Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003746

Physical Location & Seq

Genomic Coordinates Forward (+)

3919047 .. 3928933

Gene Structure 9887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG058000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2955 bp

ATGGCGGACCAGGAGCTCCATCTGCTCTCAGCTTTCCTGGCTATGGAGCCCACAGACTCTCTGATCGGCCTGGCCAGGGAATGCGGTGGAGGGTCGGTCACTGAGAGAGTTCAGAGGTTTATTTGGGAGCATTGCATAACCAAATATGCGGGGAAACTACATGCGCCTTATCTGAGGAAGTTTCTGAAGAAGCTTATTGCTGAAGTTGAGTTGAACCACGGTGATGTGATTGATGAGTTATACGAACATTATGCACATTACATGACTACTTTGAAGGAGAAAGATTTGGAGAAAGATAATGCAAGGGTCTTCAAGTACATTTCATTTCTTTTTCCTGATGGTTGTCTTGAACTTTCAAGATGTTTGGAATCAAGGAAACTGATGGTGCAGCTGCAATGTTCTCTCAACATGCTTGAAGGAGATACTGGGTGTTCAGTCTGGCCATCAAGTCTTCTTTTGTCAGAGTGCATACTTTCATTTCCAGAATTGTTCTCTAATAAGTCGTGCTTTGAGGTTGGTTCAGGTGTTGGTTTGGTTGGCATCTGTCTTGCCCATGTGAAAGCATCCAAGGTCATACTAAGTGATGGTGACCTGTCAACTCTAGCAAACATGAAGCTTAATCTGGAACTGAACCACTTGAGCGTTGAAACTGATATGTCAGAAACTACTGCAGATCCAAATATGGTAAAATGCATTCATTTGCCATGGGAATCTGTGTCAGAGAAGGAGCTTCAAAACCACAAGCCAGATATAATTTTGGGTGCAGATGTAATATATGATCCCGTATGCCTCCCACATCTTGTTCGGGTACTTACCCTTCTTCTAAACCAGGAAAAACCATATCCTGACCAGTGCAGTAATAATCATCCCGTCTTTTCCTTGGGAAGTAAATGTAGTAGTGATGCTAAAGTCAATGTAACTCATCAAGCAAATGCTAGCAATGGTGATGAATCCGTTGCTTCTCTATGCAAAAGAACAGACAATGGTGCATCACATGTTGGATTGAAGAAACGTCCGACAGCTTTAATTGCTTCTGTCATTCGCAATGTCGACACATTCAATAAGTTTCTCACTTTGCTAGACGAGGCCAACCTTACGATCGAAGACCTAACTGAATCGCATAGGCCTCTAAATTTTCTTCCTTACATGAAGTCATATGATCGCAGCACCGTACGAATGTTTTCCATCTCATGCTCAAATCCCAGTTACTTTATCAAAGTTTTTGAATACTATTCCAAACCCATAAATCAAAGTCACCAACTCACCATGGCAGAGCTGAAGAACCAAGGAGAGGTTGCAGTGGAGCCGATTCATTTATGGGCTACCCCAAGATCACTGAGTACAAGCCTCATGTACTCTTTTGCTCAGAGGGATGACATAGAAGTGCTTGATGAACCGCTCTACGCAACTTTCCTTCGGGTGACAGGTTTCGATAGGCCCTACAGGGAGGAAGTACTTTCCCAAATGGAACCTGATGGAAATAAAGTAGTAAATGAGATCATTCTTGGTCCAGGAAGCAAGAAGTATCGCTTCTGTAAGCATATAGCAAAGCAACGTGTCCCTGGCTTACCAATTGATCTAATGAAGAAAGGAAAGCATGTCATTTTGACGAGGAATCCCCTTGATATATTGCCATCCTTTGGCAAGGTTGTGCCTCCAACCCTTGTTGAGTTAGGCTTCGCAGATCTGGTCTGTATATACAGTGAGCTCTCCCAATTGGGGAAGCCCCCACCTGTCATTGATGCAGCCGAACTTCAAGAAGATCCTGAGCGTACACTGCATGGACTTTGTGAAGACTTGGATATCCCTTTTCAGTCCACAATGCTCAAGTGGGAGGCTGGTCCCAAACCAGTAGATGGCGTTTGGGCTCCATGGTGGTATGAGAGTGTGCATAAATCAACATGCTTTCAGCCAGCAAAAAAATATCCCATGCCATTTCCTTTTCCTCTGTATGATGTACTTGAGCAAAGTCTACCCTTCTACAACTTCCTTCGGCGCCATATGAGTGCATCATGCCTTATGAAGTCTGGTTTGCCTGAACCCGAACTCCCAGTTCCAGAAAATGAGAAGTTACTTGCATGGGTTGGTGATGAGATTGTTCCACGAGAGAGTGCAAAGGTTTCTGTGTTCGACTCGGTTGTCCAAGGTGGTGATTCAGTTTGGGAGGGACTTCGAGTTTACCAGGGGAAAATATTTAAGCTTGAAGAACATTTGGATAGGTTATTTGACTCAGCAAAGGCTTTGGCATTCAACAATGTTCCTACTCGTGAAGAGGTTAAAGAAGCCATATTCAGAACTCTTATTCGGAATGGAATGTTTGACAATTCACACATCCGACTAAGTTTAACTCGTGGCAAAAAGGTTACTTCTGGCATGAGCCCAGCATTCAATCTTTATGGATGCACCTTGATTGTGCTTGCTGAATGGAAACCCCCCGTGTATGACAATACAAAGGGTATAACTCTTGTTACAGCTACAACACGTCGTAATTCACCGAATAATTTGGATTCAAAGATTCACCACAATAACCTGCTCAACAATATCCTTGCAAAGATAGAAGGCAATAATGCAAGCGCTGATGATGCAATCATGCTTGACAAGGATGGTTATGTATCTGAAACAAATGCTACAAACATTTTTTTAGTGAAGAAAGGTCGTGTATTGACACCTCATGCTGATTACTGCCTTCCTGGTGTGACTCGAGCAACTGTTATGGACCTTGTGGTGCAGGAGAAGTTTCCCCTACAGGAGAGAAATATCAGCCTATCAGAGTTCCATACTGCAGATGAGGTATGGACAACCGGAACAATGGGAGAACTCAGTCCTGTTGTGAAGATTGATGGGCGTCTAGTTGGTGACGGAAAAGTGGGGCCCGTGACCCGAAGATTGCAAAATGCTTACAAACAGCTGACAGCAGAGTCTGGGGTGCCAATACCAACCTATCATGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_4 Methyltransf_16

Protein Analysis

984

Amino Acids

110.35

Weight (kDa)

5.94

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_16	PF10294	136 - 278	2.9e-18	Lysine methyltransferase
Sulfotransfer_5	PF19798	439 - 665	1.2e-44	Sulfotransferase domain
Aminotran_4	PF01063	720 - 946	5.3e-49	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05190 AT3G05190 AT3G05190 AT5G27410 AT5G27410 AT5G27410 AT5G27410
fragaria_vesca	FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350
malus_domestica	MD04G1209000.v1.1 MD12G1223500.v1.1 MD12G1223700.v1.1
prunus_persica	Prupe.6G330000_v2.0.a1 Prupe.6G330000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454121
rosa_laevigata	RLG00000025481
rosa_multiflora	Rmu_co8200578.1_g000001 Rmu_co8412533.1_g000001 Rmu_sc0018584.1_g000004 Rmu_sc0024384.1_g000001 Rmu_sc0026189.1_g000001
rosa_roxburghii	Rroxscaffold_165G00436900
rosa_rugosa	Rorug02G0653400 Rorug02G0653500
rosa_samantha	Rh3AG056100 Rh3BG057500 Rh3CG056800 Rh3DG058000
rosa_wichuraiana	Rw3G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	2138, 2917
Acc36I	ACCTGC	1 cut(s)	2538
AccB1I	GGYRCC	2 cut(s)	1995, 2926
AccB7I	CCANNNNNTGG	2 cut(s)	1640, 1856
AccBSI	CCGCTC	1 cut(s)	1399
AccI	GTMKAC	2 cut(s)	1050, 1972
AciI	CCGC	4 cut(s)	5, 84, 149, 1397
