Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026189.1

Orthogroup ID

OG0003746

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 6286

Gene Structure 6286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026189.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atggcagagctgaagaaccaaggagaggttgcagtggagccgattcatttatgggctaccccaagatcactgagtacaagcctcatgtactcttttgctcagagggatgacatagaagtgcttgatgaaccgctctacgcaactttccttcgggtgacaggtttcgataggccctacagggaggaagtactttcccaaatggaacctgatggaaataaagtcgtaaatgatatcattcttggtccaggaagcaagaagtatcgcttctgtaagcatatagcaaagcaacgtgtccctggcttaccaattgatctaatgaagaaaggaaagcatgtcattttgacgaggaatccccttgatatattgccatcctttggcaaggttgtgcctccaacccttgttgagttaggtttcgcagatctggtctgtatatacagtgagctctcccaattggggaaacccccacctgtcattgttgcagccgaacttcaagaagatcctgagcgtacactgcgcggactttgtgaagacttggatatcccttttcagtccacaatgctcaagtgggaggctggtccgaaaccagtagatggcatttgggctccatggtggtatgagagtgtgcataaatcaacatgctttcagccagcaaaaaaatatcccatgccatttccttttcctctgtatgatgtacttgagcaaagtctacccttctacaacttccttcgacgccatatgaggcagacatcatgccttatgaagtctggtttgcctgaacccgaactcccagttccagaaaatgagaagttacttgcatgggttggtgatgagattgttccacgagagagtgcaaaggtttctgtgttcgactcggttgtccaaggtggtgattcagtttgggagggacttcgagtatggacaaccggaacaatgggagaactcagtcctgttgtgaagattgatgggcgtctagttggtgacggaaaagtggggcccgtgacccgaagattgcaaaatgcttacaaacagctgacagcagagtctggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_4 Methyltransf_16

Protein Analysis

349

Amino Acids

39.24

Weight (kDa)

