACCTGC	1 cut(s)	2466
AccB1I	GGYRCC	1 cut(s)	2854
AccB7I	CCANNNNNTGG	2 cut(s)	1565, 1781
AccBSI	CCGCTC	1 cut(s)	1324
AccI	GTMKAC	2 cut(s)	1050, 1897
AccII	CGCG	1 cut(s)	1707
AciI	CCGC	5 cut(s)	5, 84, 149, 1322, 1707
AclWI	GGATC	3 cut(s)	668, 773, 1682
AcoI	YGGCCR	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	1132
AcuI	CTGAAG	4 cut(s)	206, 222, 690, 1223
AcyI	GRCGYC	2 cut(s)	1921, 2773
AfaI	GTAC	8 cut(s)	317, 810, 1173, 1267, 1280, 1380, 1699, 1884
AfeI	AGCGCT	1 cut(s)	2503
AfiI	CCNNNNNNNGG	6 cut(s)	43, 76, 1216, 1565, 1644, 1781
AflIII	ACRYGT	3 cut(s)	994, 1480, 2408
AjiI	CACGTC	1 cut(s)	2411
AjnI	CCWGG	8 cut(s)	9, 36, 74, 828, 1435, 1486, 2109, 2617
AloI	GAACNNNNNNTCC	2 cut(s)	1959, 1991
Alw21I	GWGCWC	2 cut(s)	18, 1635
Alw26I	GTCTC	1 cut(s)	2540
AlwI	GGATC	3 cut(s)	668, 773, 1682
AlwNI	CAGNNNCTG	1 cut(s)	2849
Ama87I	CYCGRG	1 cut(s)	2628
Aor51HI	AGCGCT	1 cut(s)	2503
AoxI	GGCC	6 cut(s)	67, 440, 1086, 1124, 1361, 2798
ApaI	GGGCCC	1 cut(s)	2802
ApeKI	GCWGC	4 cut(s)	388, 391, 1164, 1670
ApoI	RAATTY	1 cut(s)	1132
AspLEI	GCGC	3 cut(s)	166, 1707, 2504
AspS9I	GGNCC	7 cut(s)	7, 1362, 1433, 1766, 2644, 2798, 2799
AsuNHI	GCTAGC	1 cut(s)	935
AvaI	CYCGRG	1 cut(s)	2628
AvaII	GGWCC	4 cut(s)	7, 1433, 1766, 2644
BaeGI	GKGCMC	1 cut(s)	2802
BalI	TGGCCA	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	2854
BanII	GRGCYC	6 cut(s)	18, 51, 1635, 1795, 2309, 2802
BarI	GAAGNNNNNNTAC	2 cut(s)	801, 833
BauI	CACGAG	3 cut(s)	2031, 2193, 2277
BbsI	GAAGAC	3 cut(s)	443, 1110, 1725
Bbv12I	GWGCWC	2 cut(s)	18, 1635
BbvI	GCAGC	4 cut(s)	378, 400, 1176, 1682
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	8 cut(s)	11, 38, 76, 830, 1437, 1488, 2111, 2619
BcoDI	GTCTC	1 cut(s)	2540
BfaI	CTAG	5 cut(s)	71, 602, 936, 1079, 2777
BfmI	CTRYAG	3 cut(s)	1366, 2672, 2709
BfoI	RGCGCY	1 cut(s)	2505
BfuAI	ACCTGC	1 cut(s)	2466
BglII	AGATCT	1 cut(s)	1609
BisI	GCNGC	4 cut(s)	389, 392, 1165, 1671
BlsI	GCNGC	4 cut(s)	390, 393, 1166, 1672
BmcAI	AGTACT	2 cut(s)	810, 1380
Bme1390I	CCNGG	8 cut(s)	11, 38, 76, 830, 1437, 1488, 2111, 2619
Bme18I	GGWCC	4 cut(s)	7, 1433, 1766, 2644