AclWI	GGATC	3 cut(s)	668, 773, 1757
AcoI	YGGCCR	2 cut(s)	72, 440
AcsI	RAATTY	1 cut(s)	1132
AcuI	CTGAAG	3 cut(s)	206, 222, 1298
AcyI	GRCGYC	2 cut(s)	1996, 2845
AfaI	GTAC	8 cut(s)	317, 810, 1173, 1342, 1355, 1455, 1774, 1959
AfeI	AGCGCT	1 cut(s)	2575
AfiI	CCNNNNNNNGG	6 cut(s)	43, 76, 1291, 1640, 1719, 1856
AflIII	ACRYGT	3 cut(s)	994, 1555, 2480
AjiI	CACGTC	1 cut(s)	2483
AjnI	CCWGG	9 cut(s)	9, 36, 69, 74, 828, 1510, 1561, 2181, 2689
AloI	GAACNNNNNNTCC	2 cut(s)	2031, 2063
Alw21I	GWGCWC	2 cut(s)	18, 1710
AlwI	GGATC	3 cut(s)	668, 773, 1757
AlwNI	CAGNNNCTG	1 cut(s)	2921
Ama87I	CYCGRG	1 cut(s)	2700
Aor51HI	AGCGCT	1 cut(s)	2575
AoxI	GGCC	7 cut(s)	67, 72, 440, 1086, 1124, 1436, 2870
ApaI	GGGCCC	1 cut(s)	2874
ApeKI	GCWGC	4 cut(s)	388, 391, 1164, 1745
ApoI	RAATTY	1 cut(s)	1132
Asp700I	GAANNNNTTC	1 cut(s)	1180
AspLEI	GCGC	3 cut(s)	166, 1998, 2576
AspS9I	GGNCC	7 cut(s)	7, 1437, 1508, 1841, 2716, 2870, 2871
AsuNHI	GCTAGC	1 cut(s)	935
AvaI	CYCGRG	1 cut(s)	2700
AvaII	GGWCC	4 cut(s)	7, 1508, 1841, 2716
BaeGI	GKGCMC	1 cut(s)	2874
BalI	TGGCCA	2 cut(s)	74, 442
BanI	GGYRCC	2 cut(s)	1995, 2926
BanII	GRGCYC	6 cut(s)	18, 51, 1710, 1870, 2381, 2874
BarI	GAAGNNNNNNTAC	2 cut(s)	801, 833
BauI	CACGAG	3 cut(s)	2103, 2265, 2349
BbsI	GAAGAC	4 cut(s)	301, 443, 1110, 1800
Bbv12I	GWGCWC	2 cut(s)	18, 1710
BbvI	GCAGC	4 cut(s)	378, 400, 1176, 1757
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	9 cut(s)	11, 38, 71, 76, 830, 1512, 1563, 2183, 2691
BfaI	CTAG	4 cut(s)	602, 936, 1079, 2849
BfmI	CTRYAG	4 cut(s)	669, 1441, 2744, 2781
BfoI	RGCGCY	2 cut(s)	1999, 2577
BfuAI	ACCTGC	1 cut(s)	2538
BglII	AGATCT	1 cut(s)	1684
BisI	GCNGC	4 cut(s)	389, 392, 1165, 1746
BlsI	GCNGC	4 cut(s)	390, 393, 1166, 1747
BmcAI	AGTACT	1 cut(s)	1455
Bme1390I	CCNGG	9 cut(s)	11, 38, 71, 76, 830, 1512, 1563, 2183, 2691
Bme18I	GGWCC	4 cut(s)	7, 1508, 1841, 2716
BmeT110I	CYCGRG	1 cut(s)	2700
BmgBI	CACGTC	1 cut(s)	2483
BmgT120I	GGNCC	7 cut(s)	7, 1437, 1508, 1841, 2716, 2870, 2871
BmiI	GGNNCC	9 cut(s)	48, 1305, 1470, 1843, 1869, 1997, 2871, 2872, 2928
BmrFI	CCNGG	9 cut(s)	11, 38, 71, 76, 830, 1512, 1563, 2183, 2691
BmrI	ACTGGG	3 cut(s)	435, 1197, 2045
BmsI	GCATC	8 cut(s)	549, 572, 892, 998, 1732, 2018, 2390, 2572
BmtI	GCTAGC	1 cut(s)	939
BmuI	ACTGGG	3 cut(s)	435, 1197, 2045
BpiI	GAAGAC	4 cut(s)	301, 443, 1110, 1800