5.71

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05190 AT3G05190 AT3G05190 AT5G27410 AT5G27410 AT5G27410 AT5G27410
fragaria_vesca	FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350
malus_domestica	MD04G1209000.v1.1 MD12G1223500.v1.1 MD12G1223700.v1.1
prunus_persica	Prupe.6G330000_v2.0.a1 Prupe.6G330000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454121
rosa_laevigata	RLG00000025481
rosa_multiflora	Rmu_co8200578.1_g000001 Rmu_co8412533.1_g000001 Rmu_sc0018584.1_g000004 Rmu_sc0024384.1_g000001 Rmu_sc0026189.1_g000001
rosa_roxburghii	Rroxscaffold_165G00436900
rosa_rugosa	Rorug02G0653400 Rorug02G0653500
rosa_samantha	Rh3AG056100 Rh3BG057500 Rh3CG056800 Rh3DG058000
rosa_wichuraiana	Rw3G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	875, 1039
AccB7I	CCANNNNNTGG	2 cut(s)	374, 590
AccBSI	CCGCTC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	706
AccII	CGCG	1 cut(s)	516
AciI	CCGC	2 cut(s)	131, 516
AclWI	GGATC	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	32
AcyI	GRCGYC	2 cut(s)	730, 967
AfaI	GTAC	5 cut(s)	76, 89, 189, 508, 693
AfiI	CCNNNNNNNGG	4 cut(s)	25, 374, 453, 590
AflIII	ACRYGT	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	491
AjnI	CCWGG	2 cut(s)	244, 295
AloI	GAACNNNNNNTCC	2 cut(s)	768, 800
AluBI	AGCT	3 cut(s)	10, 442, 1030
AluI	AGCT	3 cut(s)	10, 442, 1030
Alw21I	GWGCWC	1 cut(s)	444
AlwI	GGATC	1 cut(s)	491
AlwNI	CAGNNNCTG	1 cut(s)	1043
AoxI	GGCC	2 cut(s)	170, 992
ApaI	GGGCCC	1 cut(s)	996
ApeKI	GCWGC	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	5 cut(s)	171, 242, 575, 992, 993
AsuHPI	GGTGA	4 cut(s)	166, 836, 899, 989
AvaII	GGWCC	2 cut(s)	242, 575
BaeGI	GKGCMC	1 cut(s)	996
BanII	GRGCYC	3 cut(s)	444, 604, 996
BauI	CACGAG	1 cut(s)	840
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	4 cut(s)	203, 376, 584, 956
BciT130I	CCWGG	2 cut(s)	246, 297
BfaI	CTAG	1 cut(s)	971
BfmI	CTRYAG	1 cut(s)	175
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	1 cut(s)	480
BlsI	GCNGC	1 cut(s)	481
BmcAI	AGTACT	1 cut(s)	189
Bme1390I	CCNGG	2 cut(s)	246, 297
Bme18I	GGWCC	2 cut(s)	242, 575
BmgT120I	GGNCC	5 cut(s)	171, 242, 575, 992, 993
BmiI	GGNNCC	5 cut(s)	39, 204, 603, 993, 994
BmrFI	CCNGG	2 cut(s)	246, 297
BmrI	ACTGGG	1 cut(s)	782
BmuI	ACTGGG	1 cut(s)	782
BpiI	GAAGAC	1 cut(s)	534
Bpu10I	CCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	2 cut(s)	545, 716
BsaHI	GRCGYC	2 cut(s)	730, 967
BsaJI	CCNNGG	4 cut(s)	19, 295, 605, 880
BsaWI	WCCGGW	1 cut(s)	923
BsaXI	ACNNNNNCTCC	2 cut(s)	768, 798
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 374, 453, 590
Bse1I	ACTGG	2 cut(s)	584, 788
BseBI	CCWGG	2 cut(s)	246, 297
BseDI	CCNNGG	4 cut(s)	19, 295, 605, 880
BseGI	GGATG	2 cut(s)	112, 368
BseLI	CCNNNNNNNGG	4 cut(s)	25, 374, 453, 590
BseMII	CTCAG	4 cut(s)	62, 113, 492, 955
BseNI	ACTGG	2 cut(s)	584, 788
BseSI	GKGCMC	1 cut(s)	996
BseXI	GCAGC	1 cut(s)	491
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	2 cut(s)	172, 994
BsiHKAI	GWGCWC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	924
BslFI	GGGAC	2 cut(s)	278, 918
BslI	CCNNNNNNNGG	4 cut(s)	25, 374, 453, 590
BsmFI	GGGAC	2 cut(s)	278, 918
BsnI	GGCC	2 cut(s)	172, 994
Bsp120I	GGGCCC	1 cut(s)	992
Bsp1286I	GDGCHC	3 cut(s)	444, 604, 996
Bsp143I	GATC	4 cut(s)	65, 310, 418, 496
