Rmu_sc0018584.1_g000004

branched-chain-amino-acid aminotransferase-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018584.1
Physical Location & Seq
Reverse (-)
11606 .. 17108
5503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018584.1_g000004.1.cds

Sequence Viewer

Length: 1455 bp
atggcagagctgaagaaccaaggagaggttgcagtggagccgattcatttatgggctaccccaagatcactgagtacaagcctcatgtactcttttgctcagagggatgacatagaagtgcttgatgaaccgctctacgcaactttccttcgggtgacaggtttcgataggccctacagggaggaagtactttcccaaatggaacctgatggaaataaagtcgtaaatgatatcattcttggtccaggaagcaagaagtatcgcttctgtaagcatatagcaaagcaacgtgtccctggcttaccaattgatctaatgaagaaaggaaagcatgtcattttgacgaggaatccccttgatatattgccatcctttggcaaggttgtgcctccaacccttgttgagttaggtttcgcagatctggtctgtatatacagtgagctctcccaattggggaaacccccacctgtcattgttgcagccgaacttcaagaagatcctgagcgtacactgcgcggactttgtgaagacttggatatcccttttcagtccacaatgctcaagtgggaggctggtccgaaaccagtagatggcatttgggctccatggtggtatgagagtgtgcataaatcaacatgctttcagccagcaaaaaaatatcccatgccatttccttttcctctgtatgatgtacttgagcaaagtctacccttctacaacttccttcgacgccatatgaggcagacatcatgccttatgaagtctggtttgcctgaacccgaactcccagttccagaaaatgagaagttacttgcatgggttggtgatgagattgttccacgagagagtgcaaaggtttctgtgttcgactcggttgtccaaggtggtgattcagtttgggagggacttcgagtttaccaggggaaaatatttaagcttgaagaacatttggataggttatttgactcagcaaaggctttggcattcaacaatgttcctactcgtgaagaggttaaagaagccatattcagaactcttattcggaatggaatgtttgacaattcacacatccgactaagtttaactcgtggcaaaaaggttacttctggcatgagcccagcattcaatctttacggatgcaccttgattgtgcttgctgaatggaaaccccccgtgtatgacaatacaaagggtataactcttgttacagctacaacacgtcgtaattcaccgaataatttggattcaaagattcaccacaataacctgctcaacaatatccttgcaaaggtatggacaaccggaacaatgggagaactcagtcctgttgtgaagattgatgggcgtctagttggtgacggaaaagtggggcccgtgacccgaagattgcaaaatgcttacaaacagctgacagcagagtctggggtgccaataccaacctatcatgaaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

484

Amino Acids

54.59

Weight (kDa)