Bpu10I	CCTNAGC	1 cut(s)	1767
BpuEI	CTTGAG	3 cut(s)	658, 1811, 1982
BsaHI	GRCGYC	2 cut(s)	1996, 2845
BsaWI	WCCGGW	1 cut(s)	2801
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 2031, 2061
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 76, 1291, 1640, 1719, 1856
Bse1I	ACTGG	5 cut(s)	430, 850, 1203, 1850, 2051
Bse3DI	GCAATG	4 cut(s)	130, 401, 946, 1051
BseBI	CCWGG	9 cut(s)	11, 38, 71, 76, 830, 1512, 1563, 2183, 2691
BseGI	GGATG	7 cut(s)	563, 865, 1378, 1634, 2331, 2405, 2608
BseLI	CCNNNNNNNGG	6 cut(s)	43, 76, 1291, 1640, 1719, 1856
BseMI	GCAATG	4 cut(s)	130, 401, 946, 1051
BseMII	CTCAG	8 cut(s)	42, 93, 164, 1328, 1379, 1758, 2244, 2833
BseNI	ACTGG	5 cut(s)	430, 850, 1203, 1850, 2051
BseSI	GKGCMC	1 cut(s)	2874
BseXI	GCAGC	4 cut(s)	378, 400, 1176, 1757
BseYI	CCCAGC	1 cut(s)	2380
BsgI	GTGCAG	4 cut(s)	407, 783, 874, 2747
Bsh1285I	CGRYCG	1 cut(s)	1101
BshFI	GGCC	7 cut(s)	69, 74, 442, 1088, 1126, 1438, 2872
BshNI	GGYRCC	2 cut(s)	1995, 2926
BsiEI	CGRYCG	1 cut(s)	1101
BsiHKAI	GWGCWC	2 cut(s)	18, 1710
BsiHKCI	CYCGRG	1 cut(s)	2700
BsiSI	CCGG	1 cut(s)	2802
BsiWI	CGTACG	1 cut(s)	1171
BslFI	GGGAC	3 cut(s)	1544, 1827, 2181
BslI	CCNNNNNNNGG	6 cut(s)	43, 76, 1291, 1640, 1719, 1856
BsmFI	GGGAC	3 cut(s)	1544, 1827, 2181
BsmI	GAATGC	4 cut(s)	86, 693, 2246, 2384
BsnI	GGCC	7 cut(s)	69, 74, 442, 1088, 1126, 1438, 2872
BsoBI	CYCGRG	1 cut(s)	2700
Bsp120I	GGGCCC	1 cut(s)	2870
Bsp1286I	GDGCHC	6 cut(s)	18, 51, 1710, 1870, 2381, 2874
Bsp19I	CCATGG	3 cut(s)	704, 1266, 1871
BspACI	CCGC	4 cut(s)	5, 84, 149, 1397
BspANI	GGCC	7 cut(s)	69, 74, 442, 1088, 1126, 1438, 2872
BspCNI	CTCAG	8 cut(s)	41, 94, 165, 1329, 1378, 1759, 2243, 2832
BspHI	TCATGA	1 cut(s)	2944
BspLI	GGNNCC	9 cut(s)	48, 1305, 1470, 1843, 1869, 1997, 2871, 2872, 2928
BspMAI	CTGCAG	2 cut(s)	673, 2785
BspMI	ACCTGC	1 cut(s)	2538
BspOI	GCTAGC	1 cut(s)	939
BspPI	GGATC	3 cut(s)	668, 773, 1757
BspT107I	GGYRCC	2 cut(s)	1995, 2926
BsrBI	CCGCTC	1 cut(s)	1399
BsrDI	GCAATG	4 cut(s)	130, 401, 946, 1051
BsrI	ACTGG	5 cut(s)	430, 850, 1203, 1850, 2051
BssNI	GRCGYC	2 cut(s)	1996, 2845
BssSI	CACGAG	3 cut(s)	2103, 2265, 2349
BssT1I	CCWWGG	7 cut(s)	567, 704, 879, 1266, 1285, 1871, 2143
Bst2BI	CACGAG	3 cut(s)	2103, 2265, 2349
Bst2UI	CCWGG	9 cut(s)	11, 38, 71, 76, 830, 1512, 1563, 2183, 2691
Bst4CI	ACNGT	4 cut(s)	221, 1171, 1703, 2710