Bsp19I	CCATGG	1 cut(s)	605
BspACI	CCGC	2 cut(s)	131, 516
BspANI	GGCC	2 cut(s)	172, 994
BspCNI	CTCAG	4 cut(s)	63, 112, 493, 954
BspFNI	CGCG	1 cut(s)	516
BspLI	GGNNCC	5 cut(s)	39, 204, 603, 993, 994
BspPI	GGATC	1 cut(s)	491
BsrBI	CCGCTC	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	584, 788
BssECI	CCNNGG	4 cut(s)	19, 295, 605, 880
BssMI	GATC	4 cut(s)	65, 310, 418, 496
BssNI	GRCGYC	2 cut(s)	730, 967
BssSI	CACGAG	1 cut(s)	840
BssT1I	CCWWGG	3 cut(s)	19, 605, 880
Bst2BI	CACGAG	1 cut(s)	840
Bst2UI	CCWGG	2 cut(s)	246, 297
Bst4CI	ACNGT	1 cut(s)	437
BstACI	GRCGYC	2 cut(s)	730, 967
BstC8I	GCNNGC	1 cut(s)	648
BstDEI	CTNAG	4 cut(s)	71, 99, 501, 941
BstDSI	CCRYGG	1 cut(s)	605
BstF5I	GGATG	2 cut(s)	112, 368
BstFNI	CGCG	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	4 cut(s)	68, 313, 421, 499
BstMBI	GATC	4 cut(s)	65, 310, 418, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	511
BstNI	CCWGG	2 cut(s)	246, 297
BstNSI	RCATGY	2 cut(s)	335, 639
BstSCI	CCNGG	2 cut(s)	244, 295
BstSFI	CTRYAG	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	996
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	1 cut(s)	491
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	2 cut(s)	418, 496
BstYI	RGATCY	2 cut(s)	418, 496
BsuRI	GGCC	2 cut(s)	172, 994
BtgI	CCRYGG	1 cut(s)	605
BtsCI	GGATG	2 cut(s)	112, 368
BtsI	GCAGTG	2 cut(s)	39, 509
BtsIMutI	CAGTG	4 cut(s)	39, 68, 442, 509
Cac8I	GCNNGC	1 cut(s)	648
CaiI	CAGNNNCTG	1 cut(s)	1043
CfoI	GCGC	1 cut(s)	516
Cfr13I	GGNCC	5 cut(s)	171, 242, 575, 992, 993
CseI	GACGC	2 cut(s)	738, 956
Csp6I	GTAC	5 cut(s)	75, 88, 188, 507, 692
CviAII	CATG	7 cut(s)	85, 332, 606, 636, 664, 750, 816
CviQI	GTAC	5 cut(s)	75, 88, 188, 507, 692
DdeI	CTNAG	4 cut(s)	71, 99, 501, 941
DpnI	GATC	4 cut(s)	67, 312, 420, 498
DpnII	GATC	4 cut(s)	65, 310, 418, 496
DrdI	GACNNNNNNGTC	2 cut(s)	875, 1039
DseDI	GACNNNNNNGTC	2 cut(s)	875, 1039
Ecl136II	GAGCTC	1 cut(s)	442
Eco130I	CCWWGG	3 cut(s)	19, 605, 880
Eco24I	GRGCYC	3 cut(s)	444, 604, 996
Eco32I	GATATC	2 cut(s)	232, 538
Eco47I	GGWCC	2 cut(s)	242, 575
Eco53kI	GAGCTC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	442
EcoO109I	RGGNCCY	2 cut(s)	171, 992
EcoRII	CCWGG	2 cut(s)	244, 295
EcoRV	GATATC	2 cut(s)	232, 538
EcoT14I	CCWWGG	3 cut(s)	19, 605, 880
EcoT38I	GRGCYC	3 cut(s)	444, 604, 996
ErhI	CCWWGG	3 cut(s)	19, 605, 880
FaeI	CATG	7 cut(s)	88, 335, 609, 639, 667, 753, 819
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	2 cut(s)	278, 918
FatI	CATG	7 cut(s)	84, 331, 605, 635, 663, 749, 815
FauNDI	CATATG	1 cut(s)	735
FblI	GTMKAC	1 cut(s)	706
Fnu4HI	GCNGC	1 cut(s)	480
FokI	GGATG	2 cut(s)	119, 355
FriOI	GRGCYC	3 cut(s)	444, 604, 996
Fsp4HI	GCNGC	1 cut(s)	480
FspBI	CTAG	1 cut(s)	971
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	1 cut(s)	480
HaeIII	GGCC	2 cut(s)	172, 994
HapII	CCGG	1 cut(s)	924
HgaI	GACGC	2 cut(s)	738, 956
HhaI	GCGC	1 cut(s)	516
Hin1I	GRCGYC	2 cut(s)	730, 967
Hin1II	CATG	7 cut(s)	88, 335, 609, 639, 667, 753, 819
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HinfI	GANTC	5 cut(s)	43, 349, 869, 890, 1040
HpaII	CCGG	1 cut(s)	924
HphI	GGTGA	4 cut(s)	166, 836, 899, 989
Hpy166II	GTNNAC	3 cut(s)	509, 552, 707
Hpy188I	TCNGA	2 cut(s)	102, 579
Hpy188III	TCNNGA	3 cut(s)	491, 500, 794
Hpy8I	GTNNAC	3 cut(s)	509, 552, 707
