Rmu_co8412533.1_g000001

branched-chain-amino-acid aminotransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8412533.1
OG0003746
Physical Location & Seq
Reverse (-)
1 .. 1249
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8412533.1_g000001.1.cds

Sequence Viewer

Length: 336 bp
atgcttgacaaggatggttatgtatctgagacaaatgctacaaacatttttttagtgaagaaaggtcgtgtattgacacctcatgctgattactgccttcctggtgtgactcgagcaactgttatggaccttgtggtgcaggagaagtttcccctacaggagagaaatatcagcctatcagagttccatactgcagatgaggtatggacaaccggaacaatgggagaactcagtcctgttgtgaagattgatgggcgtctagttggtgacggaaaagtggggcccgtgacccgaagattgcaaaatgcttacaaacagctgacagcagagtctggg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_4 Methyltransf_16

Protein Analysis

112

Amino Acids

12.32

Weight (kDa)

6.08

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 328
AcyI GRCGYC 1 cut(s) 256
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 23
AlwNI CAGNNNCTG 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 1 cut(s) 281
ApaI GGGCCC 1 cut(s) 285
AspS9I GGNCC 3 cut(s) 127, 281, 282
AsuHPI GGTGA 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 285
BanII GRGCYC 1 cut(s) 285
BccI CCATC 2 cut(s) 8, 245
BciT130I CCWGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 2 cut(s) 155, 192
Bme1390I CCNGG 1 cut(s) 102
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 3 cut(s) 127, 281, 282
BmiI GGNNCC 2 cut(s) 282, 283
BmrFI CCNGG 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 256
BsaWI WCCGGW 1 cut(s) 212
BseBI CCWGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 18, 244
BseSI GKGCMC 1 cut(s) 285
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 1 cut(s) 283
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 23
BsnI GGCC 1 cut(s) 283
BsoBI CYCGRG 1 cut(s) 111
Bsp120I GGGCCC 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 285
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 2 cut(s) 19, 243
BspLI GGNNCC 2 cut(s) 282, 283
BspMAI CTGCAG 1 cut(s) 196
BssNI GRCGYC 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 256
BstDEI CTNAG 2 cut(s) 27, 230
BstF5I GGATG 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 2 cut(s) 155, 192
BstSLI GKGCMC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 332
Cfr13I GGNCC 3 cut(s) 127, 281, 282
CseI GACGC 1 cut(s) 245
CviAII CATG 1 cut(s) 83
CviJI RGCY 3 cut(s) 174, 283, 319
CviKI_1 RGCY 3 cut(s) 174, 283, 319
DdeI CTNAG 2 cut(s) 27, 230
DrdI GACNNNNNNGTC 1 cut(s) 328
DseDI GACNNNNNNGTC 1 cut(s) 328
Eco24I GRGCYC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 127
Eco88I CYCGRG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 285
FaeI CATG 1 cut(s) 86
FaiI YATR 5 cut(s) 21, 84, 125, 189, 205
FatI CATG 1 cut(s) 82
FokI GGATG 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 285
FspBI CTAG 1 cut(s) 260
HaeIII GGCC 1 cut(s) 283
HapII CCGG 1 cut(s) 213
HgaI GACGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 256
Hin1II CATG 1 cut(s) 86
HinfI GANTC 2 cut(s) 109, 329
HpaII CCGG 1 cut(s) 213
HphI GGTGA 1 cut(s) 278
Hpy188I TCNGA 2 cut(s) 28, 181
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 3 cut(s) 139, 194, 301
HpyF3I CTNAG 2 cut(s) 27, 230
Hsp92I GRCGYC 1 cut(s) 256
Hsp92II CATG 1 cut(s) 86
LpnPI CCDG 7 cut(s) 87, 114, 125, 143, 226, 249, 318
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 3 cut(s) 106, 266, 286
MboII GAAGA 3 cut(s) 70, 256, 306
MhlI GDGCHC 1 cut(s) 285
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 2 cut(s) 90, 193
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 2 cut(s) 282, 283
NmuCI GTSAC 3 cut(s) 106, 266, 286
PaeR7I CTCGAG 1 cut(s) 111
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 282, 283
PspOMI GGGCCC 1 cut(s) 281
PspPI GGNCC 3 cut(s) 127, 281, 282
PspXI VCTCGAGB 1 cut(s) 111
PstI CTGCAG 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 319
Sau96I GGNCC 3 cut(s) 127, 281, 282
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 285
SetI ASST 5 cut(s) 67, 82, 132, 204, 321
SfcI CTRYAG 2 cut(s) 155, 192
Sfr274I CTCGAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 112
TseFI GTSAC 3 cut(s) 106, 266, 286
Tsp45I GTSAC 3 cut(s) 106, 266, 286
TspGWI ACGGA 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 127
XhoI CTCGAG 1 cut(s) 111
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.