Bst6I	CTCTTC	1 cut(s)	2265
BstACI	GRCGYC	2 cut(s)	1996, 2845
BstC8I	GCNNGC	4 cut(s)	937, 1914, 2418, 2572
BstDSI	CCRYGG	4 cut(s)	217, 704, 1266, 1871
BstEII	GGTNACC	1 cut(s)	587
BstF5I	GGATG	7 cut(s)	563, 865, 1378, 1634, 2331, 2405, 2608
BstH2I	RGCGCY	2 cut(s)	1999, 2577
BstHHI	GCGC	3 cut(s)	166, 1998, 2576
BstMCI	CGRYCG	1 cut(s)	1101
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 38, 1028, 1777, 2582
BstNI	CCWGG	9 cut(s)	11, 38, 71, 76, 830, 1512, 1563, 2183, 2691
BstNSI	RCATGY	5 cut(s)	164, 412, 998, 1601, 1905
BstPI	GGTNACC	1 cut(s)	587
BstSCI	CCNGG	9 cut(s)	9, 36, 69, 74, 828, 1510, 1561, 2181, 2689
BstSFI	CTRYAG	4 cut(s)	669, 1441, 2744, 2781
BstSLI	GKGCMC	1 cut(s)	2874
BstV1I	GCAGC	4 cut(s)	378, 400, 1176, 1757
BstV2I	GAAGAC	4 cut(s)	301, 443, 1110, 1800
BstX2I	RGATCY	3 cut(s)	673, 1684, 1762
BstYI	RGATCY	3 cut(s)	673, 1684, 1762
BsuRI	GGCC	7 cut(s)	69, 74, 442, 1088, 1126, 1438, 2872
BtgI	CCRYGG	4 cut(s)	217, 704, 1266, 1871
BtrI	CACGTC	1 cut(s)	2483
BtsCI	GGATG	7 cut(s)	563, 865, 1378, 1634, 2331, 2405, 2608
BtsI	GCAGTG	2 cut(s)	1305, 1775
BtsIMutI	CAGTG	6 cut(s)	99, 857, 1305, 1334, 1708, 1775
BveI	ACCTGC	1 cut(s)	2538
Cac8I	GCNNGC	4 cut(s)	937, 1914, 2418, 2572
CaiI	CAGNNNCTG	1 cut(s)	2921
CciI	TCATGA	1 cut(s)	2944
CfoI	GCGC	3 cut(s)	166, 1998, 2576
Cfr13I	GGNCC	7 cut(s)	7, 1437, 1508, 1841, 2716, 2870, 2871
CseI	GACGC	1 cut(s)	2834
Csp6I	GTAC	8 cut(s)	316, 809, 1172, 1341, 1354, 1454, 1773, 1958
CviQI	GTAC	8 cut(s)	316, 809, 1172, 1341, 1354, 1454, 1773, 1958
DinI	GGCGCC	1 cut(s)	1997
DrdI	GACNNNNNNGTC	2 cut(s)	2138, 2917
DseDI	GACNNNNNNGTC	2 cut(s)	2138, 2917
EaeI	YGGCCR	2 cut(s)	72, 440
Eam1104I	CTCTTC	1 cut(s)	2265
EarI	CTCTTC	1 cut(s)	2265
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	16, 1708
Eco130I	CCWWGG	7 cut(s)	567, 704, 879, 1266, 1285, 1871, 2143
Eco147I	AGGCCT	1 cut(s)	1126
Eco24I	GRGCYC	6 cut(s)	18, 51, 1710, 1870, 2381, 2874
Eco32I	GATATC	1 cut(s)	1804
Eco47I	GGWCC	4 cut(s)	7, 1508, 1841, 2716
Eco47III	AGCGCT	1 cut(s)	2575
Eco53kI	GAGCTC	2 cut(s)	16, 1708
Eco57I	CTGAAG	3 cut(s)	206, 222, 1298
Eco88I	CYCGRG	1 cut(s)	2700
Eco91I	GGTNACC	1 cut(s)	587
EcoICRI	GAGCTC	2 cut(s)	16, 1708
EcoO109I	RGGNCCY	2 cut(s)	1437, 2870
EcoO65I	GGTNACC	1 cut(s)	587
EcoRII	CCWGG	9 cut(s)	9, 36, 69, 74, 828, 1510, 1561, 2181, 2689