Hpy99I	CGWCG	1 cut(s)	732
HpyAV	CCTTC	3 cut(s)	158, 721, 734
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	6 cut(s)	32, 479, 625, 815, 851, 1012
HpyF10VI	GCNNNNNNNGC	1 cut(s)	511
HpyF3I	CTNAG	4 cut(s)	71, 99, 501, 941
HpySE526I	ACGT	1 cut(s)	289
Hsp92I	GRCGYC	2 cut(s)	730, 967
Hsp92II	CATG	7 cut(s)	88, 335, 609, 639, 667, 753, 819
HspAI	GCGC	1 cut(s)	514
Kzo9I	GATC	4 cut(s)	65, 310, 418, 496
LmnI	GCTCC	2 cut(s)	37, 607
Lsp1109I	GCAGC	1 cut(s)	491
MaeI	CTAG	1 cut(s)	971
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	4 cut(s)	154, 807, 977, 997
MalI	GATC	4 cut(s)	67, 312, 420, 498
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	4 cut(s)	65, 310, 418, 496
MboII	GAAGA	6 cut(s)	25, 331, 506, 539, 967, 1017
MfeI	CAATTG	2 cut(s)	306, 449
MflI	RGATCY	2 cut(s)	418, 496
MhlI	GDGCHC	3 cut(s)	444, 604, 996
MluCI	AATT	2 cut(s)	306, 449
MlyI	GAGTC	1 cut(s)	863
MmeI	TCCRAC	1 cut(s)	416
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	1030
MspI	CCGG	1 cut(s)	924
MspR9I	CCNGG	2 cut(s)	246, 297
MunI	CAATTG	2 cut(s)	306, 449
MvaI	CCWGG	2 cut(s)	246, 297
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	1 cut(s)	511
NcoI	CCATGG	1 cut(s)	605
NdeI	CATATG	1 cut(s)	735
NdeII	GATC	4 cut(s)	65, 310, 418, 496
NlaIII	CATG	7 cut(s)	88, 335, 609, 639, 667, 753, 819
NlaIV	GGNNCC	5 cut(s)	39, 204, 603, 993, 994
NmuCI	GTSAC	3 cut(s)	154, 977, 997
NspI	RCATGY	2 cut(s)	335, 639
PfeI	GAWTC	3 cut(s)	43, 349, 890
PflMI	CCANNNNNTGG	2 cut(s)	374, 590
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	481
PleI	GAGTC	1 cut(s)	863
PpsI	GAGTC	1 cut(s)	863
Psp124BI	GAGCTC	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	244, 295
PspGI	CCWGG	2 cut(s)	244, 295
PspN4I	GGNNCC	5 cut(s)	39, 204, 603, 993, 994
PspOMI	GGGCCC	1 cut(s)	992
PspPI	GGNCC	5 cut(s)	171, 242, 575, 992, 993
PstNI	CAGNNNCTG	1 cut(s)	1043
PsuI	RGATCY	2 cut(s)	418, 496
PvuII	CAGCTG	1 cut(s)	1030
RsaI	GTAC	5 cut(s)	76, 89, 189, 508, 693
RsaNI	GTAC	5 cut(s)	75, 88, 188, 507, 692
RseI	CAYNNNNRTG	1 cut(s)	116
SacI	GAGCTC	1 cut(s)	444
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	4 cut(s)	65, 310, 418, 496
Sau96I	GGNCC	5 cut(s)	171, 242, 575, 992, 993
ScaI	AGTACT	1 cut(s)	189
SchI	GAGTC	1 cut(s)	863
ScrFI	CCNGG	2 cut(s)	246, 297
SduI	GDGCHC	3 cut(s)	444, 604, 996
SfcI	CTRYAG	1 cut(s)	175
SinI	GGWCC	2 cut(s)	242, 575
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	2 cut(s)	560, 695
SmoI	CTYRAG	2 cut(s)	560, 695
Sse9I	AATT	2 cut(s)	306, 449
SsiI	CCGC	2 cut(s)	131, 516
SspMI	CTAG	1 cut(s)	971
SstI	GAGCTC	1 cut(s)	444
StyD4I	CCNGG	2 cut(s)	244, 295
StyI	CCWWGG	3 cut(s)	19, 605, 880
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	4 cut(s)	165, 727, 867, 910
TasI	AATT	2 cut(s)	306, 449
TatI	WGTACW	4 cut(s)	74, 87, 187, 691
TfiI	GAWTC	3 cut(s)	43, 349, 890
TscAI	CASTG	4 cut(s)	39, 75, 442, 516
TseFI	GTSAC	3 cut(s)	154, 977, 997
TseI	GCWGC	1 cut(s)	479
Tsp45I	GTSAC	3 cut(s)	154, 977, 997
TspDTI	ATGAA	4 cut(s)	35, 141, 332, 773
TspGWI	ACGGA	1 cut(s)	996
TspRI	CASTG	4 cut(s)	39, 75, 442, 516
Van91I	CCANNNNNTGG	2 cut(s)	374, 590
VpaK11BI	GGWCC	2 cut(s)	242, 575
XceI	RCATGY	2 cut(s)	335, 639
XmiI	GTMKAC	1 cut(s)	706
XspI	CTAG	1 cut(s)	971
ZrmI	AGTACT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.