8.07

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 875, 1417
Acc36I ACCTGC 1 cut(s) 1275
AccB1I GGYRCC 1 cut(s) 1426
AccB7I CCANNNNNTGG 2 cut(s) 374, 590
AccBSI CCGCTC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 706
AccII CGCG 1 cut(s) 516
AciI CCGC 2 cut(s) 131, 516
AclWI GGATC 1 cut(s) 491
AcuI CTGAAG 1 cut(s) 32
AcyI GRCGYC 2 cut(s) 730, 1345
AfaI GTAC 5 cut(s) 76, 89, 189, 508, 693
AfiI CCNNNNNNNGG 5 cut(s) 25, 374, 453, 590, 1288
AflIII ACRYGT 2 cut(s) 289, 1217
AgsI TTSAA 5 cut(s) 491, 941, 988, 1126, 1248
AjiI CACGTC 1 cut(s) 1220
AjnI CCWGG 3 cut(s) 244, 295, 918
AloI GAACNNNNNNTCC 2 cut(s) 768, 800
AluBI AGCT 5 cut(s) 10, 442, 937, 1211, 1408
AluI AGCT 5 cut(s) 10, 442, 937, 1211, 1408
Alw21I GWGCWC 1 cut(s) 444
AlwI GGATC 1 cut(s) 491
AlwNI CAGNNNCTG 1 cut(s) 1421
AoxI GGCC 2 cut(s) 170, 1370
ApaI GGGCCC 1 cut(s) 1374
ApeKI GCWGC 1 cut(s) 479
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 5 cut(s) 171, 242, 575, 1370, 1371
AsuHPI GGTGA 6 cut(s) 166, 836, 899, 1221, 1247, 1367
AvaII GGWCC 2 cut(s) 242, 575
BaeGI GKGCMC 1 cut(s) 1374
BanI GGYRCC 1 cut(s) 1426
BanII GRGCYC 4 cut(s) 444, 604, 1118, 1374
BauI CACGAG 3 cut(s) 840, 1002, 1086
BbsI GAAGAC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 444
BbvI GCAGC 1 cut(s) 491
BccI CCATC 4 cut(s) 203, 376, 584, 1334
BciT130I CCWGG 3 cut(s) 246, 297, 920
BfaI CTAG 1 cut(s) 1349
BfmI CTRYAG 1 cut(s) 175
BfuAI ACCTGC 1 cut(s) 1275
BglII AGATCT 1 cut(s) 418
BisI GCNGC 1 cut(s) 480
BlsI GCNGC 1 cut(s) 481
BmcAI AGTACT 1 cut(s) 189
Bme1390I CCNGG 3 cut(s) 246, 297, 920
Bme18I GGWCC 2 cut(s) 242, 575
BmgBI CACGTC 1 cut(s) 1220
BmgT120I GGNCC 5 cut(s) 171, 242, 575, 1370, 1371
BmiI GGNNCC 6 cut(s) 39, 204, 603, 1371, 1372, 1428
BmrFI CCNGG 3 cut(s) 246, 297, 920
BmrI ACTGGG 1 cut(s) 782
BmsI GCATC 1 cut(s) 1127
BmuI ACTGGG 1 cut(s) 782
BpiI GAAGAC 1 cut(s) 534
Bpu10I CCTNAGC 1 cut(s) 501
BpuEI CTTGAG 2 cut(s) 545, 716
BsaHI GRCGYC 2 cut(s) 730, 1345
BsaJI CCNNGG 5 cut(s) 19, 295, 605, 880, 919
BsaWI WCCGGW 1 cut(s) 1301
BsaXI ACNNNNNCTCC 2 cut(s) 768, 798
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 374, 453, 590, 1288
Bse1I ACTGG 2 cut(s) 584, 788
BseBI CCWGG 3 cut(s) 246, 297, 920
BseDI CCNNGG 5 cut(s) 19, 295, 605, 880, 919
BseGI GGATG 4 cut(s) 112, 368, 1068, 1142
BseLI CCNNNNNNNGG 5 cut(s) 25, 374, 453, 590, 1288
BseMII CTCAG 5 cut(s) 62, 113, 492, 981, 1333
BseNI ACTGG 2 cut(s) 584, 788
BseSI GKGCMC 1 cut(s) 1374
BseXI GCAGC 1 cut(s) 491
BseYI CCCAGC 1 cut(s) 1117
Bsh1236I CGCG 1 cut(s) 516
BshFI GGCC 2 cut(s) 172, 1372
BshNI GGYRCC 1 cut(s) 1426
BsiHKAI GWGCWC 1 cut(s) 444
BsiSI CCGG 1 cut(s) 1302