EcoRV	GATATC	1 cut(s)	1804
EcoT14I	CCWWGG	7 cut(s)	567, 704, 879, 1266, 1285, 1871, 2143
EcoT22I	ATGCAT	1 cut(s)	695
EcoT38I	GRGCYC	6 cut(s)	18, 51, 1710, 1870, 2381, 2874
EgeI	GGCGCC	1 cut(s)	1997
EheI	GGCGCC	1 cut(s)	1997
ErhI	CCWWGG	7 cut(s)	567, 704, 879, 1266, 1285, 1871, 2143
FalI	AAGNNNNNCTT	4 cut(s)	491, 523, 1514, 1546
FaqI	GGGAC	3 cut(s)	1544, 1827, 2181
FauI	CCCGC	1 cut(s)	142
FauNDI	CATATG	2 cut(s)	1156, 2001
FblI	GTMKAC	2 cut(s)	1050, 1972
Fnu4HI	GCNGC	4 cut(s)	389, 392, 1165, 1746
FokI	GGATG	7 cut(s)	550, 852, 1385, 1621, 2318, 2412, 2615
FriOI	GRGCYC	6 cut(s)	18, 51, 1710, 1870, 2381, 2874
Fsp4HI	GCNGC	4 cut(s)	389, 392, 1165, 1746
FspBI	CTAG	4 cut(s)	602, 936, 1079, 2849
GlaI	GCGC	3 cut(s)	165, 1997, 2575
GluI	GCNGC	4 cut(s)	389, 392, 1165, 1746
GsaI	CCCAGC	1 cut(s)	2384
HaeII	RGCGCY	2 cut(s)	1999, 2577
HaeIII	GGCC	7 cut(s)	69, 74, 442, 1088, 1126, 1438, 2872
HapII	CCGG	1 cut(s)	2802
HgaI	GACGC	1 cut(s)	2834
HhaI	GCGC	3 cut(s)	166, 1998, 2576
Hin1I	GRCGYC	2 cut(s)	1996, 2845
Hin6I	GCGC	3 cut(s)	164, 1996, 2574
HinP1I	GCGC	3 cut(s)	164, 1996, 2574
HincII	GTYRAC	2 cut(s)	597, 1051
HindII	GTYRAC	2 cut(s)	597, 1051
HindIII	AAGCTT	3 cut(s)	191, 614, 2198
HpaII	CCGG	1 cut(s)	2802
Hpy166II	GTNNAC	6 cut(s)	597, 1051, 1775, 1818, 1973, 2179
Hpy8I	GTNNAC	6 cut(s)	597, 1051, 1775, 1818, 1973, 2179
Hpy99I	CGWCG	1 cut(s)	2487
HpyAV	CCTTC	9 cut(s)	268, 410, 718, 827, 1424, 1987, 2000, 2552, 2696
HpyCH4III	ACNGT	4 cut(s)	221, 1171, 1703, 2710
HpyCH4IV	ACGT	3 cut(s)	1012, 1555, 2482
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 38, 1028, 1777, 2582
HpySE526I	ACGT	3 cut(s)	1012, 1555, 2482
Hsp92I	GRCGYC	2 cut(s)	1996, 2845
HspAI	GCGC	3 cut(s)	164, 1996, 2574
KasI	GGCGCC	1 cut(s)	1995
LmnI	GCTCC	7 cut(s)	13, 21, 46, 127, 727, 1303, 1873
Lsp1109I	GCAGC	4 cut(s)	378, 400, 1176, 1757
LweI	GCATC	8 cut(s)	549, 572, 892, 998, 1732, 2018, 2390, 2572
MaeI	CTAG	4 cut(s)	602, 936, 1079, 2849
MaeII	ACGT	3 cut(s)	1012, 1555, 2482
MbiI	CCGCTC	1 cut(s)	1399
MfeI	CAATTG	2 cut(s)	1572, 1715
MflI	RGATCY	3 cut(s)	673, 1684, 1762
MhlI	GDGCHC	6 cut(s)	18, 51, 1710, 1870, 2381, 2874
MlsI	TGGCCA	2 cut(s)	74, 442
MluCI	AATT	9 cut(s)	485, 753, 1026, 1132, 1572, 1715, 2323, 2488, 2500
MluNI	TGGCCA	2 cut(s)	74, 442
Mly113I	GGCGCC	1 cut(s)	1996