BmeT110I	CYCGRG	1 cut(s)	2628
BmgBI	CACGTC	1 cut(s)	2411
BmgT120I	GGNCC	7 cut(s)	7, 1362, 1433, 1766, 2644, 2798, 2799
BmiI	GGNNCC	7 cut(s)	48, 1230, 1395, 1794, 2799, 2800, 2856
BmrFI	CCNGG	8 cut(s)	11, 38, 76, 830, 1437, 1488, 2111, 2619
BmrI	ACTGGG	2 cut(s)	435, 1973
BmsI	GCATC	6 cut(s)	549, 572, 892, 998, 2318, 2500
BmtI	GCTAGC	1 cut(s)	939
BmuI	ACTGGG	2 cut(s)	435, 1973
BpiI	GAAGAC	3 cut(s)	443, 1110, 1725
Bpu10I	CCTNAGC	1 cut(s)	1692
BpuEI	CTTGAG	3 cut(s)	658, 1736, 1907
BsaHI	GRCGYC	2 cut(s)	1921, 2773
BsaWI	WCCGGW	1 cut(s)	2729
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 1959, 1989
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 76, 1216, 1565, 1644, 1781
Bse1I	ACTGG	4 cut(s)	430, 850, 1775, 1979
Bse3DI	GCAATG	4 cut(s)	130, 401, 946, 1051
BseBI	CCWGG	8 cut(s)	11, 38, 76, 830, 1437, 1488, 2111, 2619
BseGI	GGATG	8 cut(s)	183, 563, 865, 1303, 1559, 2259, 2333, 2536
BseLI	CCNNNNNNNGG	6 cut(s)	43, 76, 1216, 1565, 1644, 1781
BseMI	GCAATG	4 cut(s)	130, 401, 946, 1051
BseMII	CTCAG	9 cut(s)	42, 93, 164, 1253, 1304, 1683, 2172, 2535, 2761
BseNI	ACTGG	4 cut(s)	430, 850, 1775, 1979
BseSI	GKGCMC	1 cut(s)	2802
BseXI	GCAGC	4 cut(s)	378, 400, 1176, 1682
BseYI	CCCAGC	1 cut(s)	2308
BsgI	GTGCAG	4 cut(s)	407, 783, 874, 2675
Bsh1236I	CGCG	1 cut(s)	1707
Bsh1285I	CGRYCG	1 cut(s)	1101
BshFI	GGCC	6 cut(s)	69, 442, 1088, 1126, 1363, 2800
BshNI	GGYRCC	1 cut(s)	2854
BsiEI	CGRYCG	1 cut(s)	1101
BsiHKAI	GWGCWC	2 cut(s)	18, 1635
BsiHKCI	CYCGRG	1 cut(s)	2628
BsiSI	CCGG	1 cut(s)	2730
BsiWI	CGTACG	1 cut(s)	1171
BslFI	GGGAC	2 cut(s)	1469, 2109
BslI	CCNNNNNNNGG	6 cut(s)	43, 76, 1216, 1565, 1644, 1781
BsmAI	GTCTC	1 cut(s)	2540
BsmFI	GGGAC	2 cut(s)	1469, 2109
BsmI	GAATGC	4 cut(s)	86, 693, 2174, 2312
BsnI	GGCC	6 cut(s)	69, 442, 1088, 1126, 1363, 2800
BsoBI	CYCGRG	1 cut(s)	2628
Bsp120I	GGGCCC	1 cut(s)	2798
Bsp1286I	GDGCHC	6 cut(s)	18, 51, 1635, 1795, 2309, 2802
Bsp143I	GATC	9 cut(s)	63, 673, 778, 1098, 1159, 1256, 1501, 1609, 1687
Bsp19I	CCATGG	3 cut(s)	704, 1191, 1796
BspACI	CCGC	5 cut(s)	5, 84, 149, 1322, 1707
BspANI	GGCC	6 cut(s)	69, 442, 1088, 1126, 1363, 2800
BspCNI	CTCAG	9 cut(s)	41, 94, 165, 1254, 1303, 1684, 2171, 2536, 2760
BspFNI	CGCG	1 cut(s)	1707
BspHI	TCATGA	1 cut(s)	2872
BspLI	GGNNCC	7 cut(s)	48, 1230, 1395, 1794, 2799, 2800, 2856
BspMAI	CTGCAG	1 cut(s)	2713
BspMI	ACCTGC	1 cut(s)	2466
BspOI	GCTAGC	1 cut(s)	939
BspPI	GGATC	3 cut(s)	668, 773, 1682
BspT107I	GGYRCC	1 cut(s)	2854
BsrBI	CCGCTC	1 cut(s)	1324
BsrDI	GCAATG	4 cut(s)	130, 401, 946, 1051
BsrI	ACTGG	4 cut(s)	430, 850, 1775, 1979
BssMI	GATC	9 cut(s)	63, 673, 778, 1098, 1159, 1256, 1501, 1609, 1687
BssNI	GRCGYC	2 cut(s)	1921, 2773
BssSI	CACGAG	3 cut(s)	2031, 2193, 2277
BssT1I	CCWWGG	7 cut(s)	567, 704, 879, 1191, 1210, 1796, 2071
Bst2BI	CACGAG	3 cut(s)	2031, 2193, 2277
Bst2UI	CCWGG	8 cut(s)	11, 38, 76, 830, 1437, 1488, 2111, 2619
Bst4CI	ACNGT	4 cut(s)	221, 1171, 1628, 2638
Bst6I	CTCTTC	1 cut(s)	2193
BstACI	GRCGYC	2 cut(s)	1921, 2773
BstC8I	GCNNGC	4 cut(s)	937, 1839, 2346, 2500
BstDSI	CCRYGG	4 cut(s)	217, 704, 1191, 1796
BstEII	GGTNACC	1 cut(s)	587
BstF5I	GGATG	8 cut(s)	183, 563, 865, 1303, 1559, 2259, 2333, 2536
BstFNI	CGCG	1 cut(s)	1707
BstH2I	RGCGCY	1 cut(s)	2505
BstHHI	GCGC	3 cut(s)	166, 1707, 2504
BstKTI	GATC	9 cut(s)	66, 676, 781, 1101, 1162, 1259, 1504, 1612, 1690
BstMAI	GTCTC	1 cut(s)	2540
BstMBI	GATC	9 cut(s)	63, 673, 778, 1098, 1159, 1256, 1501, 1609, 1687
BstMCI	CGRYCG	1 cut(s)	1101
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 38, 1028, 1702, 2510
BstNI	CCWGG	8 cut(s)	11, 38, 76, 830, 1437, 1488, 2111, 2619
BstNSI	RCATGY	5 cut(s)	164, 412, 998, 1526, 1830
BstPI	GGTNACC	1 cut(s)	587
BstSCI	CCNGG	8 cut(s)	9, 36, 74, 828, 1435, 1486, 2109, 2617
BstSFI	CTRYAG	3 cut(s)	1366, 2672, 2709
BstSLI	GKGCMC	1 cut(s)	2802
BstUI	CGCG	1 cut(s)	1707
BstV1I	GCAGC	4 cut(s)	378, 400, 1176, 1682
BstV2I	GAAGAC	3 cut(s)	443, 1110, 1725
BstX2I	RGATCY	3 cut(s)	673, 1609, 1687
BstYI	RGATCY	3 cut(s)	673, 1609, 1687
BsuRI	GGCC	6 cut(s)	69, 442, 1088, 1126, 1363, 2800
BtgI	CCRYGG	4 cut(s)	217, 704, 1191, 1796
BtrI	CACGTC	1 cut(s)	2411
BtsCI	GGATG	8 cut(s)	183, 563, 865, 1303, 1559, 2259, 2333, 2536
BtsI	GCAGTG	2 cut(s)	1230, 1700