BslFI GGGAC 2 cut(s) 278, 918
BslI CCNNNNNNNGG 5 cut(s) 25, 374, 453, 590, 1288
BsmFI GGGAC 2 cut(s) 278, 918
BsmI GAATGC 2 cut(s) 983, 1121
BsnI GGCC 2 cut(s) 172, 1372
Bsp120I GGGCCC 1 cut(s) 1370
Bsp1286I GDGCHC 4 cut(s) 444, 604, 1118, 1374
Bsp143I GATC 4 cut(s) 65, 310, 418, 496
Bsp19I CCATGG 1 cut(s) 605
BspACI CCGC 2 cut(s) 131, 516
BspANI GGCC 2 cut(s) 172, 1372
BspCNI CTCAG 5 cut(s) 63, 112, 493, 980, 1332
BspFNI CGCG 1 cut(s) 516
BspHI TCATGA 1 cut(s) 1444
BspLI GGNNCC 6 cut(s) 39, 204, 603, 1371, 1372, 1428
BspMI ACCTGC 1 cut(s) 1275
BspPI GGATC 1 cut(s) 491
BspT107I GGYRCC 1 cut(s) 1426
BsrBI CCGCTC 1 cut(s) 133
BsrI ACTGG 2 cut(s) 584, 788
BssECI CCNNGG 5 cut(s) 19, 295, 605, 880, 919
BssMI GATC 4 cut(s) 65, 310, 418, 496
BssNI GRCGYC 2 cut(s) 730, 1345
BssSI CACGAG 3 cut(s) 840, 1002, 1086
BssT1I CCWWGG 3 cut(s) 19, 605, 880
Bst2BI CACGAG 3 cut(s) 840, 1002, 1086
Bst2UI CCWGG 3 cut(s) 246, 297, 920
Bst4CI ACNGT 1 cut(s) 437
Bst6I CTCTTC 1 cut(s) 1002
BstACI GRCGYC 2 cut(s) 730, 1345
BstC8I GCNNGC 2 cut(s) 648, 1155
BstDEI CTNAG 6 cut(s) 71, 99, 501, 967, 1076, 1319
BstDSI CCRYGG 1 cut(s) 605
BstENI CCTNNNNNAGG 1 cut(s) 1286
BstF5I GGATG 4 cut(s) 112, 368, 1068, 1142
BstFNI CGCG 1 cut(s) 516
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 4 cut(s) 68, 313, 421, 499
BstMBI GATC 4 cut(s) 65, 310, 418, 496
BstMWI GCNNNNNNNGC 1 cut(s) 511
BstNI CCWGG 3 cut(s) 246, 297, 920
BstNSI RCATGY 2 cut(s) 335, 639
BstSCI CCNGG 3 cut(s) 244, 295, 918
BstSFI CTRYAG 1 cut(s) 175
BstSLI GKGCMC 1 cut(s) 1374
BstUI CGCG 1 cut(s) 516
BstV1I GCAGC 1 cut(s) 491
BstV2I GAAGAC 1 cut(s) 534
BstX2I RGATCY 2 cut(s) 418, 496
BstYI RGATCY 2 cut(s) 418, 496
BsuRI GGCC 2 cut(s) 172, 1372
BtgI CCRYGG 1 cut(s) 605
BtrI CACGTC 1 cut(s) 1220
BtsCI GGATG 4 cut(s) 112, 368, 1068, 1142
BtsI GCAGTG 2 cut(s) 39, 509
BtsIMutI CAGTG 4 cut(s) 39, 68, 442, 509
BveI ACCTGC 1 cut(s) 1275
Cac8I GCNNGC 2 cut(s) 648, 1155
CaiI CAGNNNCTG 1 cut(s) 1421
CciI TCATGA 1 cut(s) 1444
CfoI GCGC 1 cut(s) 516
Cfr13I GGNCC 5 cut(s) 171, 242, 575, 1370, 1371
CseI GACGC 2 cut(s) 738, 1334
Csp6I GTAC 5 cut(s) 75, 88, 188, 507, 692
CviAII CATG 9 cut(s) 85, 332, 606, 636, 664, 750, 816, 1111, 1445
CviQI GTAC 5 cut(s) 75, 88, 188, 507, 692
DdeI CTNAG 6 cut(s) 71, 99, 501, 967, 1076, 1319
DpnI GATC 4 cut(s) 67, 312, 420, 498
DpnII GATC 4 cut(s) 65, 310, 418, 496
DrdI GACNNNNNNGTC 2 cut(s) 875, 1417
DseDI GACNNNNNNGTC 2 cut(s) 875, 1417
Eam1104I CTCTTC 1 cut(s) 1002
EarI CTCTTC 1 cut(s) 1002
Ecl136II GAGCTC 1 cut(s) 442
Eco130I CCWWGG 3 cut(s) 19, 605, 880
Eco24I GRGCYC 4 cut(s) 444, 604, 1118, 1374
Eco32I GATATC 2 cut(s) 232, 538
Eco47I GGWCC 2 cut(s) 242, 575