MlyI	GAGTC	5 cut(s)	50, 2126, 2222, 2692, 2927
MmeI	TCCRAC	4 cut(s)	979, 1040, 1682, 2359
Mox20I	TGGCCA	2 cut(s)	74, 442
Mph1103I	ATGCAT	1 cut(s)	695
MroXI	GAANNNNTTC	1 cut(s)	1180
MscI	TGGCCA	2 cut(s)	74, 442
MseI	TTAA	5 cut(s)	618, 1025, 2196, 2277, 2345
MslI	CAYNNNNRTG	3 cut(s)	222, 1382, 2004
Msp20I	TGGCCA	2 cut(s)	74, 442
MspA1I	CMGCKG	2 cut(s)	391, 2908
MspI	CCGG	1 cut(s)	2802
MspR9I	CCNGG	9 cut(s)	11, 38, 71, 76, 830, 1512, 1563, 2183, 2691
MunI	CAATTG	2 cut(s)	1572, 1715
Mva1269I	GAATGC	4 cut(s)	86, 693, 2246, 2384
MvaI	CCWGG	9 cut(s)	11, 38, 71, 76, 830, 1512, 1563, 2183, 2691
MwoI	GCNNNNNNNGC	5 cut(s)	22, 38, 1028, 1777, 2582
NarI	GGCGCC	1 cut(s)	1996
NcoI	CCATGG	3 cut(s)	704, 1266, 1871
NdeI	CATATG	2 cut(s)	1156, 2001
NheI	GCTAGC	1 cut(s)	935
NlaIV	GGNNCC	9 cut(s)	48, 1305, 1470, 1843, 1869, 1997, 2871, 2872, 2928
NmuCI	GTSAC	7 cut(s)	97, 587, 1253, 1420, 2695, 2855, 2875
NsiI	ATGCAT	1 cut(s)	695
NspI	RCATGY	5 cut(s)	164, 412, 998, 1601, 1905
PaeR7I	CTCGAG	1 cut(s)	2700
PagI	TCATGA	1 cut(s)	2944
PceI	AGGCCT	1 cut(s)	1126
PciI	ACATGT	1 cut(s)	994
PctI	GAATGC	4 cut(s)	86, 693, 2246, 2384
PdmI	GAANNNNTTC	1 cut(s)	1180
PfeI	GAWTC	9 cut(s)	368, 710, 950, 1115, 1309, 1615, 2153, 2507, 2515
Pfl23II	CGTACG	1 cut(s)	1171
PflMI	CCANNNNNTGG	2 cut(s)	1640, 1856
PfoI	TCCNGGA	1 cut(s)	1510
PkrI	GCNGC	4 cut(s)	390, 393, 1166, 1747
Ple19I	CGATCG	1 cut(s)	1101
PleI	GAGTC	5 cut(s)	50, 2126, 2222, 2692, 2926
PluTI	GGCGCC	1 cut(s)	1999
PpsI	GAGTC	5 cut(s)	50, 2126, 2222, 2692, 2926
PscI	ACATGT	1 cut(s)	994
Psp124BI	GAGCTC	2 cut(s)	18, 1710
Psp6I	CCWGG	9 cut(s)	9, 36, 69, 74, 828, 1510, 1561, 2181, 2689
PspEI	GGTNACC	1 cut(s)	587
PspFI	CCCAGC	1 cut(s)	2380
PspGI	CCWGG	9 cut(s)	9, 36, 69, 74, 828, 1510, 1561, 2181, 2689
PspLI	CGTACG	1 cut(s)	1171
PspN4I	GGNNCC	9 cut(s)	48, 1305, 1470, 1843, 1869, 1997, 2871, 2872, 2928
PspOMI	GGGCCC	1 cut(s)	2870
PspPI	GGNCC	7 cut(s)	7, 1437, 1508, 1841, 2716, 2870, 2871
PspXI	VCTCGAGB	1 cut(s)	2700
PstI	CTGCAG	2 cut(s)	673, 2785
PstNI	CAGNNNCTG	1 cut(s)	2921
PsuI	RGATCY	3 cut(s)	673, 1684, 1762
PvuI	CGATCG	1 cut(s)	1101
PvuII	CAGCTG	2 cut(s)	391, 2908
RsaI	GTAC	8 cut(s)	317, 810, 1173, 1342, 1355, 1455, 1774, 1959
RsaNI	GTAC	8 cut(s)	316, 809, 1172, 1341, 1354, 1454, 1773, 1958
RseI	CAYNNNNRTG	3 cut(s)	222, 1382, 2004