BtsIMutI	CAGTG	6 cut(s)	99, 857, 1230, 1259, 1633, 1700
BveI	ACCTGC	1 cut(s)	2466
Cac8I	GCNNGC	4 cut(s)	937, 1839, 2346, 2500
CaiI	CAGNNNCTG	1 cut(s)	2849
CciI	TCATGA	1 cut(s)	2872
CfoI	GCGC	3 cut(s)	166, 1707, 2504
Cfr13I	GGNCC	7 cut(s)	7, 1362, 1433, 1766, 2644, 2798, 2799
CseI	GACGC	2 cut(s)	1929, 2762
Csp6I	GTAC	8 cut(s)	316, 809, 1172, 1266, 1279, 1379, 1698, 1883
CviQI	GTAC	8 cut(s)	316, 809, 1172, 1266, 1279, 1379, 1698, 1883
DpnI	GATC	9 cut(s)	65, 675, 780, 1100, 1161, 1258, 1503, 1611, 1689
DpnII	GATC	9 cut(s)	63, 673, 778, 1098, 1159, 1256, 1501, 1609, 1687
DrdI	GACNNNNNNGTC	2 cut(s)	2066, 2845
DseDI	GACNNNNNNGTC	2 cut(s)	2066, 2845
EaeI	YGGCCR	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	2193
EarI	CTCTTC	1 cut(s)	2193
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	16, 1633
Eco130I	CCWWGG	7 cut(s)	567, 704, 879, 1191, 1210, 1796, 2071
Eco147I	AGGCCT	1 cut(s)	1126
Eco24I	GRGCYC	6 cut(s)	18, 51, 1635, 1795, 2309, 2802
Eco32I	GATATC	2 cut(s)	1423, 1729
Eco47I	GGWCC	4 cut(s)	7, 1433, 1766, 2644
Eco47III	AGCGCT	1 cut(s)	2503
Eco53kI	GAGCTC	2 cut(s)	16, 1633
Eco57I	CTGAAG	4 cut(s)	206, 222, 690, 1223
Eco88I	CYCGRG	1 cut(s)	2628
Eco91I	GGTNACC	1 cut(s)	587
EcoICRI	GAGCTC	2 cut(s)	16, 1633
EcoO109I	RGGNCCY	2 cut(s)	1362, 2798
EcoO65I	GGTNACC	1 cut(s)	587
EcoRII	CCWGG	8 cut(s)	9, 36, 74, 828, 1435, 1486, 2109, 2617
EcoRV	GATATC	2 cut(s)	1423, 1729
EcoT14I	CCWWGG	7 cut(s)	567, 704, 879, 1191, 1210, 1796, 2071
EcoT22I	ATGCAT	1 cut(s)	695
EcoT38I	GRGCYC	6 cut(s)	18, 51, 1635, 1795, 2309, 2802
ErhI	CCWWGG	7 cut(s)	567, 704, 879, 1191, 1210, 1796, 2071
FalI	AAGNNNNNCTT	4 cut(s)	491, 523, 1439, 1471
FaqI	GGGAC	2 cut(s)	1469, 2109
FauI	CCCGC	1 cut(s)	142
FauNDI	CATATG	2 cut(s)	1156, 1926
FblI	GTMKAC	2 cut(s)	1050, 1897
Fnu4HI	GCNGC	4 cut(s)	389, 392, 1165, 1671
FokI	GGATG	8 cut(s)	190, 550, 852, 1310, 1546, 2246, 2340, 2543
FriOI	GRGCYC	6 cut(s)	18, 51, 1635, 1795, 2309, 2802
Fsp4HI	GCNGC	4 cut(s)	389, 392, 1165, 1671
FspBI	CTAG	5 cut(s)	71, 602, 936, 1079, 2777
GlaI	GCGC	3 cut(s)	165, 1706, 2503
GluI	GCNGC	4 cut(s)	389, 392, 1165, 1671
GsaI	CCCAGC	1 cut(s)	2312