Eco53kI GAGCTC 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 442
EcoNI CCTNNNNNAGG 1 cut(s) 1286
EcoO109I RGGNCCY 2 cut(s) 171, 1370
EcoRII CCWGG 3 cut(s) 244, 295, 918
EcoRV GATATC 2 cut(s) 232, 538
EcoT14I CCWWGG 3 cut(s) 19, 605, 880
EcoT38I GRGCYC 4 cut(s) 444, 604, 1118, 1374
ErhI CCWWGG 3 cut(s) 19, 605, 880
FaeI CATG 9 cut(s) 88, 335, 609, 639, 667, 753, 819, 1114, 1448
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 2 cut(s) 278, 918
FatI CATG 9 cut(s) 84, 331, 605, 635, 663, 749, 815, 1110, 1444
FauNDI CATATG 1 cut(s) 735
FblI GTMKAC 1 cut(s) 706
Fnu4HI GCNGC 1 cut(s) 480
FokI GGATG 4 cut(s) 119, 355, 1055, 1149
FriOI GRGCYC 4 cut(s) 444, 604, 1118, 1374
Fsp4HI GCNGC 1 cut(s) 480
FspBI CTAG 1 cut(s) 1349
GlaI GCGC 1 cut(s) 515
GluI GCNGC 1 cut(s) 480
GsaI CCCAGC 1 cut(s) 1121
HaeIII GGCC 2 cut(s) 172, 1372
HapII CCGG 1 cut(s) 1302
HgaI GACGC 2 cut(s) 738, 1334
HhaI GCGC 1 cut(s) 516
Hin1I GRCGYC 2 cut(s) 730, 1345
Hin1II CATG 9 cut(s) 88, 335, 609, 639, 667, 753, 819, 1114, 1448
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HindIII AAGCTT 1 cut(s) 935
HinfI GANTC 8 cut(s) 43, 349, 869, 890, 965, 1244, 1252, 1418
HpaII CCGG 1 cut(s) 1302
HphI GGTGA 6 cut(s) 166, 836, 899, 1221, 1247, 1367
Hpy166II GTNNAC 4 cut(s) 509, 552, 707, 916
Hpy188I TCNGA 5 cut(s) 102, 579, 1031, 1044, 1073
Hpy188III TCNNGA 5 cut(s) 491, 500, 794, 1004, 1445
Hpy8I GTNNAC 4 cut(s) 509, 552, 707, 916
Hpy99I CGWCG 2 cut(s) 732, 1224
HpyAV CCTTC 3 cut(s) 158, 721, 734
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4IV ACGT 2 cut(s) 289, 1219
HpyCH4V TGCA 8 cut(s) 32, 479, 625, 815, 851, 1140, 1286, 1390
HpyF10VI GCNNNNNNNGC 1 cut(s) 511
HpyF3I CTNAG 6 cut(s) 71, 99, 501, 967, 1076, 1319
HpySE526I ACGT 2 cut(s) 289, 1219
Hsp92I GRCGYC 2 cut(s) 730, 1345
Hsp92II CATG 9 cut(s) 88, 335, 609, 639, 667, 753, 819, 1114, 1448
HspAI GCGC 1 cut(s) 514
Kzo9I GATC 4 cut(s) 65, 310, 418, 496
LmnI GCTCC 2 cut(s) 37, 607
Lsp1109I GCAGC 1 cut(s) 491
LweI GCATC 1 cut(s) 1127
MaeI CTAG 1 cut(s) 1349
MaeII ACGT 2 cut(s) 289, 1219
MaeIII GTNAC 6 cut(s) 154, 807, 1099, 1204, 1355, 1375
MalI GATC 4 cut(s) 67, 312, 420, 498
MbiI CCGCTC 1 cut(s) 133
MboI GATC 4 cut(s) 65, 310, 418, 496
MboII GAAGA 8 cut(s) 25, 331, 506, 539, 953, 1019, 1345, 1395
MfeI CAATTG 2 cut(s) 306, 449
MflI RGATCY 2 cut(s) 418, 496
MhlI GDGCHC 4 cut(s) 444, 604, 1118, 1374
MluCI AATT 5 cut(s) 306, 449, 1060, 1225, 1237
MlyI GAGTC 3 cut(s) 863, 959, 1427
MmeI TCCRAC 2 cut(s) 416, 1096
MseI TTAA 3 cut(s) 933, 1014, 1082
MslI CAYNNNNRTG 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 1408
MspI CCGG 1 cut(s) 1302
MspR9I CCNGG 3 cut(s) 246, 297, 920