SacI	GAGCTC	2 cut(s)	18, 1710
SalI	GTCGAC	1 cut(s)	1049
SaqAI	TTAA	5 cut(s)	618, 1025, 2196, 2277, 2345
SatI	GCNGC	4 cut(s)	389, 392, 1165, 1746
Sau96I	GGNCC	7 cut(s)	7, 1437, 1508, 1841, 2716, 2870, 2871
ScaI	AGTACT	1 cut(s)	1455
SchI	GAGTC	5 cut(s)	50, 2126, 2222, 2692, 2927
ScrFI	CCNGG	9 cut(s)	11, 38, 71, 76, 830, 1512, 1563, 2183, 2691
SduI	GDGCHC	6 cut(s)	18, 51, 1710, 1870, 2381, 2874
SfaNI	GCATC	8 cut(s)	549, 572, 892, 998, 1732, 2018, 2390, 2572
SfcI	CTRYAG	4 cut(s)	669, 1441, 2744, 2781
SfoI	GGCGCC	1 cut(s)	1997
Sfr274I	CTCGAG	1 cut(s)	2700
SinI	GGWCC	4 cut(s)	7, 1508, 1841, 2716
SlaI	CTCGAG	1 cut(s)	2700
SmiMI	CAYNNNNRTG	3 cut(s)	222, 1382, 2004
SmlI	CTYRAG	4 cut(s)	637, 1826, 1961, 2700
SmoI	CTYRAG	4 cut(s)	637, 1826, 1961, 2700
Sse9I	AATT	9 cut(s)	485, 753, 1026, 1132, 1572, 1715, 2323, 2488, 2500
SseBI	AGGCCT	1 cut(s)	1126
SsiI	CCGC	4 cut(s)	5, 84, 149, 1397
SspDI	GGCGCC	1 cut(s)	1995
SspI	AATATT	1 cut(s)	2193
SspMI	CTAG	4 cut(s)	602, 936, 1079, 2849
SstI	GAGCTC	2 cut(s)	18, 1710
StuI	AGGCCT	1 cut(s)	1126
StyD4I	CCNGG	9 cut(s)	9, 36, 69, 74, 828, 1510, 1561, 2181, 2689
StyI	CCWWGG	7 cut(s)	567, 704, 879, 1266, 1285, 1871, 2143
TaaI	ACNGT	4 cut(s)	221, 1171, 1703, 2710
TaiI	ACGT	3 cut(s)	1015, 1558, 2485
TaqI	TCGA	6 cut(s)	1050, 1101, 1431, 2130, 2173, 2701
TaqII	GACCGA	1 cut(s)	85
TasI	AATT	9 cut(s)	485, 753, 1026, 1132, 1572, 1715, 2323, 2488, 2500
TatI	WGTACW	5 cut(s)	315, 1340, 1353, 1453, 1957
TfiI	GAWTC	9 cut(s)	368, 710, 950, 1115, 1309, 1615, 2153, 2507, 2515
Tru1I	TTAA	5 cut(s)	618, 1025, 2196, 2277, 2345
Tru9I	TTAA	5 cut(s)	618, 1025, 2196, 2277, 2345
TscAI	CASTG	6 cut(s)	106, 857, 1305, 1341, 1708, 1782
TseFI	GTSAC	7 cut(s)	97, 587, 1253, 1420, 2695, 2855, 2875
TseI	GCWGC	4 cut(s)	388, 391, 1164, 1745
Tsp45I	GTSAC	7 cut(s)	97, 587, 1253, 1420, 2695, 2855, 2875
TspGWI	ACGGA	2 cut(s)	943, 2874
TspRI	CASTG	6 cut(s)	106, 857, 1305, 1341, 1708, 1782
Van91I	CCANNNNNTGG	2 cut(s)	1640, 1856
VpaK11BI	GGWCC	4 cut(s)	7, 1508, 1841, 2716
XapI	RAATTY	1 cut(s)	1132
XceI	RCATGY	5 cut(s)	164, 412, 998, 1601, 1905
XhoI	CTCGAG	1 cut(s)	2700
XmiI	GTMKAC	2 cut(s)	1050, 1972
XmnI	GAANNNNTTC	1 cut(s)	1180
XspI	CTAG	4 cut(s)	602, 936, 1079, 2849
ZrmI	AGTACT	1 cut(s)	1455
Zsp2I	ATGCAT	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.