HaeII	RGCGCY	1 cut(s)	2505
HaeIII	GGCC	6 cut(s)	69, 442, 1088, 1126, 1363, 2800
HapII	CCGG	1 cut(s)	2730
HgaI	GACGC	2 cut(s)	1929, 2762
HhaI	GCGC	3 cut(s)	166, 1707, 2504
Hin1I	GRCGYC	2 cut(s)	1921, 2773
Hin6I	GCGC	3 cut(s)	164, 1705, 2502
HinP1I	GCGC	3 cut(s)	164, 1705, 2502
HincII	GTYRAC	2 cut(s)	597, 1051
HindII	GTYRAC	2 cut(s)	597, 1051
HindIII	AAGCTT	3 cut(s)	191, 614, 2126
HpaII	CCGG	1 cut(s)	2730
Hpy166II	GTNNAC	6 cut(s)	597, 1051, 1700, 1743, 1898, 2107
Hpy8I	GTNNAC	6 cut(s)	597, 1051, 1700, 1743, 1898, 2107
Hpy99I	CGWCG	2 cut(s)	1923, 2415
HpyAV	CCTTC	9 cut(s)	268, 410, 718, 827, 1349, 1912, 1925, 2480, 2624
HpyCH4III	ACNGT	4 cut(s)	221, 1171, 1628, 2638
HpyCH4IV	ACGT	3 cut(s)	1012, 1480, 2410
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 38, 1028, 1702, 2510
HpySE526I	ACGT	3 cut(s)	1012, 1480, 2410
Hsp92I	GRCGYC	2 cut(s)	1921, 2773
HspAI	GCGC	3 cut(s)	164, 1705, 2502
Kzo9I	GATC	9 cut(s)	63, 673, 778, 1098, 1159, 1256, 1501, 1609, 1687
LmnI	GCTCC	7 cut(s)	13, 21, 46, 127, 727, 1228, 1798
Lsp1109I	GCAGC	4 cut(s)	378, 400, 1176, 1682
LweI	GCATC	6 cut(s)	549, 572, 892, 998, 2318, 2500
MaeI	CTAG	5 cut(s)	71, 602, 936, 1079, 2777
MaeII	ACGT	3 cut(s)	1012, 1480, 2410
MaeIII	GTNAC	9 cut(s)	97, 587, 1345, 1998, 2290, 2395, 2623, 2783, 2803
MalI	GATC	9 cut(s)	65, 675, 780, 1100, 1161, 1258, 1503, 1611, 1689
MbiI	CCGCTC	1 cut(s)	1324
MboI	GATC	9 cut(s)	63, 673, 778, 1098, 1159, 1256, 1501, 1609, 1687
MfeI	CAATTG	2 cut(s)	1497, 1640
MflI	RGATCY	3 cut(s)	673, 1609, 1687
MhlI	GDGCHC	6 cut(s)	18, 51, 1635, 1795, 2309, 2802
MlsI	TGGCCA	1 cut(s)	442
MluCI	AATT	9 cut(s)	485, 753, 1026, 1132, 1497, 1640, 2251, 2416, 2428
MluNI	TGGCCA	1 cut(s)	442
MlyI	GAGTC	5 cut(s)	50, 2054, 2150, 2620, 2855
MmeI	TCCRAC	5 cut(s)	699, 979, 1040, 1607, 2287
Mox20I	TGGCCA	1 cut(s)	442
Mph1103I	ATGCAT	1 cut(s)	695
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	5 cut(s)	618, 1025, 2124, 2205, 2273
MslI	CAYNNNNRTG	2 cut(s)	222, 1307
Msp20I	TGGCCA	1 cut(s)	442
MspA1I	CMGCKG	2 cut(s)	391, 2836
MspI	CCGG	1 cut(s)	2730
MspR9I	CCNGG	8 cut(s)	11, 38, 76, 830, 1437, 1488, 2111, 2619