MunI CAATTG 2 cut(s) 306, 449
Mva1269I GAATGC 2 cut(s) 983, 1121
MvaI CCWGG 3 cut(s) 246, 297, 920
MvnI CGCG 1 cut(s) 516
MwoI GCNNNNNNNGC 1 cut(s) 511
NcoI CCATGG 1 cut(s) 605
NdeI CATATG 1 cut(s) 735
NdeII GATC 4 cut(s) 65, 310, 418, 496
NlaIII CATG 9 cut(s) 88, 335, 609, 639, 667, 753, 819, 1114, 1448
NlaIV GGNNCC 6 cut(s) 39, 204, 603, 1371, 1372, 1428
NmuCI GTSAC 3 cut(s) 154, 1355, 1375
NspI RCATGY 2 cut(s) 335, 639
PagI TCATGA 1 cut(s) 1444
PctI GAATGC 2 cut(s) 983, 1121
PfeI GAWTC 5 cut(s) 43, 349, 890, 1244, 1252
PflMI CCANNNNNTGG 2 cut(s) 374, 590
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 1 cut(s) 481
PleI GAGTC 3 cut(s) 863, 959, 1426
PpsI GAGTC 3 cut(s) 863, 959, 1426
Psp124BI GAGCTC 1 cut(s) 444
Psp6I CCWGG 3 cut(s) 244, 295, 918
PspFI CCCAGC 1 cut(s) 1117
PspGI CCWGG 3 cut(s) 244, 295, 918
PspN4I GGNNCC 6 cut(s) 39, 204, 603, 1371, 1372, 1428
PspOMI GGGCCC 1 cut(s) 1370
PspPI GGNCC 5 cut(s) 171, 242, 575, 1370, 1371
PstNI CAGNNNCTG 1 cut(s) 1421
PsuI RGATCY 2 cut(s) 418, 496
PvuII CAGCTG 1 cut(s) 1408
RsaI GTAC 5 cut(s) 76, 89, 189, 508, 693
RsaNI GTAC 5 cut(s) 75, 88, 188, 507, 692
RseI CAYNNNNRTG 1 cut(s) 116
SacI GAGCTC 1 cut(s) 444
SaqAI TTAA 3 cut(s) 933, 1014, 1082
SatI GCNGC 1 cut(s) 480
Sau3AI GATC 4 cut(s) 65, 310, 418, 496
Sau96I GGNCC 5 cut(s) 171, 242, 575, 1370, 1371
ScaI AGTACT 1 cut(s) 189
SchI GAGTC 3 cut(s) 863, 959, 1427
ScrFI CCNGG 3 cut(s) 246, 297, 920
SduI GDGCHC 4 cut(s) 444, 604, 1118, 1374
SfaNI GCATC 1 cut(s) 1127
SfcI CTRYAG 1 cut(s) 175
SinI GGWCC 2 cut(s) 242, 575
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 2 cut(s) 560, 695
SmoI CTYRAG 2 cut(s) 560, 695
Sse9I AATT 5 cut(s) 306, 449, 1060, 1225, 1237
SsiI CCGC 2 cut(s) 131, 516
SspI AATATT 1 cut(s) 930
SspMI CTAG 1 cut(s) 1349
SstI GAGCTC 1 cut(s) 444
StyD4I CCNGG 3 cut(s) 244, 295, 918
StyI CCWWGG 3 cut(s) 19, 605, 880
TaaI ACNGT 1 cut(s) 437
TaiI ACGT 2 cut(s) 292, 1222
TaqI TCGA 4 cut(s) 165, 727, 867, 910
TasI AATT 5 cut(s) 306, 449, 1060, 1225, 1237
TatI WGTACW 4 cut(s) 74, 87, 187, 691
TfiI GAWTC 5 cut(s) 43, 349, 890, 1244, 1252
Tru1I TTAA 3 cut(s) 933, 1014, 1082
Tru9I TTAA 3 cut(s) 933, 1014, 1082
TscAI CASTG 4 cut(s) 39, 75, 442, 516
TseFI GTSAC 3 cut(s) 154, 1355, 1375
TseI GCWGC 1 cut(s) 479
Tsp45I GTSAC 3 cut(s) 154, 1355, 1375
TspDTI ATGAA 4 cut(s) 35, 141, 332, 773
TspGWI ACGGA 2 cut(s) 1149, 1374
TspRI CASTG 4 cut(s) 39, 75, 442, 516
Van91I CCANNNNNTGG 2 cut(s) 374, 590
VpaK11BI GGWCC 2 cut(s) 242, 575
XagI CCTNNNNNAGG 1 cut(s) 1286
XceI RCATGY 2 cut(s) 335, 639
XmiI GTMKAC 1 cut(s) 706
XspI CTAG 1 cut(s) 1349
ZrmI AGTACT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.