Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024384.1

Orthogroup ID

OG0003746

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1805

Gene Structure 1805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024384.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 487 bp

atgccatttccttttcctctgtatgatgtacttgagcaaagtctacccttctacaacttccttcgacgccatatgaggcagacatcatgccttatgaagtctggtttgcctgaacccgaactcccagttccagaaaatgagaagttacttgcatgggttggtgatgagattgttccacgagagagtgcaaaggtttctgtgttcgactcggttgtccaaggtggtgattcagtttgggagggacttcgagtttaccaggggaaaatatttaagcttgaagaacatttggataggttatttgactcagcaaaggctttggcattcaacaatgttcctactcgtgaagaggtcaaagaagccatattcagaactcttattcggaatggaatgtttgacaattcacacatccgactaagtttaactcgtggcaaaaaggttacttctggcatgagcccagcattcaatctttacggatgcaccttgattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_4 Methyltransf_16

Protein Analysis

162

Amino Acids

18.51

Weight (kDa)

6.84

Isoelectric Point (pI)

63.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05190 AT3G05190 AT3G05190 AT5G27410 AT5G27410 AT5G27410 AT5G27410
fragaria_vesca	FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350 FvH4_6g05350
malus_domestica	MD04G1209000.v1.1 MD12G1223500.v1.1 MD12G1223700.v1.1
prunus_persica	Prupe.6G330000_v2.0.a1 Prupe.6G330000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454121
rosa_laevigata	RLG00000025481
rosa_multiflora	Rmu_co8200578.1_g000001 Rmu_co8412533.1_g000001 Rmu_sc0018584.1_g000004 Rmu_sc0024384.1_g000001 Rmu_sc0026189.1_g000001
rosa_roxburghii	Rroxscaffold_165G00436900
rosa_rugosa	Rorug02G0653400 Rorug02G0653500
rosa_samantha	Rh3AG056100 Rh3BG057500 Rh3CG056800 Rh3DG058000
rosa_wichuraiana	Rw3G004300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	43
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	278, 325, 463
AjnI	CCWGG	1 cut(s)	255
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	173, 236
BanII	GRGCYC	1 cut(s)	455
BauI	CACGAG	3 cut(s)	177, 339, 423
BciT130I	CCWGG	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	257
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	464
BmuI	ACTGGG	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	217, 256
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bse1I	ACTGG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	217, 256
BseGI	GGATG	2 cut(s)	405, 479
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	125
BseYI	CCCAGC	1 cut(s)	454
BslFI	GGGAC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	2 cut(s)	320, 458
Bsp1286I	GDGCHC	1 cut(s)	455
BspCNI	CTCAG	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	217, 256
BssNI	GRCGYC	1 cut(s)	67
BssSI	CACGAG	3 cut(s)	177, 339, 423
BssT1I	CCWWGG	1 cut(s)	217
Bst2BI	CACGAG	3 cut(s)	177, 339, 423
Bst2UI	CCWGG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	339
BstACI	GRCGYC	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	304, 413
BstF5I	GGATG	2 cut(s)	405, 479
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	405, 479
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	3 cut(s)	87, 153, 448
CviJI	RGCY	4 cut(s)	274, 314, 359, 453
CviKI_1	RGCY	4 cut(s)	274, 314, 359, 453
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	304, 413
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	90, 156, 451
FaiI	YATR	8 cut(s)	24, 72, 74, 88, 95, 154, 362, 449
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	3 cut(s)	86, 152, 447
FauNDI	CATATG	1 cut(s)	72
FblI	GTMKAC	1 cut(s)	43
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	455
GsaI	CCCAGC	1 cut(s)	458
HgaI	GACGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	3 cut(s)	90, 156, 451
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	3 cut(s)	206, 227, 302
HphI	GGTGA	2 cut(s)	173, 236
Hpy166II	GTNNAC	2 cut(s)	44, 253
Hpy188I	TCNGA	3 cut(s)	368, 381, 410
Hpy188III	TCNNGA	2 cut(s)	131, 341
Hpy8I	GTNNAC	2 cut(s)	44, 253
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	2 cut(s)	58, 71
HpyCH4V	TGCA	3 cut(s)	152, 188, 477
HpyF3I	CTNAG	2 cut(s)	304, 413
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	3 cut(s)	90, 156, 451
LpnPI	CCDG	8 cut(s)	87, 123, 138, 144, 242, 269, 429, 468
LweI	GCATC	1 cut(s)	464
MaeIII	GTNAC	2 cut(s)	144, 436
MboII	GAAGA	2 cut(s)	290, 356
MhlI	GDGCHC	1 cut(s)	455
MluCI	AATT	1 cut(s)	397
MlyI	GAGTC	2 cut(s)	200, 296
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	4 cut(s)	27, 69, 232, 340
MseI	TTAA	2 cut(s)	270, 419
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	2 cut(s)	320, 458
MvaI	CCWGG	1 cut(s)	257
NdeI	CATATG	1 cut(s)	72
NlaIII	CATG	3 cut(s)	90, 156, 451
PctI	GAATGC	2 cut(s)	320, 458
PfeI	GAWTC	1 cut(s)	227
PleI	GAGTC	2 cut(s)	200, 296
PpsI	GAGTC	2 cut(s)	200, 296
Psp6I	CCWGG	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	255
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	270, 419
SchI	GAGTC	2 cut(s)	200, 296
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	455
SetI	ASST	7 cut(s)	195, 223, 276, 296, 351, 438, 482
SfaNI	GCATC	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	1 cut(s)	397
SspI	AATATT	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	217
TaqI	TCGA	3 cut(s)	64, 204, 247
TasI	AATT	1 cut(s)	397
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	270, 419
Tru9I	TTAA	2 cut(s)	270, 419
TspDTI	ATGAA	1 cut(s)	110
TspGWI	ACGGA	1 cut(s)	486
XmiI	GTMKAC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.