MunI	CAATTG	2 cut(s)	1497, 1640
Mva1269I	GAATGC	4 cut(s)	86, 693, 2174, 2312
MvaI	CCWGG	8 cut(s)	11, 38, 76, 830, 1437, 1488, 2111, 2619
MvnI	CGCG	1 cut(s)	1707
MwoI	GCNNNNNNNGC	5 cut(s)	22, 38, 1028, 1702, 2510
NcoI	CCATGG	3 cut(s)	704, 1191, 1796
NdeI	CATATG	2 cut(s)	1156, 1926
NdeII	GATC	9 cut(s)	63, 673, 778, 1098, 1159, 1256, 1501, 1609, 1687
NheI	GCTAGC	1 cut(s)	935
NlaIV	GGNNCC	7 cut(s)	48, 1230, 1395, 1794, 2799, 2800, 2856
NmuCI	GTSAC	6 cut(s)	97, 587, 1345, 2623, 2783, 2803
NsiI	ATGCAT	1 cut(s)	695
NspI	RCATGY	5 cut(s)	164, 412, 998, 1526, 1830
PaeR7I	CTCGAG	1 cut(s)	2628
PagI	TCATGA	1 cut(s)	2872
PceI	AGGCCT	1 cut(s)	1126
PciI	ACATGT	1 cut(s)	994
PctI	GAATGC	4 cut(s)	86, 693, 2174, 2312
PfeI	GAWTC	9 cut(s)	368, 710, 950, 1115, 1234, 1540, 2081, 2435, 2443
Pfl23II	CGTACG	1 cut(s)	1171
PflMI	CCANNNNNTGG	2 cut(s)	1565, 1781
PfoI	TCCNGGA	1 cut(s)	1435
PkrI	GCNGC	4 cut(s)	390, 393, 1166, 1672
Ple19I	CGATCG	1 cut(s)	1101
PleI	GAGTC	5 cut(s)	50, 2054, 2150, 2620, 2854
PpsI	GAGTC	5 cut(s)	50, 2054, 2150, 2620, 2854
PscI	ACATGT	1 cut(s)	994
Psp124BI	GAGCTC	2 cut(s)	18, 1635
Psp6I	CCWGG	8 cut(s)	9, 36, 74, 828, 1435, 1486, 2109, 2617
PspEI	GGTNACC	1 cut(s)	587
PspFI	CCCAGC	1 cut(s)	2308
PspGI	CCWGG	8 cut(s)	9, 36, 74, 828, 1435, 1486, 2109, 2617
PspLI	CGTACG	1 cut(s)	1171
PspN4I	GGNNCC	7 cut(s)	48, 1230, 1395, 1794, 2799, 2800, 2856
PspOMI	GGGCCC	1 cut(s)	2798
PspPI	GGNCC	7 cut(s)	7, 1362, 1433, 1766, 2644, 2798, 2799
PspXI	VCTCGAGB	1 cut(s)	2628
PstI	CTGCAG	1 cut(s)	2713
PstNI	CAGNNNCTG	1 cut(s)	2849
PsuI	RGATCY	3 cut(s)	673, 1609, 1687
PvuI	CGATCG	1 cut(s)	1101
PvuII	CAGCTG	2 cut(s)	391, 2836
RsaI	GTAC	8 cut(s)	317, 810, 1173, 1267, 1280, 1380, 1699, 1884
RsaNI	GTAC	8 cut(s)	316, 809, 1172, 1266, 1279, 1379, 1698, 1883
RseI	CAYNNNNRTG	2 cut(s)	222, 1307
SacI	GAGCTC	2 cut(s)	18, 1635
SalI	GTCGAC	1 cut(s)	1049
SaqAI	TTAA	5 cut(s)	618, 1025, 2124, 2205, 2273
SatI	GCNGC	4 cut(s)	389, 392, 1165, 1671
Sau3AI	GATC	9 cut(s)	63, 673, 778, 1098, 1159, 1256, 1501, 1609, 1687
Sau96I	GGNCC	7 cut(s)	7, 1362, 1433, 1766, 2644, 2798, 2799
