Rmu_co8200578.1_g000001

branched-chain-amino-acid aminotransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8200578.1
OG0003746
Physical Location & Seq
Forward (+)
1 .. 711
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8200578.1_g000001.1.cds

Sequence Viewer

Length: 404 bp
gtgggaggctggtccgaaaccagtagatggcatttgggctccatggtggtatgagagtgtgcataaatcaacatgctttcagccagcaaaaaaatatcccatgccatttccttttcctctgtatgatgtacttgagcaaagtctacccttctacaacttccttcgacgccatatgaggcagacatcatgccttatgaagtctggtttgcctgaacccgaactcccagttccagaaaatgagaagttacttgcatgggttggtgatgagattgttccacgagagagtgcaaaggtttctgtgttcgactcggttgtccaaggtggtgattcagtttgggagggacttcgagtttaccaggggaaaatatttaagcttgaagaacatttggataggtcagtgaaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_4 Methyltransf_16

Protein Analysis

134

Amino Acids

15.55

Weight (kDa)

5.94

Isoelectric Point (pI)

65.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 312
AccB7I CCANNNNNTGG 1 cut(s) 27
AccI GTMKAC 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 1 cut(s) 378
AjnI CCWGG 1 cut(s) 355
AloI GAACNNNNNNTCC 2 cut(s) 205, 237
AluBI AGCT 1 cut(s) 374
AluI AGCT 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 273, 336
AvaII GGWCC 1 cut(s) 12
BanII GRGCYC 1 cut(s) 41
BauI CACGAG 1 cut(s) 277
BccI CCATC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 357
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 357
BmrI ACTGGG 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 42, 317, 356
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse1I ACTGG 2 cut(s) 21, 225
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 3 cut(s) 42, 317, 356
BseLI CCNNNNNNNGG 1 cut(s) 27
BseNI ACTGG 2 cut(s) 21, 225
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 41
Bsp19I CCATGG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 40
BsrI ACTGG 2 cut(s) 21, 225
BssECI CCNNGG 3 cut(s) 42, 317, 356
BssNI GRCGYC 1 cut(s) 167
BssSI CACGAG 1 cut(s) 277
BssT1I CCWWGG 2 cut(s) 42, 317
Bst2BI CACGAG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 357
BstACI GRCGYC 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 85
BstDSI CCRYGG 1 cut(s) 42
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 355
BtgI CCRYGG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 12
CseI GACGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 129
CviAII CATG 5 cut(s) 43, 73, 101, 187, 253
CviJI RGCY 4 cut(s) 9, 39, 83, 374
CviKI_1 RGCY 4 cut(s) 9, 39, 83, 374
CviQI GTAC 1 cut(s) 129
DrdI GACNNNNNNGTC 1 cut(s) 312
DseDI GACNNNNNNGTC 1 cut(s) 312
Eco130I CCWWGG 2 cut(s) 42, 317
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 355
EcoT14I CCWWGG 2 cut(s) 42, 317
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 2 cut(s) 42, 317
FaeI CATG 5 cut(s) 46, 76, 104, 190, 256
FaqI GGGAC 1 cut(s) 355
FatI CATG 5 cut(s) 42, 72, 100, 186, 252
FauNDI CATATG 1 cut(s) 172
FblI GTMKAC 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 41
HgaI GACGC 1 cut(s) 175
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 5 cut(s) 46, 76, 104, 190, 256
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 2 cut(s) 306, 327
HphI GGTGA 2 cut(s) 273, 336
Hpy166II GTNNAC 2 cut(s) 144, 353
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 231
Hpy8I GTNNAC 2 cut(s) 144, 353
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 2 cut(s) 158, 171
HpyCH4V TGCA 3 cut(s) 62, 252, 288
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 5 cut(s) 46, 76, 104, 190, 256
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 8 cut(s) 34, 97, 187, 223, 238, 244, 342, 369
MaeIII GTNAC 1 cut(s) 244
MboII GAAGA 1 cut(s) 390
MhlI GDGCHC 1 cut(s) 41
MlyI GAGTC 1 cut(s) 300
MnlI CCTC 3 cut(s) 127, 169, 332
MseI TTAA 1 cut(s) 370
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
NcoI CCATGG 1 cut(s) 42
NdeI CATATG 1 cut(s) 172
NlaIII CATG 5 cut(s) 46, 76, 104, 190, 256
NlaIV GGNNCC 1 cut(s) 40
NspI RCATGY 1 cut(s) 76
PfeI GAWTC 1 cut(s) 327
PflMI CCANNNNNTGG 1 cut(s) 27
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 1 cut(s) 12
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SaqAI TTAA 1 cut(s) 370
Sau96I GGNCC 1 cut(s) 12
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 1 cut(s) 41
SetI ASST 4 cut(s) 295, 323, 376, 396
SinI GGWCC 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
SspI AATATT 1 cut(s) 367
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 2 cut(s) 42, 317
TaqI TCGA 3 cut(s) 164, 304, 347
TatI WGTACW 1 cut(s) 128
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TscAI CASTG 1 cut(s) 403
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 1 cut(s) 403
Van91I CCANNNNNTGG 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 12
XceI RCATGY 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.