ScaI	AGTACT	2 cut(s)	810, 1380
SchI	GAGTC	5 cut(s)	50, 2054, 2150, 2620, 2855
ScrFI	CCNGG	8 cut(s)	11, 38, 76, 830, 1437, 1488, 2111, 2619
SduI	GDGCHC	6 cut(s)	18, 51, 1635, 1795, 2309, 2802
SfaNI	GCATC	6 cut(s)	549, 572, 892, 998, 2318, 2500
SfcI	CTRYAG	3 cut(s)	1366, 2672, 2709
Sfr274I	CTCGAG	1 cut(s)	2628
SinI	GGWCC	4 cut(s)	7, 1433, 1766, 2644
SlaI	CTCGAG	1 cut(s)	2628
SmiMI	CAYNNNNRTG	2 cut(s)	222, 1307
SmlI	CTYRAG	4 cut(s)	637, 1751, 1886, 2628
SmoI	CTYRAG	4 cut(s)	637, 1751, 1886, 2628
Sse9I	AATT	9 cut(s)	485, 753, 1026, 1132, 1497, 1640, 2251, 2416, 2428
SseBI	AGGCCT	1 cut(s)	1126
SsiI	CCGC	5 cut(s)	5, 84, 149, 1322, 1707
SspI	AATATT	1 cut(s)	2121
SspMI	CTAG	5 cut(s)	71, 602, 936, 1079, 2777
SstI	GAGCTC	2 cut(s)	18, 1635
StuI	AGGCCT	1 cut(s)	1126
StyD4I	CCNGG	8 cut(s)	9, 36, 74, 828, 1435, 1486, 2109, 2617
StyI	CCWWGG	7 cut(s)	567, 704, 879, 1191, 1210, 1796, 2071
TaaI	ACNGT	4 cut(s)	221, 1171, 1628, 2638
TaiI	ACGT	3 cut(s)	1015, 1483, 2413
TaqI	TCGA	8 cut(s)	805, 1050, 1101, 1356, 1918, 2058, 2101, 2629
TaqII	GACCGA	1 cut(s)	85
TasI	AATT	9 cut(s)	485, 753, 1026, 1132, 1497, 1640, 2251, 2416, 2428
TatI	WGTACW	6 cut(s)	315, 808, 1265, 1278, 1378, 1882
TfiI	GAWTC	9 cut(s)	368, 710, 950, 1115, 1234, 1540, 2081, 2435, 2443
Tru1I	TTAA	5 cut(s)	618, 1025, 2124, 2205, 2273
Tru9I	TTAA	5 cut(s)	618, 1025, 2124, 2205, 2273
TscAI	CASTG	6 cut(s)	106, 857, 1230, 1266, 1633, 1707
TseFI	GTSAC	6 cut(s)	97, 587, 1345, 2623, 2783, 2803
TseI	GCWGC	4 cut(s)	388, 391, 1164, 1670
Tsp45I	GTSAC	6 cut(s)	97, 587, 1345, 2623, 2783, 2803
TspDTI	ATGAA	9 cut(s)	312, 465, 626, 686, 963, 1226, 1332, 1523, 1964
TspGWI	ACGGA	3 cut(s)	943, 2340, 2802
TspRI	CASTG	6 cut(s)	106, 857, 1230, 1266, 1633, 1707
Van91I	CCANNNNNTGG	2 cut(s)	1565, 1781
VpaK11BI	GGWCC	4 cut(s)	7, 1433, 1766, 2644
XapI	RAATTY	1 cut(s)	1132
XceI	RCATGY	5 cut(s)	164, 412, 998, 1526, 1830
XhoI	CTCGAG	1 cut(s)	2628
XmiI	GTMKAC	2 cut(s)	1050, 1897
XspI	CTAG	5 cut(s)	71, 602, 936, 1079, 2777
ZrmI	AGTACT	2 cut(s)	810, 1380
Zsp2I	ATGCAT	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.